Non-Coding RNA Search

Ss1.1-Tra1-TCH01F040013.5

Sequence:


               
               ATCAGTGACAGTTCAGAATCTTCAGATCACTTCTGACATGAAGGTCCAATATTACCCCAG
CCAACTATCTTGCATTTGTTTGGTTGTTTAACTCAGAGCTATTGAAACTGTAATCTTAAC
TGCGTCAGGCCTTTTAGCTCTGTTCTTGGTCGTGACCTGCACTCCCTGACCAGATCAACC
AAACCTGCCCACAAAGGCAAGATTTGAATCCATCACCAAAGTCTGAATAATAACCTGGAG
CCCAGGTCTGGCTTTTGAATTCCTGGTAACAATCCCTGCTCTTGTGGAAAGTGTCCCACT
AATTCAAATAACATAGTCGTATAATTTATAGCATGTTTTACTGAATTGGTCCAACATGTT
GGCACGGGAAGGCTCCGCTAAAATGTGTCTGGTGTCTTAAACTACAGATTTCTGGTGACT
CTTGAAACTGCTTTCAAAGATTTGGAAAATAATTAGAAGAATTTTCCTTGAAGTGGGACT
ATATTTATAGCTACAGCACGTGGTTTTGCGCATTGTAGAATTTTGCACAGACACAAGCTT
AATACCAACACTTCAGTGGTCGCCAACATTTGCATCTTTTAAAAGTTGTAAGGAATGACA
TTGACTTATGCACATTTATGCAATTCAGCAAGGCTTTACAAGTCCAGGTAACCTATATGT
TTGGACCTAATTTTACTTTCCATATTGTTTCTCCAAAGCAAGGTGAATAGGAGTTTTACT
TGTACTGGCTTGTAAAGATTTTTTAAATTACGTAGTGCATGACAACGACCAAACCCAACC
CAGTCCTTCTCTTGGCATTGTGAATTGGGGACGTTTAGCCAACACTTGGCTCATCTGACT
GTCTAGACCAGAAGTCTGCAAACTTTTCCTGTAATGACACAGAGAGTAAATATTTGGGGG
TTTATTGGCCATACAGTGTCTGTCGCAACCACTCAAGTCTGTCCTTTGTAGCATGAAAGC
AGCCACAAATAATATATAAACAAATAAGCATGGCTGGTGCCAGTTAAACTTTATTCGCAA
AAGCAGGTGGCCAGCCGTGGGCCATTGAGTTTTCAAACCTTGGTCTAGACTCCTCTGCCC
TTGCTATGCAGCTTCTTTCTTATTCCTTGGGCATTTGAAAATTTAGAAAACAAACCGGAT
ACCATGCAAGTGTTAGCCATGTCTTGAGATTTACATTAAGATCTTATTGCTTTGGGGAGT
TCCCATCATGGCACAGTGGTTAATGAATCCTACTAGGAACCATGAGGCTATGGGTTTGAT
CCCTGGCCTCACTCAGTGGGTTAAGGATCCAGTGTTGCTGTGAGCTGTGGTGTAGGTTGC
AGACAAGGCTTGGATCCTGTGTTGCTGTGGCTCTGGTGTAGGTTGGCTACAGCTCTGATT
AGACCCCTAGCCTGGAAACCTCCACATGCTGCAGGTGCGGCCCTAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGTGACAGTTCAGAATCTTCAGATCACTTCTGACATGAAGGTCCAATATTACCCCAG
CCAACTATCTTGCATTTGTTTGGTTGTTTAACTCAGAGCTATTGAAACTGTAATCTTAAC
TGCGTCAGGCCTTTTAGCTCTGTTCTTGGTCGTGACCTGCACTCCCTGACCAGATCAACC
AAACCTGCCCACAAAGGCAAGATTTGAATCCATCACCAAAGTCTGAATAATAACCTGGAG
CCCAGGTCTGGCTTTTGAATTCCTGGTAACAATCCCTGCTCTTGTGGAAAGTGTCCCACT
AATTCAAATAACATAGTCGTATAATTTATAGCATGTTTTACTGAATTGGTCCAACATGTT
GGCACGGGAAGGCTCCGCTAAAATGTGTCTGGTGTCTTAAACTACAGATTTCTGGTGACT
CTTGAAACTGCTTTCAAAGATTTGGAAAATAATTAGAAGAATTTTCCTTGAAGTGGGACT
ATATTTATAGCTACAGCACGTGGTTTTGCGCATTGTAGAATTTTGCACAGACACAAGCTT
AATACCAACACTTCAGTGGTCGCCAACATTTGCATCTTTTAAAAGTTGTAAGGAATGACA
TTGACTTATGCACATTTATGCAATTCAGCAAGGCTTTACAAGTCCAGGTAACCTATATGT
TTGGACCTAATTTTACTTTCCATATTGTTTCTCCAAAGCAAGGTGAATAGGAGTTTTACT
TGTACTGGCTTGTAAAGATTTTTTAAATTACGTAGTGCATGACAACGACCAAACCCAACC
CAGTCCTTCTCTTGGCATTGTGAATTGGGGACGTTTAGCCAACACTTGGCTCATCTGACT
GTCTAGACCAGAAGTCTGCAAACTTTTCCTGTAATGACACAGAGAGTAAATATTTGGGGG
TTTATTGGCCATACAGTGTCTGTCGCAACCACTCAAGTCTGTCCTTTGTAGCATGAAAGC
AGCCACAAATAATATATAAACAAATAAGCATGGCTGGTGCCAGTTAAACTTTATTCGCAA
AAGCAGGTGGCCAGCCGTGGGCCATTGAGTTTTCAAACCTTGGTCTAGACTCCTCTGCCC
TTGCTATGCAGCTTCTTTCTTATTCCTTGGGCATTTGAAAATTTAGAAAACAAACCGGAT
ACCATGCAAGTGTTAGCCATGTCTTGAGATTTACATTAAGATCTTATTGCTTTGGGGAGT
TCCCATCATGGCACAGTGGTTAATGAATCCTACTAGGAACCATGAGGCTATGGGTTTGAT
CCCTGGCCTCACTCAGTGGGTTAAGGATCCAGTGTTGCTGTGAGCTGTGGTGTAGGTTGC
AGACAAGGCTTGGATCCTGTGTTGCTGTGGCTCTGGTGTAGGTTGGCTACAGCTCTGATT
AGACCCCTAGCCTGGAAACCTCCACATGCTGCAGGTGCGGCCCTAGAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               6-657, gnl|bosTau2|chr14 (39572614-39573261)
               

               
               6-657, gnl|Hg17|chr8 (99273067-99272412)
               

               
               6-657, gnl|Mm7|chr15 (34683341-34682784)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-657, gnl|bosTau2|chr14 (39572614-39573261)
               

               
               6-657, gnl|Hg17|chr8 (99273067-99272412)
               

               
               6-657, gnl|Mm7|chr15 (34683341-34682784)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               gul (0.177588)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               cty (0.10408)

	6-657, gnl\|bosTau2\|chr14 (39572614-39573261)
	6-657, gnl\|Hg17\|chr8 (99273067-99272412)
	6-657, gnl\|Mm7\|chr15 (34683341-34682784)