Ss1.1-Tra1-TCH01F030038.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGTCCCTGGAGAGAGGACCCCAATGCTGGAGGATGTGGACGAGGGGGGCATCCGGCCCT GGCACCTTGTGAAGCCAAGCGATGAGCCGGAGCCTCCCAGGCCTCGGAGAGGCAGCCTTC GGGGCGGGGAGCGGGAGCGAGCCAAGGCCATCCCTGAGATCTACCTGACTCGCCTGCTGT CTATGAAGGGAACCCTGCAGAAGTTTGTGGATGACCTGTTCCAGGTGATTCTCAGCACCA GCCGCCCTGTGCCACTCGCTATCAAGTACTTTTTCGACCTGCTGGATGAGCAGGCCCAGC AGCACGGCATCTCTGACCAGGACACCGTCCATATCCGGAAAACCAACAGCTTGCCCCTGA GGTTTTGGATCAATATAATCAAAAATCCCCAGTTTGTGTTCGACGTGCAGACATCTGATA ACATGGATGCAGTGCTCCTGGTCATTGCACAGACCTTCATGGATGCCTGCACCCTGGCTG ACCACAAGCTGGGCCGGGACTCCCCCATCAACAAACTTCTGTATGCTCGGGATATTCCCC GTTACAAACGGATGGTGGAAAGGTATTATGCAGACATCCGACAGACCATCCCCGCCAGTG ATCAAGAGATGAACTCCATCCTGGCCGAGCTGTCCAGGAACTACTCTGGAGACCTGGGGA CGAGAGTGGCCTTGCATGAGCTCTACAAGTATATCAACAAATACTATGACCAGATCATCA CTGCCCTGGAGGAGGATGGCACTGCCCAGAAGATGCAGCTGGGCTATCGGCTCCAGCAGA TCGCAGCAGCTGTGGAAAACAAAGTCACGGATCTCTAGGGACTCAGAGAGCCCTCGCCTG CTGTTGCCTCAGCCCTGCCTGGGCAGCCCCGGAACTGTGAGGGAGAGACCACCTTCTTAG ATGCCTGTAGTGCCTGACCAGCAGAGTTAGTGGATGGTGGCTCCCAGTCTCCTGGTGGCT CTGGCCTGGGCCTTGCTGGACTCACCTTGCAGGCCTGGGGCCTTAAGGCTAATGGGTTGG TTGCCCAGCCTGCTCCCTGGGCCCAGTGACCCTGTCTGTGGGCTATTCTCTGTGTGACAT CAGTCTGCAGGGAGCTGGGGACTGCGGGCTTGCAGAAAGAGGCTGGAAAGGGCCTCCAGC CCTGGGGAGACTGTGCTGTTCCTGAACACGGGCCTCTATCCCAGTGGGATGCAGACAGGA AGGAGGAGAGCCCCCATTTCCTGTCCTGCCCTCCTTCTCATCATCCCTGACCTCAGCCGC TCTGGCCTTGCTGCTGTCATGTTCTTAGGTCTGAGAGATGAATGCCTTTCCTGGGCCACT GCACACTGACCCCTCAGCAGGGCAGGCTGCCTCAGGGCCACCCAGCCTCTGAGGTAGCCA GTGGTGAGGGGGTCTGTGGCAGGGAGGGCCTTGGGGAGAGTGGTGGTCCCACTGATCCAC CTCTTCATTAAAGGATAACACATTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGTCCCTGGAGAGAGGACCCCAATGCTGGAGGATGTGGACGAGGGGGGCATCCGGCCCT GGCACCTTGTGAAGCCAAGCGATGAGCCGGAGCCTCCCAGGCCTCGGAGAGGCAGCCTTC GGGGCGGGGAGCGGGAGCGAGCCAAGGCCATCCCTGAGATCTACCTGACTCGCCTGCTGT CTATGAAGGGAACCCTGCAGAAGTTTGTGGATGACCTGTTCCAGGTGATTCTCAGCACCA GCCGCCCTGTGCCACTCGCTATCAAGTACTTTTTCGACCTGCTGGATGAGCAGGCCCAGC AGCACGGCATCTCTGACCAGGACACCGTCCATATCCGGAAAACCAACAGCTTGCCCCTGA GGTTTTGGATCAATATAATCAAAAATCCCCAGTTTGTGTTCGACGTGCAGACATCTGATA ACATGGATGCAGTGCTCCTGGTCATTGCACAGACCTTCATGGATGCCTGCACCCTGGCTG ACCACAAGCTGGGCCGGGACTCCCCCATCAACAAACTTCTGTATGCTCGGGATATTCCCC GTTACAAACGGATGGTGGAAAGGTATTATGCAGACATCCGACAGACCATCCCCGCCAGTG ATCAAGAGATGAACTCCATCCTGGCCGAGCTGTCCAGGAACTACTCTGGAGACCTGGGGA CGAGAGTGGCCTTGCATGAGCTCTACAAGTATATCAACAAATACTATGACCAGATCATCA CTGCCCTGGAGGAGGATGGCACTGCCCAGAAGATGCAGCTGGGCTATCGGCTCCAGCAGA TCGCAGCAGCTGTGGAAAACAAAGTCACGGATCTCTAGGGACTCAGAGAGCCCTCGCCTG CTGTTGCCTCAGCCCTGCCTGGGCAGCCCCGGAACTGTGAGGGAGAGACCACCTTCTTAG ATGCCTGTAGTGCCTGACCAGCAGAGTTAGTGGATGGTGGCTCCCAGTCTCCTGGTGGCT CTGGCCTGGGCCTTGCTGGACTCACCTTGCAGGCCTGGGGCCTTAAGGCTAATGGGTTGG TTGCCCAGCCTGCTCCCTGGGCCCAGTGACCCTGTCTGTGGGCTATTCTCTGTGTGACAT CAGTCTGCAGGGAGCTGGGGACTGCGGGCTTGCAGAAAGAGGCTGGAAAGGGCCTCCAGC