Ss1.1-Tra1-TCH01F040027.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGCTCGTCTCCCTGCCTGCCCACTCAGTGGCAGTGCCCCGAGGCAGCTGTCCCCTCTG GAGCGCAGCAGATCCCTCTTTCAGAACTCACTACCGAGAGCCCCCAGCAGGTGATGGCAT CAGTACCTGGTGAGCCAGCTCGTCTCCCTGCCTGCCCACTCAGTGGCAGTGCCCCGAGGC AGCTGTCCCCTCTGGAGCGCAGCAGATCCCTCTTTCAGAACTCACTACCGAGAGCCCCCA GCAGGAGCCGCCATGCGCTGCTTCAGCTTCATTAAGACCGTGATGATCCTCTTCAATCTG CTCATCTTTCTGTGTGGTGCGGCCCTGTTGGCAGTGGGCATCTGGGTCTCCGTCGACGGA CCGTCCTTCATGAAGATCTTCGGGCCGCTGTCGTCCAGTGCCATGCAGTTTGTCAACGTG GGCTACTTCCTCATCGCAGCTGGCGCTGTCCTCTTCGCTCTCGGCTTCCTGGGCTGCTAC GGGGCCCAGACGGAGAACAAGTGTGCCCTCATGATGTTCTTCTTCATCCTCCTCCTCATC TTCATTGCGGAGATCGCAGCTGCTGTGGTCGCCCTGGTCTACACCTCCATGGCTGAGCAC TTCCTGACCTTGCTGGTCGTGCCCGCCATCAAGAAAGACTACGGTTCCCAGAAGGACTTC ACCCAAGTGTGGAACTCCACCATGGAAGGGCTCAAGTGCTGTGGCTTCAACAACTACACG GATTTTGAGGGCTCTCCCTACTACACTGAGAACAAGGTCTTCCCGCCATACTGTTGCTTT GACCCTGGCAATGGCACCGCTGTGGAACCCTGCACTAGAGATGAGGCCCAGAACAAGACG GTGCAGGGTTGCTTCAATCAGCTTCTGTACGACATCCGAACCAATGCAGTCACTGTGGGT GGTGTGGCAGCTGGAATTGGGGGCTTGGAGCTGGCTGCCATGATCGTGTCCATGTATCTA TACTGCAACCTGAAATAAGTCTGCCTCCGCCTCCGCCCCTGCTGCTGCTACCTACGACCA GGAAGGAGGTACCCTGGCACTGCCAAGAGGCGGTGATCAGGGTGGGGAGGGATCTAATGG TGCCACTTGGATCAGAGGCCCATTTGGCTGCTCTGGACTCGAGGCCAAACAGGCAGCACC CCCTTCAGCCTGTGCCTGACTTTTCCTTCCATTATGGGGTTGGGGTACACCTGTTCCAGC GCCTCTAAGAGAAGTCCTCTTGCTTATTCCTCCAGTCTGTCCCTTAAACCCTGGAGACCC CCTCGGGCCAAGGGCGGGGAGCTCTTGGTGACCCCAGTACTCCACAGAGGGGATGAGAGA AAGGCATCCTAGAGCCTGAGCATGTGCAAATCAGCAGTCACTGGGCGGATGTGTAGACAC GTCAGAATTCACAAACCCATTAAAATGTTTATATTTGGAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGCTCGTCTCCCTGCCTGCCCACTCAGTGGCAGTGCCCCGAGGCAGCTGTCCCCTCTG GAGCGCAGCAGATCCCTCTTTCAGAACTCACTACCGAGAGCCCCCAGCAGGTGATGGCAT CAGTACCTGGTGAGCCAGCTCGTCTCCCTGCCTGCCCACTCAGTGGCAGTGCCCCGAGGC AGCTGTCCCCTCTGGAGCGCAGCAGATCCCTCTTTCAGAACTCACTACCGAGAGCCCCCA GCAGGAGCCGCCATGCGCTGCTTCAGCTTCATTAAGACCGTGATGATCCTCTTCAATCTG CTCATCTTTCTGTGTGGTGCGGCCCTGTTGGCAGTGGGCATCTGGGTCTCCGTCGACGGA CCGTCCTTCATGAAGATCTTCGGGCCGCTGTCGTCCAGTGCCATGCAGTTTGTCAACGTG GGCTACTTCCTCATCGCAGCTGGCGCTGTCCTCTTCGCTCTCGGCTTCCTGGGCTGCTAC GGGGCCCAGACGGAGAACAAGTGTGCCCTCATGATGTTCTTCTTCATCCTCCTCCTCATC TTCATTGCGGAGATCGCAGCTGCTGTGGTCGCCCTGGTCTACACCTCCATGGCTGAGCAC TTCCTGACCTTGCTGGTCGTGCCCGCCATCAAGAAAGACTACGGTTCCCAGAAGGACTTC ACCCAAGTGTGGAACTCCACCATGGAAGGGCTCAAGTGCTGTGGCTTCAACAACTACACG