Non-Coding RNA Search

Ss1.1-Tra1-TCH01F050087.5.5

Sequence:


               
               CGTGGGCCGGGGGGCCAGCGGCGGGGAGGCCGGGGCCTGCAGGCCCCCGGTAAGGCAGGA
TCCGGACTCCGGCCCAGACTACGAGGCGCTGCCGGCTGGAGCCACTGTCACCACGCACAT
GGTGGCGGGCGCCGTGGCAGGAATCCTGGAGCACTGCGTGATGTACCCCATCGACTGCGT
CAAGACCCGGATGCAGAGCCTGCAGCCTGATCCCGCCGCCCGCTATCGCAATGTGTTGGA
GGCCCTCTGGAGGATTATAAGAACGGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGT
CACAGCAACAGGCGCAGGGCCTGCCCACGCCCTCTATTTTGCCTGCTATGAAAAGTTAAA
AAAGACATTGAGTGATGTAATCCACCCTGGGGGCAATAGCCATATTGCTGCAGGTGCGGC
CGGGTGCGTAGCAACATTACTTCATGATGCAGCCATGAATCCAGCAGAAGTGGTCAAGCA
GAGGATGCAGATGTACAACTCACCCTACCACCGGGTGACAGACTGTGTACGGGCAGTGTG
GCAAAACGAAGGGGCCGGGGCCTTTTACCGCAGCTACACCACCCAGCTCACCATGAACGT
TCCCTTCCAAGCCATCCACTTCATGACCTATGAATTCCTGCAGGAGCACTTTAACCCCCA
GAGACGGTACAACCCCAGCTCCCACGTCCTCTCCGGAGCCTGCGCAGGAGCTGTAGCTGC
CGCCGCCACAACCCCACTGGACGTTTGCAAAACACTGCTCAATACCCAGGAGTCCCTGGC
TTTGAACTCAAACATTACAGGACACATCACAGGCATGGCTAGTGCCTTCAGGACGGTGTA
TCAAGTAGGCGGAGTGACCGCCTACTTCCGAGGGGTGCAGGCGAGAGTAATTTACCAGAT
CCCCTCCACAGCCATCGCGTGGTCTGTGTATGAGTTCTTCAAATACCTGATCACTAAACG
GCAAGAAGAGTGGAGGGCAGGCAAGTGAAGCAGCACTGAATGGAGCCAGGGGTTCAGCCA
TGCCGCTGCGCCCTGCCCACTCCAGCCGCGTTCTCTGTCTCCTGGCATCCTCCAGCCTCG
AGTGGAGTGGGACGGCAGGCAGAGGGCTCTCCTCAGGCTCTCGGTGGCTTGGCTACACCA
GTTCCTGCCGCCCTCTGTCGTCGTCGCCGCCTCCGCCGCCTTTCCTTCCAGACCCTGAGC
AAGTGCAGCGAGACACACCACAGCATCTCTGACACTCTCTCCATCCTGGGCCCGATGCCC
TGCTCTAGACTGTTATAGAGGGATAAGCAGCTCATTCCCCTGGTTCCTAATAAAAAGCCT
TTAAGTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGGGCCGGGGGGCCAGCGGCGGGGAGGCCGGGGCCTGCAGGCCCCCGGTAAGGCAGGA
TCCGGACTCCGGCCCAGACTACGAGGCGCTGCCGGCTGGAGCCACTGTCACCACGCACAT
GGTGGCGGGCGCCGTGGCAGGAATCCTGGAGCACTGCGTGATGTACCCCATCGACTGCGT
CAAGACCCGGATGCAGAGCCTGCAGCCTGATCCCGCCGCCCGCTATCGCAATGTGTTGGA
GGCCCTCTGGAGGATTATAAGAACGGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGT
CACAGCAACAGGCGCAGGGCCTGCCCACGCCCTCTATTTTGCCTGCTATGAAAAGTTAAA
AAAGACATTGAGTGATGTAATCCACCCTGGGGGCAATAGCCATATTGCTGCAGGTGCGGC
CGGGTGCGTAGCAACATTACTTCATGATGCAGCCATGAATCCAGCAGAAGTGGTCAAGCA
GAGGATGCAGATGTACAACTCACCCTACCACCGGGTGACAGACTGTGTACGGGCAGTGTG
GCAAAACGAAGGGGCCGGGGCCTTTTACCGCAGCTACACCACCCAGCTCACCATGAACGT
TCCCTTCCAAGCCATCCACTTCATGACCTATGAATTCCTGCAGGAGCACTTTAACCCCCA
GAGACGGTACAACCCCAGCTCCCACGTCCTCTCCGGAGCCTGCGCAGGAGCTGTAGCTGC
CGCCGCCACAACCCCACTGGACGTTTGCAAAACACTGCTCAATACCCAGGAGTCCCTGGC
TTTGAACTCAAACATTACAGGACACATCACAGGCATGGCTAGTGCCTTCAGGACGGTGTA
TCAAGTAGGCGGAGTGACCGCCTACTTCCGAGGGGTGCAGGCGAGAGTAATTTACCAGAT
CCCCTCCACAGCCATCGCGTGGTCTGTGTATGAGTTCTTCAAATACCTGATCACTAAACG
GCAAGAAGAGTGGAGGGCAGGCAAGTGAAGCAGCACTGAATGGAGCCAGGGGTTCAGCCA
TGCCGCTGCGCCCTGCCCACTCCAGCCGCGTTCTCTGTCTCCTGGCATCCTCCAGCCTCG
AGTGGAGTGGGACGGCAGGCAGAGGGCTCTCCTCAGGCTCTCGGTGGCTTGGCTACACCA
GTTCCTGCCGCCCTCTGTCGTCGTCGCCGCCTCCGCCGCCTTTCCTTCCAGACCCTGAGC
AAGTGCAGCGAGACACACCACAGCATCTCTGACACTCTCTCCATCCTGGGCCCGATGCCC
TGCTCTAGACTGTTATAGAGGGATAAGCAGCTCATTCCCCTGGTTCCTAATAAAAAGCCT
TTAAGTTAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K4J9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K4J9_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               223-382, + strand, RNAz p=0.921061
               

