Ss1.1-Tra1-TCH01F040085.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCATGTGCGCTCCGGCCCATCTTGGCCAAGATGGCGCCGGTGGAGCACGTTGTGGCCGAT GCCGGGGCTTTTCTGCAGAACGCGGCTCTGCAGGACATCGGGAAGAACATCTACACCATT AGGGATGTGGTTAGCGAGATTCGAGACAAGGCCACGCGCAGGAGGCTCGCGGTCCTGCCC TACGAGCTGCGTTTCAAGGAGCCCTTCCCGGAATACGTGCGGCTGGTAACTGAGTTTTCA AAGAAAACGGGAGACTATCCCAGCCTCTCTGCCACAGATATCCAAGTATTGGCACTCACC TACCAGTTGGAAGCAGAGTTCGTTGGGGTGTCTCACCTAAAACAAGAACCAGAAAAGGTG AAAGTGAGTTCATCGTCTCAGCACCCAGAAACTCCTCTGCACATTTCTGGTTTCCATCTG CCCTCAAAGCCTAAACGTCCACAAGAAACAGTAGAACATGGAGAGCCAGCCAGGGCGTCT GAGGACCTAGAATTCACTTCCTTTGTGTTCTGGAGAAACCCGTTGCCTGACATTGATCGT GACCTGCAGGAGCTGCTGATTGACGGAGGTGAGTGTGTTCCGAGTGAGGAGGAGAAGGAA GAGGATGGATTGGAAGAAGGGAAGGACCAAGACAGTGATGACGACGGGGGCGGGTGGATA ACCCCCAGCAACATCAAGCAGATCCAGCAGGAGCTGGAGCGGTGCTCTGTCCCCAAGGAT GTGCGGGTCGGCTGTGTGACCACGGACTTCGCCATGCAGAACGTCCTGCTCCAGATGGGG CTGCACGTGCTGGCTGTGAACGGCATGCTGATCCGTGAGGCCCGGAGCTACATCTTGCGC TGCCACGGCTGTTTCAAGACCACGTCCGACATGAGCCGAGTGTTCTGTTCACACTGTGGA AACAAGACCCTGAAGAAGGTGTCTGTGACCGTCAGCGACGACGGAACCCTGCACATGCAC TTCTCCCGCAACCCCAAGGTGCTGAATCCGCGGGGCCTCCGGTACTCACTCCCCGCTCCC AAAGGGGGCAAGTACGCCATCAACCCCCACCTGACCGAGGACCAGCGCTTCCCTCAACTG CGGCTCTCCCGCAAGGCCAGGCAGAAAACCGACGTGTTTGCCCCCGACTACGTAGCTGGG GTGTCTCCTTTTGCAGAGAACGACATCTCCAGCCGGTCGGCTACCCTGCAGGTCCGAGAC AGCACCCTGGGAGCCGGGAGGAGACGGTTAAATCCCAATGCTTCCAGAAAGAAGTTTGTG AAGAAAAGGTGAAGGGGGGCTCACAGGCAAGCTGGACTGCTGCCGTGGCTGCCGGGGAGT CCCGTGTGTCGCCCCCAGCTGTGCCGGACCGAGGGAGTGGGCCTGGCTTCCCAGTGCTGC CCCAGGACTTGCCGTGGTGCCTCGGGTTGGGTTGGTGGTGGGACTCAGCCATGCCCTGGC CCCCGTGCATCCAGAGAGAGAGTTGAATGAAAGCAGAAGAAACAGTGCCTGAAGCAGATC TTCAACCTTTAAAGAAGAGAACTTCCAAGTGGTGATATTTTTCTAATAAATGTGTTTGCA AGCTTCAAAAAAAAAAAAAAAAAAGCCTCTTAGGTGATATGAAGCAAACACTTGCGTGTG CCCAAGAATCAAGCGTTGAGGTTTATATTTTTTGTAAGAAGATACACTATGTTTATTATA ATAAAACTAAGAGCTAGCATTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCATGTGCGCTCCGGCCCATCTTGGCCAAGATGGCGCCGGTGGAGCACGTTGTGGCCGAT GCCGGGGCTTTTCTGCAGAACGCGGCTCTGCAGGACATCGGGAAGAACATCTACACCATT AGGGATGTGGTTAGCGAGATTCGAGACAAGGCCACGCGCAGGAGGCTCGCGGTCCTGCCC TACGAGCTGCGTTTCAAGGAGCCCTTCCCGGAATACGTGCGGCTGGTAACTGAGTTTTCA AAGAAAACGGGAGACTATCCCAGCCTCTCTGCCACAGATATCCAAGTATTGGCACTCACC TACCAGTTGGAAGCAGAGTTCGTTGGGGTGTCTCACCTAAAACAAGAACCAGAAAAGGTG AAAGTGAGTTCATCGTCTCAGCACCCAGAAACTCCTCTGCACATTTCTGGTTTCCATCTG CCCTCAAAGCCTAAACGTCCACAAGAAACAGTAGAACATGGAGAGCCAGCCAGGGCGTCT GAGGACCTAGAATTCACTTCCTTTGTGTTCTGGAGAAACCCGTTGCCTGACATTGATCGT GACCTGCAGGAGCTGCTGATTGACGGAGGTGAGTGTGTTCCGAGTGAGGAGGAGAAGGAA GAGGATGGATTGGAAGAAGGGAAGGACCAAGACAGTGATGACGACGGGGGCGGGTGGATA ACCCCCAGCAACATCAAGCAGATCCAGCAGGAGCTGGAGCGGTGCTCTGTCCCCAAGGAT GTGCGGGTCGGCTGTGTGACCACGGACTTCGCCATGCAGAACGTCCTGCTCCAGATGGGG CTGCACGTGCTGGCTGTGAACGGCATGCTGATCCGTGAGGCCCGGAGCTACATCTTGCGC TGCCACGGCTGTTTCAAGACCACGTCCGACATGAGCCGAGTGTTCTGTTCACACTGTGGA AACAAGACCCTGAAGAAGGTGTCTGTGACCGTCAGCGACGACGGAACCCTGCACATGCAC