GATTTTGAGGGCTCTCCCTACTACACTGAGAACAAGGTCTTCCCGCCATACTGTTGCTTT GACCCTGGCAATGGCACCGCTGTGGAACCCTGCACTAGAGATGAGGCCCAGAACAAGACG GTGCAGGGTTGCTTCAATCAGCTTCTGTACGACATCCGAACCAATGCAGTCACTGTGGGT GGTGTGGCAGCTGGAATTGGGGGCTTGGAGCTGGCTGCCATGATCGTGTCCATGTATCTA TACTGCAACCTGAAATAAGTCTGCCTCCGCCTCCGCCCCTGCTGCTGCTACCTACGACCA GGAAGGAGGTACCCTGGCACTGCCAAGAGGCGGTGATCAGGGTGGGGAGGGATCTAATGG TGCCACTTGGATCAGAGGCCCATTTGGCTGCTCTGGACTCGAGGCCAAACAGGCAGCACC CCCTTCAGCCTGTGCCTGACTTTTCCTTCCATTATGGGGTTGGGGTACACCTGTTCCAGC GCCTCTAAGAGAAGTCCTCTTGCTTATTCCTCCAGTCTGTCCCTTAAACCCTGGAGACCC CCTCGGGCCAAGGGCGGGGAGCTCTTGGTGACCCCAGTACTCCACAGAGGGGATGAGAGA AAGGCATCCTAGAGCCTGAGCATGTGCAAATCAGCAGTCACTGGGCGGATGTGTAGACAC GTCAGAATTCACAAACCCATTAAAATGTTTATATTTGGAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1039-1131, + strand, RNAz p=0.890505 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1039-1131, + strand, RNAz p=0.890505 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 8-120, gnl|bosTau2|chr3 (67482489-67482602) | |
| 8-120, gnl|canFam2|chr15 (17199620-17199472) | |
| 8-120, gnl|echTel1|scaffold_270485 (5164-5284) | |
| 8-120, gnl|hg17|chr1 (46358228-46358375) | |
| 8-120, gnl|Hg17|chr1 (46358245-46358360) | |
| 8-120, gnl|mm7|chr4 (115544035-115543883) | |
| 8-120, gnl|Mm7|chr4 (115544011-115543895) | |
| 8-120, gnl|panTro1|chr1_random (67233968-67233821) | |
| 8-120, gnl|rheMac2|chr1 (49118690-49118836) | |
| 8-120, gnl|rn3|chr5 (136452356-136452205) | |
| 121-254, gnl|bosTau2|chr3 (67482467-67482602) | |
| 121-254, gnl|Hg17|chr1 (46358223-46358360) | |
| 121-254, gnl|Mm7|chr4 (115544038-115543895) | |
| 310-514, gnl|bosTau2|chr3 (67485816-67486020) | |
| 310-514, gnl|Hg17|chr1 (46361883-46362087) | |
| 310-514, gnl|Mm7|chr4 (115540964-115540760) | |
| 574-698, gnl|bosTau2|chr3 (67486406-67486530) | |
| 574-698, gnl|Hg17|chr1 (46362459-46362583) | |
| 574-698, gnl|Mm7|chr4 (115540417-115540293) | |
| 1039-1412, gnl|bosTau2|chr3 (67487216-67487604) | |
| 1039-1412, gnl|canFam2|chr15 (17195123-17194207) | |
| 1039-1412, gnl|echTel1|scaffold_297260 (4075-4946) | |
| 1039-1412, gnl|hg17|chr1 (46363229-46364106) | |
| 1039-1412, gnl|Hg17|chr1 (46363265-46363655) | |
| 1039-1412, gnl|mm7|chr4 (115539425-115538686) | |
| 1039-1412, gnl|Mm7|chr4 (115539387-115539046) | |
| 1039-1412, gnl|oryCun1|scaffold_212736 (73684-72811) | |