CCTGGGGAGACTGTGCTGTTCCTGAACACGGGCCTCTATCCCAGTGGGATGCAGACAGGA AGGAGGAGAGCCCCCATTTCCTGTCCTGCCCTCCTTCTCATCATCCCTGACCTCAGCCGC TCTGGCCTTGCTGCTGTCATGTTCTTAGGTCTGAGAGATGAATGCCTTTCCTGGGCCACT GCACACTGACCCCTCAGCAGGGCAGGCTGCCTCAGGGCCACCCAGCCTCTGAGGTAGCCA GTGGTGAGGGGGTCTGTGGCAGGGAGGGCCTTGGGGAGAGTGGTGGTCCCACTGATCCAC CTCTTCATTAAAGGATAACACATTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 381-498, - strand, RNAz p=0.64514 | |
| 907-1138, - strand, RNAz p=0.999118 | |
| 1285-1451, + strand, RNAz p=0.999262 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 381-498, - strand, RNAz p=0.64514 | |
| 907-1138, - strand, RNAz p=0.999118 | |
| 1285-1451, + strand, RNAz p=0.999262 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002673, + |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 18-189, gnl|bosTau2|chrX (13506637-13506460) | |
| 18-189, gnl|canFam2|chr20 (43678199-43678008) | |
| 18-189, gnl|canFam2|chrX (124634732-124634933) | |
| 18-189, gnl|danRer3|chr23 (6088500-6088677) | |
| 18-189, gnl|danRer3|chr8 (1748417-1748588) | |
| 18-189, gnl|dasNov1|scaffold_143789 (2599-2408) | |
| 18-189, gnl|dasNov1|scaffold_143789 (2406-2599) | |
| 18-189, gnl|echTel1|scaffold_298064 (8167-8361) | |
| 18-189, gnl|echTel1|scaffold_298064 (8364-8167) | |
| 18-189, gnl|fr1|chrUn (261503187-261503360) | |
| 18-189, gnl|fr1|chrUn (261503367-261503184) | |
| 18-189, gnl|galGal2|chr12 (11352751-11352559) | |
| 18-189, gnl|galGal2|chr12 (11352571-11352751) | |
| 18-189, gnl|hg17|chr3 (48426317-48426508) | |
| 18-189, gnl|hg17|chrX (152563496-152563685) | |
| 18-189, gnl|Hg17|chrX (152563512-152563683) | |
| 18-189, gnl|loxAfr1|scaffold_138854 (4088-3905) | |
| 18-189, gnl|loxAfr1|scaffold_138854 (3893-4088) | |
| 18-189, gnl|mm7|chr9 (108824686-108824495) | |
| 18-189, gnl|mm7|chrX (69156891-69157086) | |
| 18-189, gnl|Mm7|chrX (69156907-69157084) | |
| 18-189, gnl|monDom2|scaffold_178 (1285611-1285794) | |
| 18-189, gnl|monDom2|scaffold_5 (84249080-84248889) | |
| 18-189, gnl|oryCun1|scaffold_179710 (10424-10235) | |
| 18-189, gnl|oryCun1|scaffold_179710 (10235-10424) | |
| 18-189, gnl|rheMac2|chr2 (88072537-88072346) | |
| 18-189, gnl|rheMac2|chrX (151891532-151891721) | |
| 18-189, gnl|rn3|chr8 (114147997-114147806) | |
| 18-189, gnl|rn3|chrX (159767625-159767820) | |
| 18-189, gnl|tetNig1|chrUn_random (5000182-5000356) | |
| 18-189, gnl|tetNig1|chrUn_random (84906989-84906806) | |
| 18-189, gnl|xenTro1|scaffold_386 (651603-651424) | |
| 18-189, gnl|xenTro1|scaffold_82 (1407837-1408024) | |
| 346-564, gnl|bosTau2|chr4 (51585560-51585778) | |
| 346-564, gnl|Hg17|chr7 (131282829-131282611) | |
| 346-564, gnl|Mm7|chr6 (32089271-32089053) | |
| 347-498, gnl|bosTau2|chr22 (38988520-38988369) | |
| 347-498, gnl|Hg17|chr3 (48425891-48425740) | |