TTCTCCCGCAACCCCAAGGTGCTGAATCCGCGGGGCCTCCGGTACTCACTCCCCGCTCCC AAAGGGGGCAAGTACGCCATCAACCCCCACCTGACCGAGGACCAGCGCTTCCCTCAACTG CGGCTCTCCCGCAAGGCCAGGCAGAAAACCGACGTGTTTGCCCCCGACTACGTAGCTGGG GTGTCTCCTTTTGCAGAGAACGACATCTCCAGCCGGTCGGCTACCCTGCAGGTCCGAGAC AGCACCCTGGGAGCCGGGAGGAGACGGTTAAATCCCAATGCTTCCAGAAAGAAGTTTGTG AAGAAAAGGTGAAGGGGGGCTCACAGGCAAGCTGGACTGCTGCCGTGGCTGCCGGGGAGT CCCGTGTGTCGCCCCCAGCTGTGCCGGACCGAGGGAGTGGGCCTGGCTTCCCAGTGCTGC CCCAGGACTTGCCGTGGTGCCTCGGGTTGGGTTGGTGGTGGGACTCAGCCATGCCCTGGC CCCCGTGCATCCAGAGAGAGAGTTGAATGAAAGCAGAAGAAACAGTGCCTGAAGCAGATC TTCAACCTTTAAAGAAGAGAACTTCCAAGTGGTGATATTTTTCTAATAAATGTGTTTGCA AGCTTCAAAAAAAAAAAAAAAAAAGCCTCTTAGGTGATATGAAGCAAACACTTGCGTGTG CCCAAGAATCAAGCGTTGAGGTTTATATTTTTTGTAAGAAGATACACTATGTTTATTATA ATAAAACTAAGAGCTAGCATTTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 598-754, - strand, RNAz p=0.998702 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 598-754, - strand, RNAz p=0.998702 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 90-226, gnl|bosTau2|chr18 (30361272-30361136) | |
| 90-226, gnl|canFam2|chr5 (82964481-82964604) | |
| 90-226, gnl|danRer3|chr21 (31526585-31526457) | |
| 90-226, gnl|fr1|chrUn (105525620-105525492) | |
| 90-226, gnl|Hg17|chr16 (68346134-68345998) | |
| 90-226, gnl|hg17|chr4 (139839523-139839651) | |
| 90-226, gnl|loxAfr1|scaffold_30043 (36034-36157) | |
| 90-226, gnl|mm7|chr8 (106025018-106024890) | |
| 90-226, gnl|Mm7|chr8 (106025017-106024881) | |
| 90-226, gnl|monDom2|scaffold_23 (4382822-4382945) | |
| 90-226, gnl|panTro1|chr3_random (16261970-16262098) | |
| 90-226, gnl|rheMac2|chr20 (68140685-68140557) | |
| 90-226, gnl|rn3|chr19 (37295504-37295376) | |
| 90-226, gnl|tetNig1|chrUn_random (6374415-6374543) | |
| 90-226, gnl|xenTro1|scaffold_578 (443205-443077) | |
| 558-759, gnl|bosTau2|chr18 (30356262-30356061) | |
| 558-759, gnl|Hg17|chr16 (68340523-68340322) | |
| 558-759, gnl|Mm7|chr8 (106018370-106018199) | |
| 858-998, gnl|bosTau2|chr18 (30354306-30354166) | |
| 858-998, gnl|canFam2|chr5 (82970955-82970788) | |
| 858-998, gnl|danRer3|chr21 (31515880-31516055) | |
| 858-998, gnl|dasNov1|scaffold_11729 (2184-2016) | |
| 858-998, gnl|echTel1|scaffold_297329 (8075-8244) | |
| 858-998, gnl|fr1|chrUn (105523537-105523689) | |
| 858-998, gnl|galGal2|chr11_random (225993-226162) | |
| 858-998, gnl|hg17|chr16 (68336268-68336436) | |
| 858-998, gnl|Hg17|chr16 (68336421-68336281) | |
| 858-998, gnl|loxAfr1|scaffold_7960 (79268-79436) | |
| 858-998, gnl|mm7|chr8 (106016240-106016408) | |
| 858-998, gnl|Mm7|chr8 (106016393-106016253) | |
| 858-998, gnl|monDom2|scaffold_23 (4393173-4393005) | |
| 858-998, gnl|oryCun1|scaffold_202257 (46725-46558) | |
| 858-998, gnl|panTro1|chr18 (62687638-62687806) | |
| 858-998, gnl|rheMac2|chr20 (68130333-68130501) | |
