Ss1.1-Tra1-TCH01F050084.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCCGCCACCCCACCGTGGCAGGTGCAGCGCGCGTGCGCTGCAGGAAGCGCTCACCCCAC CTCGGTTTTCCCACAGGTCCTGCAGTCGCAGCTGGACACGCTGCTCGAGGGGCAGGAGAG CATCAAGAGCTGCAGCACCTTCACCGCGCAGGCCCTCAACCACGGCACAGAGACGGAAGT GCTGCTCGTGAAGAAGCAGATGAGCGAGAAGCTGAATGAACTGGCGGACCAGGACTTCCC GCTGCACCCGCGAGAAAACGACCAGCTGGACTTCATCGTGGAGACCGAGGGGCTCAAGAA GTCCATCCATAACCTGGGGACGATCTTAACCACCAACGCCGTCGCCTCCGAGACGGTGGC CACGGGCGAGGGGCTGCGGCAGACCATCATCGGGCAGCCCATGTCCGTCACCATAACAAC CAAGGACAAAGACGGGGAGCTGTGTAAAACGGGCAACGCCTACCTCACGGCGGAGCTGAG CACGCCCGACGGCAGCGTGGCCGACGGGGAGATCCTGGACAACAAGAACGGCACGTACGA GTTCCTGTACACCGTGCAGAAGGAGGGCGACTTCACCCTGTCGCTGCGGCTCTACGACCA GCACATCCGCGGCAGCCCGTTCAAGCTCAAGGTCATCCGGTCGGCTGACGTGTCCCCCAC CACGGAGGGCGTGAAGAGGCGCGTCAAGTCCCCGGGGAGCGGCCACGTGAAGCAGAAGGC GGTGAAGAGACCCGCCAGCATGTACAGCACCGGCAAACGAAAAGAGAATCCCATCGAAGA CGATCTGATCTTCCGAGTGGGTACTAAAGGAAGAAATAAAGGAGAATTTACAAATCTTCA AGGGGTAGCTGCATCTACAAGTGGAAAGATATTAATTGCAGACAGTAACAACCAATGTGT TCAGATATTTTCCAACGATGGGCAGTTCAAAAGTCGCTTTGGCATCCGGGGCCGCTCCCC CGGGCAGCTGCAGCGGCCCACGGGCGTTGCAGTACATCCCAGTGGGGACATAATCATTGC AGACTATGATAACAAATGGGTTAGCATCTTCTCTTCAGATGGGAAGTTCAAGACAAAAAT TGGATCAGGAAAGTTGATGGGGCCCAAAGGCGTTTCTGTGGACCGCAACGGGCATATCAT CGTGGTGGATAACAAGGCGTGCTGTGTGTTCATCTTCCAGCCCAACGGGAAAATAGTCAC CATGTTTGGTAGCCGAGGAAATGGGGACAGGCAGTTTGCAGGTACACTCGATGGTAATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCCGCCACCCCACCGTGGCAGGTGCAGCGCGCGTGCGCTGCAGGAAGCGCTCACCCCAC CTCGGTTTTCCCACAGGTCCTGCAGTCGCAGCTGGACACGCTGCTCGAGGGGCAGGAGAG CATCAAGAGCTGCAGCACCTTCACCGCGCAGGCCCTCAACCACGGCACAGAGACGGAAGT GCTGCTCGTGAAGAAGCAGATGAGCGAGAAGCTGAATGAACTGGCGGACCAGGACTTCCC GCTGCACCCGCGAGAAAACGACCAGCTGGACTTCATCGTGGAGACCGAGGGGCTCAAGAA GTCCATCCATAACCTGGGGACGATCTTAACCACCAACGCCGTCGCCTCCGAGACGGTGGC CACGGGCGAGGGGCTGCGGCAGACCATCATCGGGCAGCCCATGTCCGTCACCATAACAAC CAAGGACAAAGACGGGGAGCTGTGTAAAACGGGCAACGCCTACCTCACGGCGGAGCTGAG CACGCCCGACGGCAGCGTGGCCGACGGGGAGATCCTGGACAACAAGAACGGCACGTACGA GTTCCTGTACACCGTGCAGAAGGAGGGCGACTTCACCCTGTCGCTGCGGCTCTACGACCA GCACATCCGCGGCAGCCCGTTCAAGCTCAAGGTCATCCGGTCGGCTGACGTGTCCCCCAC CACGGAGGGCGTGAAGAGGCGCGTCAAGTCCCCGGGGAGCGGCCACGTGAAGCAGAAGGC GGTGAAGAGACCCGCCAGCATGTACAGCACCGGCAAACGAAAAGAGAATCCCATCGAAGA CGATCTGATCTTCCGAGTGGGTACTAAAGGAAGAAATAAAGGAGAATTTACAAATCTTCA