Ss1.1-Tra1-TCH01F030028.5
|
AAAAAAAAAGAAAAGAAAAGAAAGAAAAAGAAACAAAAGAGAAACATAGTGGGCAGAAAT
ACTGTAAAAATGGGGGGGGGATGATAAGCACATTTCTCGTTAAAATATATGTGGTAACCA
CATCTCTGAAGCAAGGGTCATTTACAGAGCTCCTGCTCTAGAACTAGGTCCTCAAATGGT
TTGACTTAAATCTTTAATTTATTAATGGCGTTTTTATTCCATAGGTTCATGTTAGTCCTT
ATTCACTTGAAAAGATAAATGTCTTATCAGATAAAGAACTAGATAACATTTGACACTGTA
AAAATCATATTGGATGGGATATAAATAATCTGGAGCACCAAGTTTCTGTGTGGTACCCGC
AGCATTTAAAAATAAATCCTGGGGCGGGACTTCTGCCTCTGGCCAAGTAAGGAGGTCGAC
AACTCTTCTGTTTAAAACAGCAAATATAAAATTGGACCAAACGAATAAAAACAATCATTT
CAGCGTGTGGAAATCGAGTAAAGGCATAAAACAATCTGAGAAATGTTTATGCTAGAACAA
CAGCTGAACTTCTTTTAAGAATAGCCGGAGTTTGTGGAATTCTTGCCGGGGGCTGCTCCC
ATCCCTTGCCCCGTTGTCATGGAGGTTCTGGGAGCAAGGAGACCACAGTCCATAAGGGCT
GGCAGGTTGCTGCTTTGTCAAAGAGAATGCACTTGATCTGGAATGGTGGGCAACTCTCAC
GACCAGTGATGGGCTTAATGATGTTGGTGGGGGGGCGGTGGTTGGGGATGGCCAGTGGCT
GTGTTATCTTGAGGTTGCTGTCGTGGTTGGGGAAGCATATTTCTGGCTAAGGCTGCCGAC
ATATGCAGCAGACAACAGAGGGCCAAGCTGTCCGTGCACTCCTGGCCAATCCTGAGGCTG
AGCACATGCACAGAGGACATGAGGAAGGGCTGGGCGGAGAGCCACAGCTGAGACCAGCTT
GAAAATGGCCTGAACTTTGAGTGTGCTCCTGTAGCCTTAGATCCATTGGCAGAGAATGGA
AGTCTTACTGGCTTTGAGCATGGTGTTTGTGAAATCATTGGCCAACTATTAAGCCACACA
GACACAAGAGTGATAACTAGGAAACCAGGATTAAAAATAAAAACAAGAATTAAAAAAGAA
AACCAAGAAGAGACATCCATCACCTCACACTGCAGAGGTGGTAGATTTCACAGAATTAAT
CCAGGCAAATTG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAAAAAAAGAAAAGAAAAGAAAGAAAAAGAAACAAAAGAGAAACATAGTGGGCAGAAAT
ACTGTAAAAATGGGGGGGGGATGATAAGCACATTTCTCGTTAAAATATATGTGGTAACCA
CATCTCTGAAGCAAGGGTCATTTACAGAGCTCCTGCTCTAGAACTAGGTCCTCAAATGGT
TTGACTTAAATCTTTAATTTATTAATGGCGTTTTTATTCCATAGGTTCATGTTAGTCCTT
ATTCACTTGAAAAGATAAATGTCTTATCAGATAAAGAACTAGATAACATTTGACACTGTA
AAAATCATATTGGATGGGATATAAATAATCTGGAGCACCAAGTTTCTGTGTGGTACCCGC
AGCATTTAAAAATAAATCCTGGGGCGGGACTTCTGCCTCTGGCCAAGTAAGGAGGTCGAC
AACTCTTCTGTTTAAAACAGCAAATATAAAATTGGACCAAACGAATAAAAACAATCATTT
CAGCGTGTGGAAATCGAGTAAAGGCATAAAACAATCTGAGAAATGTTTATGCTAGAACAA
CAGCTGAACTTCTTTTAAGAATAGCCGGAGTTTGTGGAATTCTTGCCGGGGGCTGCTCCC
ATCCCTTGCCCCGTTGTCATGGAGGTTCTGGGAGCAAGGAGACCACAGTCCATAAGGGCT
GGCAGGTTGCTGCTTTGTCAAAGAGAATGCACTTGATCTGGAATGGTGGGCAACTCTCAC