| 347-498, gnl|Mm7|chr9 (108825083-108825234) | |
| 711-1462, gnl|bosTau2|chr22 (38983157-38982408) | |
| 711-1462, gnl|Hg17|chr3 (48421004-48420270) | |
| 711-1462, gnl|Mm7|chr9 (108828100-108828897) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-189, gnl|bosTau2|chrX (13506637-13506460) | |
| 18-189, gnl|canFam2|chr20 (43678199-43678008) | |
| 18-189, gnl|canFam2|chrX (124634732-124634933) | |
| 18-189, gnl|danRer3|chr23 (6088500-6088677) | |
| 18-189, gnl|danRer3|chr8 (1748417-1748588) | |
| 18-189, gnl|dasNov1|scaffold_143789 (2599-2408) | |
| 18-189, gnl|dasNov1|scaffold_143789 (2406-2599) | |
| 18-189, gnl|echTel1|scaffold_298064 (8167-8361) | |
| 18-189, gnl|echTel1|scaffold_298064 (8364-8167) | |
| 18-189, gnl|fr1|chrUn (261503187-261503360) | |
| 18-189, gnl|fr1|chrUn (261503367-261503184) | |
| 18-189, gnl|galGal2|chr12 (11352751-11352559) | |
| 18-189, gnl|galGal2|chr12 (11352571-11352751) | |
| 18-189, gnl|hg17|chr3 (48426317-48426508) | |
| 18-189, gnl|hg17|chrX (152563496-152563685) | |
| 18-189, gnl|Hg17|chrX (152563512-152563683) | |
| 18-189, gnl|loxAfr1|scaffold_138854 (4088-3905) | |
| 18-189, gnl|loxAfr1|scaffold_138854 (3893-4088) | |
| 18-189, gnl|mm7|chr9 (108824686-108824495) | |
| 18-189, gnl|mm7|chrX (69156891-69157086) | |
| 18-189, gnl|Mm7|chrX (69156907-69157084) | |
| 18-189, gnl|monDom2|scaffold_178 (1285611-1285794) | |
| 18-189, gnl|monDom2|scaffold_5 (84249080-84248889) | |
| 18-189, gnl|oryCun1|scaffold_179710 (10424-10235) | |
| 18-189, gnl|oryCun1|scaffold_179710 (10235-10424) | |
| 18-189, gnl|rheMac2|chr2 (88072537-88072346) | |
| 18-189, gnl|rheMac2|chrX (151891532-151891721) | |
| 18-189, gnl|rn3|chr8 (114147997-114147806) | |
| 18-189, gnl|rn3|chrX (159767625-159767820) | |
| 18-189, gnl|tetNig1|chrUn_random (5000182-5000356) | |
| 18-189, gnl|tetNig1|chrUn_random (84906989-84906806) | |
| 18-189, gnl|xenTro1|scaffold_386 (651603-651424) | |
| 18-189, gnl|xenTro1|scaffold_82 (1407837-1408024) | |
| 346-564, gnl|bosTau2|chr4 (51585560-51585778) | |
| 346-564, gnl|Hg17|chr7 (131282829-131282611) | |
| 346-564, gnl|Mm7|chr6 (32089271-32089053) | |
| 347-498, gnl|bosTau2|chr22 (38988520-38988369) | |
| 347-498, gnl|Hg17|chr3 (48425891-48425740) | |
| 347-498, gnl|Mm7|chr9 (108825083-108825234) | |
| 711-1462, gnl|bosTau2|chr22 (38983157-38982408) | |
| 711-1462, gnl|Hg17|chr3 (48421004-48420270) | |
| 711-1462, gnl|Mm7|chr9 (108828100-108828897) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| duo (0.172801) | |
| nco (0.161734) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eru (0.120048) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| duo (0.172801) | |
| nco (0.161734) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eru (0.120048) |