Ss1.1-Tra1-TCH01F040047.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACAGACGCTGCGGCCAGGTGAGCGAGGCCTTAGGTACCCGGGCTGCGCCGCCTGGCAG CTGCGGGACTCCAGAGACGAGAGCGTGAGCGCTTGCCGCCTCCACCGAGCCCCGGGCCGG TGGCCAGCAGCGGGTACGGGGAGCGGGACAGGTCGGGGACCTCGCGGCAAGCAGGAGAGG AGAGCATAACCTGGCCCGGACAGGGTACCAAGAGCGGATTTCGCGCCCGACTCCCCAAAC GTGCCGGATTGGTTGGGAGCAGGAGCGCCATTACAAGGACTCTGAACTTGGGGACGATAT ATACTTTTAAGGACACGAGTTTCTCTGTAACGACTCCGGGCTAGGAAGGCACTTCGGGTT TGGGGATCAACGATTCACTTTGGAGGCGAGGGCGTGTAGGACGCCCTCTTAAGGCTTCCC TCCACCCTCCCATGGCGCTACCCGGCTCCTCTCAGGATCAGGCCTGGAGCCTGGAGCCTC CCACTCCCGCGGCCCCGACCTCCGCATCCTCGGGCTCCCAGGAGCGGGAGGGCGCCGGGA GCCCAGTGGTCTCCGGGGGGCTTCCCTTGGAGAAGGTGAAGCGGCCCATGAACGCGTTCA TGGTGTGGAGCTCCGCCCAGCGCCGCCAGATGGCGCAGCAGAACCCGAAGATGCACAACT CCGAGATCTCCAAGCGCCTGGGCGCGCAGTGGAAGCTGCTGGGCGAGGATGAGAAGCGGC CCTTCGTGGAGGAGGCTAAGCGGCTCCGGGCCCGGCACCTGCGCGACTACCCCGACTACA AGTACCGGCCCCGGCGCAAGACCAAGACCTCGGGGGCCGGGTCAGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACAGACGCTGCGGCCAGGTGAGCGAGGCCTTAGGTACCCGGGCTGCGCCGCCTGGCAG CTGCGGGACTCCAGAGACGAGAGCGTGAGCGCTTGCCGCCTCCACCGAGCCCCGGGCCGG TGGCCAGCAGCGGGTACGGGGAGCGGGACAGGTCGGGGACCTCGCGGCAAGCAGGAGAGG AGAGCATAACCTGGCCCGGACAGGGTACCAAGAGCGGATTTCGCGCCCGACTCCCCAAAC GTGCCGGATTGGTTGGGAGCAGGAGCGCCATTACAAGGACTCTGAACTTGGGGACGATAT ATACTTTTAAGGACACGAGTTTCTCTGTAACGACTCCGGGCTAGGAAGGCACTTCGGGTT TGGGGATCAACGATTCACTTTGGAGGCGAGGGCGTGTAGGACGCCCTCTTAAGGCTTCCC TCCACCCTCCCATGGCGCTACCCGGCTCCTCTCAGGATCAGGCCTGGAGCCTGGAGCCTC CCACTCCCGCGGCCCCGACCTCCGCATCCTCGGGCTCCCAGGAGCGGGAGGGCGCCGGGA GCCCAGTGGTCTCCGGGGGGCTTCCCTTGGAGAAGGTGAAGCGGCCCATGAACGCGTTCA TGGTGTGGAGCTCCGCCCAGCGCCGCCAGATGGCGCAGCAGAACCCGAAGATGCACAACT CCGAGATCTCCAAGCGCCTGGGCGCGCAGTGGAAGCTGCTGGGCGAGGATGAGAAGCGGC CCTTCGTGGAGGAGGCTAAGCGGCTCCGGGCCCGGCACCTGCGCGACTACCCCGACTACA AGTACCGGCCCCGGCGCAAGACCAAGACCTCGGGGGCCGGGTCAGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 377-694, - strand, RNAz p=0.99567 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 377-694, - strand, RNAz p=0.99567 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 2-828, gnl|bosTau2|chr19 (13289968-13289139) | |
| 2-828, gnl|Hg17|chr17 (7434134-7433323) | |
| 2-828, gnl|Mm7|chr11 (69736587-69737336) | |
| 576-808, gnl|bosTau2|chr12 (47321966-47321734) | |
| 576-808, gnl|canFam2|chrX (113432577-113432730) | |
| 576-808, gnl|danRer3|chr14 (54342742-54342895) | |
| 576-808, gnl|dasNov1|scaffold_3105 (25268-25115) | |
| 576-808, gnl|echTel1|scaffold_310921 (42168-42322) | |
| 576-808, gnl|fr1|chrUn (139849085-139848932) | |
| 576-808, gnl|galGal2|chr4 (10290697-10290544) | |
| 576-808, gnl|Hg17|chr13 (111770124-111770356) | |
| 576-808, gnl|hg17|chrY (2698585-2698738) | |
| 576-808, gnl|loxAfr1|scaffold_78269 (1333-1180) | |
| 576-808, gnl|Mm7|chr8 (12370603-12370835) | |
| 576-808, gnl|mm7|chrY (1812712-1812865) | |
| 576-808, gnl|monDom2|scaffold_72 (4677243-4677090) | |
| 576-808, gnl|oryCun1|scaffold_168885 (31270-31117) | |
| 576-808, gnl|panTro1|chrY (2335433-2335588) | |
| 576-808, gnl|rheMac2|chrX (138768020-138768173) | |
| 576-808, gnl|rn3|chrX (146584700-146584853) | |
| 576-808, gnl|tetNig1|chr1 (8516574-8516421) | |
| 576-808, gnl|xenTro1|scaffold_229 (891142-890989) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-828, gnl|bosTau2|chr19 (13289968-13289139) | |
| 2-828, gnl|Hg17|chr17 (7434134-7433323) | |
| 2-828, gnl|Mm7|chr11 (69736587-69737336) | |
| 576-808, gnl|bosTau2|chr12 (47321966-47321734) | |
| 576-808, gnl|canFam2|chrX (113432577-113432730) | |
| 576-808, gnl|danRer3|chr14 (54342742-54342895) | |
| 576-808, gnl|dasNov1|scaffold_3105 (25268-25115) | |
| 576-808, gnl|echTel1|scaffold_310921 (42168-42322) | |
| 576-808, gnl|fr1|chrUn (139849085-139848932) | |
| 576-808, gnl|galGal2|chr4 (10290697-10290544) | |
| 576-808, gnl|Hg17|chr13 (111770124-111770356) | |
| 576-808, gnl|hg17|chrY (2698585-2698738) | |
| 576-808, gnl|loxAfr1|scaffold_78269 (1333-1180) | |
| 576-808, gnl|Mm7|chr8 (12370603-12370835) | |
| 576-808, gnl|mm7|chrY (1812712-1812865) | |
| 576-808, gnl|monDom2|scaffold_72 (4677243-4677090) | |
| 576-808, gnl|oryCun1|scaffold_168885 (31270-31117) | |
| 576-808, gnl|panTro1|chrY (2335433-2335588) | |
| 576-808, gnl|rheMac2|chrX (138768020-138768173) | |
| 576-808, gnl|rn3|chrX (146584700-146584853) | |
| 576-808, gnl|tetNig1|chr1 (8516574-8516421) | |
| 576-808, gnl|xenTro1|scaffold_229 (891142-890989) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| nbm (0.0993246) |