AGGGGTAGCTGCATCTACAAGTGGAAAGATATTAATTGCAGACAGTAACAACCAATGTGT TCAGATATTTTCCAACGATGGGCAGTTCAAAAGTCGCTTTGGCATCCGGGGCCGCTCCCC CGGGCAGCTGCAGCGGCCCACGGGCGTTGCAGTACATCCCAGTGGGGACATAATCATTGC AGACTATGATAACAAATGGGTTAGCATCTTCTCTTCAGATGGGAAGTTCAAGACAAAAAT TGGATCAGGAAAGTTGATGGGGCCCAAAGGCGTTTCTGTGGACCGCAACGGGCATATCAT CGTGGTGGATAACAAGGCGTGCTGTGTGTTCATCTTCCAGCCCAACGGGAAAATAGTCAC CATGTTTGGTAGCCGAGGAAATGGGGACAGGCAGTTTGCAGGTACACTCGATGGTAATAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 71-804, gnl|bosTau2|chr15 (28729187-28728445) | |
| 71-804, gnl|canFam2|chr21 (32961593-32962070) | |
| 71-804, gnl|danRer3|chr10 (18264494-18264017) | |
| 71-804, gnl|dasNov1|scaffold_43638 (7672-7204) | |
| 71-804, gnl|echTel1|scaffold_194444 (3202-2725) | |
| 71-804, gnl|fr1|chrUn (13562130-13561658) | |
| 71-804, gnl|galGal2|chr4 (20462113-20461645) | |
| 71-804, gnl|hg17|chr11 (6434101-6434578) | |
| 71-804, gnl|Hg17|chr11 (6434841-6434099) | |
| 71-804, gnl|loxAfr1|scaffold_27991 (30733-31201) | |
| 71-804, gnl|mm7|chr7 (101674161-101674638) | |
| 71-804, gnl|Mm7|chr7 (101674898-101674161) | |
| 71-804, gnl|monDom2|scaffold_43 (18656183-18655706) | |
| 71-804, gnl|oryCun1|scaffold_172930 (54769-55243) | |
| 71-804, gnl|panTro1|chr9 (6576759-6577236) | |
| 71-804, gnl|rheMac2|chr14 (65747360-65746883) | |
| 71-804, gnl|rn3|chr1 (163440365-163440842) | |
| 71-804, gnl|tetNig1|chr16 (4944980-4945454) | |
| 71-804, gnl|xenTro1|scaffold_1305 (3336-3804) | |
| 902-1072, gnl|bosTau2|chr15 (28722865-28722695) | |
| 902-1072, gnl|canFam2|chr21 (32956050-32956196) | |
| 902-1072, gnl|danRer3|chr10 (18267098-18266951) | |
| 902-1072, gnl|dasNov1|scaffold_196011 (414-268) | |
| 902-1072, gnl|echTel1|scaffold_311388 (84499-84645) | |
| 902-1072, gnl|fr1|chrUn (13562660-13562512) | |
| 902-1072, gnl|galGal2|chr4 (20471079-20470934) | |
| 902-1072, gnl|hg17|chr11 (6429074-6429221) | |
| 902-1072, gnl|Hg17|chr11 (6429247-6429077) | |
| 902-1072, gnl|loxAfr1|scaffold_59816 (1195-1340) | |
| 902-1072, gnl|mm7|chr7 (101669668-101669814) | |
| 902-1072, gnl|Mm7|chr7 (101669840-101669670) | |
| 902-1072, gnl|monDom2|scaffold_43 (18657171-18657025) | |
| 902-1072, gnl|oryCun1|scaffold_172930 (50417-50563) | |
| 902-1072, gnl|panTro1|chr9 (6571725-6571871) | |
| 902-1072, gnl|rheMac2|chr14 (65752398-65752252) | |