| 1039-1412, gnl|panTro1|chr1_random (67228972-67228098) | |
| 1039-1412, gnl|rheMac2|chr1 (49123961-49124836) | |
| 1039-1412, gnl|rn3|chr5 (136447697-136446934) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-120, gnl|bosTau2|chr3 (67482489-67482602) | |
| 8-120, gnl|canFam2|chr15 (17199620-17199472) | |
| 8-120, gnl|echTel1|scaffold_270485 (5164-5284) | |
| 8-120, gnl|hg17|chr1 (46358228-46358375) | |
| 8-120, gnl|Hg17|chr1 (46358245-46358360) | |
| 8-120, gnl|mm7|chr4 (115544035-115543883) | |
| 8-120, gnl|Mm7|chr4 (115544011-115543895) | |
| 8-120, gnl|panTro1|chr1_random (67233968-67233821) | |
| 8-120, gnl|rheMac2|chr1 (49118690-49118836) | |
| 8-120, gnl|rn3|chr5 (136452356-136452205) | |
| 121-254, gnl|bosTau2|chr3 (67482467-67482602) | |
| 121-254, gnl|Hg17|chr1 (46358223-46358360) | |
| 121-254, gnl|Mm7|chr4 (115544038-115543895) | |
| 310-514, gnl|bosTau2|chr3 (67485816-67486020) | |
| 310-514, gnl|Hg17|chr1 (46361883-46362087) | |
| 310-514, gnl|Mm7|chr4 (115540964-115540760) | |
| 574-698, gnl|bosTau2|chr3 (67486406-67486530) | |
| 574-698, gnl|Hg17|chr1 (46362459-46362583) | |
| 574-698, gnl|Mm7|chr4 (115540417-115540293) | |
| 1039-1412, gnl|bosTau2|chr3 (67487216-67487604) | |
| 1039-1412, gnl|canFam2|chr15 (17195123-17194207) | |
| 1039-1412, gnl|echTel1|scaffold_297260 (4075-4946) | |
| 1039-1412, gnl|hg17|chr1 (46363229-46364106) | |
| 1039-1412, gnl|Hg17|chr1 (46363265-46363655) | |
| 1039-1412, gnl|mm7|chr4 (115539425-115538686) | |
| 1039-1412, gnl|Mm7|chr4 (115539387-115539046) | |
| 1039-1412, gnl|oryCun1|scaffold_212736 (73684-72811) | |
| 1039-1412, gnl|panTro1|chr1_random (67228972-67228098) | |
| 1039-1412, gnl|rheMac2|chr1 (49123961-49124836) | |
| 1039-1412, gnl|rn3|chr5 (136447697-136446934) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| col (5.65523) | |
| nco (3.23468) | |
| ute (0.929491) | |
| cst (0.840218) | |
| sto (0.359648) | |
| ill (0.351185) | |
| mcp (0.341297) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| clu (0.119646) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (5.65523) | |
| nco (3.23468) | |
| ute (0.929491) | |
| cst (0.840218) | |
| sto (0.359648) | |
| ill (0.351185) | |
| mcp (0.341297) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| clu (0.119646) |