| 858-998, gnl|rn3|chr19 (37286811-37286979) | |
| 858-998, gnl|tetNig1|chrUn_random (6376208-6376053) | |
| 858-998, gnl|xenTro1|scaffold_578 (437730-437892) | |
| 1002-1457, gnl|bosTau2|chr18 (30352469-30352004) | |
| 1002-1457, gnl|Hg17|chr16 (68334006-68333541) | |
| 1002-1457, gnl|Mm7|chr8 (106013327-106012877) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 90-226, gnl|bosTau2|chr18 (30361272-30361136) | |
| 90-226, gnl|canFam2|chr5 (82964481-82964604) | |
| 90-226, gnl|danRer3|chr21 (31526585-31526457) | |
| 90-226, gnl|fr1|chrUn (105525620-105525492) | |
| 90-226, gnl|Hg17|chr16 (68346134-68345998) | |
| 90-226, gnl|hg17|chr4 (139839523-139839651) | |
| 90-226, gnl|loxAfr1|scaffold_30043 (36034-36157) | |
| 90-226, gnl|mm7|chr8 (106025018-106024890) | |
| 90-226, gnl|Mm7|chr8 (106025017-106024881) | |
| 90-226, gnl|monDom2|scaffold_23 (4382822-4382945) | |
| 90-226, gnl|panTro1|chr3_random (16261970-16262098) | |
| 90-226, gnl|rheMac2|chr20 (68140685-68140557) | |
| 90-226, gnl|rn3|chr19 (37295504-37295376) | |
| 90-226, gnl|tetNig1|chrUn_random (6374415-6374543) | |
| 90-226, gnl|xenTro1|scaffold_578 (443205-443077) | |
| 558-759, gnl|bosTau2|chr18 (30356262-30356061) | |
| 558-759, gnl|Hg17|chr16 (68340523-68340322) | |
| 558-759, gnl|Mm7|chr8 (106018370-106018199) | |
| 858-998, gnl|bosTau2|chr18 (30354306-30354166) | |
| 858-998, gnl|canFam2|chr5 (82970955-82970788) | |
| 858-998, gnl|danRer3|chr21 (31515880-31516055) | |
| 858-998, gnl|dasNov1|scaffold_11729 (2184-2016) | |
| 858-998, gnl|echTel1|scaffold_297329 (8075-8244) | |
| 858-998, gnl|fr1|chrUn (105523537-105523689) | |
| 858-998, gnl|galGal2|chr11_random (225993-226162) | |
| 858-998, gnl|hg17|chr16 (68336268-68336436) | |
| 858-998, gnl|Hg17|chr16 (68336421-68336281) | |
| 858-998, gnl|loxAfr1|scaffold_7960 (79268-79436) | |
| 858-998, gnl|mm7|chr8 (106016240-106016408) | |
| 858-998, gnl|Mm7|chr8 (106016393-106016253) | |
| 858-998, gnl|monDom2|scaffold_23 (4393173-4393005) | |
| 858-998, gnl|oryCun1|scaffold_202257 (46725-46558) | |
| 858-998, gnl|panTro1|chr18 (62687638-62687806) | |
| 858-998, gnl|rheMac2|chr20 (68130333-68130501) | |
| 858-998, gnl|rn3|chr19 (37286811-37286979) | |
| 858-998, gnl|tetNig1|chrUn_random (6376208-6376053) | |
| 858-998, gnl|xenTro1|scaffold_578 (437730-437892) | |
| 1002-1457, gnl|bosTau2|chr18 (30352469-30352004) | |
| 1002-1457, gnl|Hg17|chr16 (68334006-68333541) | |
| 1002-1457, gnl|Mm7|chr8 (106013327-106012877) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cty (0.31224) | |
| duo (0.172801) | |
| pty (0.142714) | |
| cst (0.140036) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.31224) | |
| duo (0.172801) | |
| pty (0.142714) | |
| cst (0.140036) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) | |
| jej (0.0989218) | |
| eje (0.0988338) |