GACCAGTGATGGGCTTAATGATGTTGGTGGGGGGGCGGTGGTTGGGGATGGCCAGTGGCT
GTGTTATCTTGAGGTTGCTGTCGTGGTTGGGGAAGCATATTTCTGGCTAAGGCTGCCGAC
ATATGCAGCAGACAACAGAGGGCCAAGCTGTCCGTGCACTCCTGGCCAATCCTGAGGCTG
AGCACATGCACAGAGGACATGAGGAAGGGCTGGGCGGAGAGCCACAGCTGAGACCAGCTT
GAAAATGGCCTGAACTTTGAGTGTGCTCCTGTAGCCTTAGATCCATTGGCAGAGAATGGA
AGTCTTACTGGCTTTGAGCATGGTGTTTGTGAAATCATTGGCCAACTATTAAGCCACACA
GACACAAGAGTGATAACTAGGAAACCAGGATTAAAAATAAAAACAAGAATTAAAAAAGAA
AACCAAGAAGAGACATCCATCACCTCACACTGCAGAGGTGGTAGATTTCACAGAATTAAT
CCAGGCAAATTG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
41-988, gnl|bosTau2|chr17 (12128163-12129126) |
|
41-988, gnl|canFam2|chr19 (5802121-5801508) |
|
41-988, gnl|dasNov1|scaffold_152 (34337-34945) |
|
41-988, gnl|echTel1|scaffold_295953 (12760-13349) |
|
41-988, gnl|hg17|chr4 (141277761-141278369) |
|
41-988, gnl|Hg17|chr4 (141278732-141277757) |
|
41-988, gnl|loxAfr1|scaffold_47701 (5432-4848) |
|
41-988, gnl|mm7|chr3 (52084297-52084845) |
|
41-988, gnl|oryCun1|scaffold_214415 (76872-76280) |
|
41-988, gnl|panTro1|chr3 (158533955-158534564) |
|
41-988, gnl|rheMac2|chr5 (132458881-132459489) |
|
41-988, gnl|rn3|chr2 (140793237-140793771) |
| |
|
999-1211, gnl|bosTau2|chr17 (12129167-12129393) |
|
999-1211, gnl|Hg17|chr4 (141277740-141277518) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
41-988, gnl|bosTau2|chr17 (12128163-12129126) |
|
41-988, gnl|canFam2|chr19 (5802121-5801508) |
|
41-988, gnl|dasNov1|scaffold_152 (34337-34945) |
|
41-988, gnl|echTel1|scaffold_295953 (12760-13349) |
|
41-988, gnl|hg17|chr4 (141277761-141278369) |
|
41-988, gnl|Hg17|chr4 (141278732-141277757) |
|
41-988, gnl|loxAfr1|scaffold_47701 (5432-4848) |
|
41-988, gnl|mm7|chr3 (52084297-52084845) |
|
41-988, gnl|oryCun1|scaffold_214415 (76872-76280) |
|
41-988, gnl|panTro1|chr3 (158533955-158534564) |
|
41-988, gnl|rheMac2|chr5 (132458881-132459489) |
|
41-988, gnl|rn3|chr2 (140793237-140793771) |
| |
|
999-1211, gnl|bosTau2|chr17 (12129167-12129393) |
|
999-1211, gnl|Hg17|chr4 (141277740-141277518) |
|
cje (0.165235) |
|
lun (0.150489) |
|
cje (0.165235) |
|
lun (0.150489) |