| 902-1072, gnl|rn3|chr1 (163435899-163436045) | |
| 902-1072, gnl|tetNig1|chr16 (4944541-4944688) | |
| 902-1072, gnl|xenTro1|scaffold_1305 (1688-1835) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-804, gnl|bosTau2|chr15 (28729187-28728445) | |
| 71-804, gnl|canFam2|chr21 (32961593-32962070) | |
| 71-804, gnl|danRer3|chr10 (18264494-18264017) | |
| 71-804, gnl|dasNov1|scaffold_43638 (7672-7204) | |
| 71-804, gnl|echTel1|scaffold_194444 (3202-2725) | |
| 71-804, gnl|fr1|chrUn (13562130-13561658) | |
| 71-804, gnl|galGal2|chr4 (20462113-20461645) | |
| 71-804, gnl|hg17|chr11 (6434101-6434578) | |
| 71-804, gnl|Hg17|chr11 (6434841-6434099) | |
| 71-804, gnl|loxAfr1|scaffold_27991 (30733-31201) | |
| 71-804, gnl|mm7|chr7 (101674161-101674638) | |
| 71-804, gnl|Mm7|chr7 (101674898-101674161) | |
| 71-804, gnl|monDom2|scaffold_43 (18656183-18655706) | |
| 71-804, gnl|oryCun1|scaffold_172930 (54769-55243) | |
| 71-804, gnl|panTro1|chr9 (6576759-6577236) | |
| 71-804, gnl|rheMac2|chr14 (65747360-65746883) | |
| 71-804, gnl|rn3|chr1 (163440365-163440842) | |
| 71-804, gnl|tetNig1|chr16 (4944980-4945454) | |
| 71-804, gnl|xenTro1|scaffold_1305 (3336-3804) | |
| 902-1072, gnl|bosTau2|chr15 (28722865-28722695) | |
| 902-1072, gnl|canFam2|chr21 (32956050-32956196) | |
| 902-1072, gnl|danRer3|chr10 (18267098-18266951) | |
| 902-1072, gnl|dasNov1|scaffold_196011 (414-268) | |
| 902-1072, gnl|echTel1|scaffold_311388 (84499-84645) | |
| 902-1072, gnl|fr1|chrUn (13562660-13562512) | |
| 902-1072, gnl|galGal2|chr4 (20471079-20470934) | |
| 902-1072, gnl|hg17|chr11 (6429074-6429221) | |
| 902-1072, gnl|Hg17|chr11 (6429247-6429077) | |
| 902-1072, gnl|loxAfr1|scaffold_59816 (1195-1340) | |
| 902-1072, gnl|mm7|chr7 (101669668-101669814) | |
| 902-1072, gnl|Mm7|chr7 (101669840-101669670) | |
| 902-1072, gnl|monDom2|scaffold_43 (18657171-18657025) | |
| 902-1072, gnl|oryCun1|scaffold_172930 (50417-50563) | |
| 902-1072, gnl|panTro1|chr9 (6571725-6571871) | |
| 902-1072, gnl|rheMac2|chr14 (65752398-65752252) | |
| 902-1072, gnl|rn3|chr1 (163435899-163436045) | |
| 902-1072, gnl|tetNig1|chr16 (4944541-4944688) | |
| 902-1072, gnl|xenTro1|scaffold_1305 (1688-1835) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| che (0.136314) |