               
               669-948, - strand, RNAz p=0.955379

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-382, + strand, RNAz p=0.921061
               

               
               669-948, - strand, RNAz p=0.955379

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC076399, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC076399, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               183-408, gnl|bosTau2|chr26 (11999850-11999625)
               

               
               183-408, gnl|Hg17|chr10 (101363673-101363448)
               

               
               183-408, gnl|Mm7|chr19 (43561018-43560793)
               


               
               469-1330, gnl|bosTau2|chr26 (11997277-11996431)
               

               
               469-1330, gnl|Hg17|chr10 (101361115-101360269)
               

               
               469-1330, gnl|Mm7|chr19 (43558518-43557669)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-408, gnl|bosTau2|chr26 (11999850-11999625)
               

               
               183-408, gnl|Hg17|chr10 (101363673-101363448)
               

               
               183-408, gnl|Mm7|chr19 (43561018-43560793)
               


               
               469-1330, gnl|bosTau2|chr26 (11997277-11996431)
               

               
               469-1330, gnl|Hg17|chr10 (101361115-101360269)
               

               
               469-1330, gnl|Mm7|chr19 (43558518-43557669)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cov (0.528611)
               

               
               amn (0.417711)
               

               
               cag (0.302389)
               

               
               pla (0.267344)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               che (0.136314)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.528611)
               

               
               amn (0.417711)
               

               
               cag (0.302389)
               

               
               pla (0.267344)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               che (0.136314)
               

               
               med (0.116252)

	223-382, + strand, RNAz p=0.921061
	669-948, - strand, RNAz p=0.955379

	183-408, gnl\|bosTau2\|chr26 (11999850-11999625)
	183-408, gnl\|Hg17\|chr10 (101363673-101363448)
	183-408, gnl\|Mm7\|chr19 (43561018-43560793)

	469-1330, gnl\|bosTau2\|chr26 (11997277-11996431)
	469-1330, gnl\|Hg17\|chr10 (101361115-101360269)
	469-1330, gnl\|Mm7\|chr19 (43558518-43557669)

	cov (0.528611)
	amn (0.417711)
	cag (0.302389)
	pla (0.267344)
	jca (0.22792)
	fcc (0.197785)
	nco (0.161734)
	che (0.136314)
	med (0.116252)