Ss1.1-Tra1-TCH01F050098.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTCAGTGGCCTGGCCCCTCTCGCTTCTCCCTGACAACTCTGAGCTTGCTGTTCTCTCTC TAGCCATGATTGCCAGACAGCAGTGTGTCCGCGGCAGGCCCCAGGGCTTTAGCTGTGGCT CAGCCATCGTAGGTGGGGGCAAGAAGTCTGCTTTCAGCTCCATCTCCTTGTCCGGGGGCG CAGGCCGCTGTTCCTCTGGGGGTTTCGGCAGCAGAAGCCTCTACAACCTTGGAGGGAAAA AGAGCATCTCCATCAGCGTGGCTGGGGCCCGGCAAGGTGCTGGCTTTGGGGCTGCTGGGT GTTTTGGGGCTGGCGGCTTTGGCACAGGTTTTGGTGCTGGCGGCTTTGGTGGTGGACTCG GCGGGTCCTTCGGTGGATGGGGTGGGGCTGGCTCTCTTGTCTGCCCTGCCGGAGGGATTC AACAGGTCACCATCAACCAGAGCCTGCTCACTCCACTCCACGTGGAGATCGACCCTGAGA TCCAGAAGGTCCGGACCCAAGAGCGGGAGCAGATCAAGATCCTCAACGACAAGTTCGCCT CCTTCATCGACAAGGTGCGGTTCTTAGAGCAGCAGAATAAGGTGCTGGAGACGAAGTGGA ACCTCCTCCAGCAGCAGAAAACCACCACATCCAGCAAAAACCTCGACCCCTTCTTTGAGG CCTATATTAGTGCCTTGAGGAAGCAGTTGGATACCTTGACCAATGACAAGGGATACCTGC AGTCTGAGCTGAAGATCATGCAGGACAGCGTGGAGGACTTCAAGGCCAAGTATGAAGAAG AAATCAACAAACGCACGGCTGCAGAAAATGACTTTGTGGTACTCAAGAAGGATGTGGATG CTGCCTACATGAACAAGGTGGAGTTGGAGGCCAAGGTGGACGGCCTTAATGATGAGATCA ACTTCCTGAGGATCCTCTATGCTGCAGAGCTGTCCCAGATGCAGACCCACGTCAGTGACA CGTCTGTGGTCCTGTCCATGGACAACAACCGGGACCTGGACCTGGACAGCATCATCGCTG AGGTCCGCGCCCAGTATGAGGAGATCACCCAGAGAAGCAAGGCTGAGGCCGAGGCCCTGT ATCAGATTAAGATCCAGCAGCTCCAGATCTCGGTTGACCAACATGGTGACAGCCTGAAGA ACACCAAGAATGAGATTTCAGAGCTTAACAGGATGATCCAGAGGCTGCGGGCTGAGATTG AAAACATCAAGAAGCAGTGCCAGACTCTGCAGGGATCTGTGGCCGATGCAGAGCAGCGTG GGGAGGCGGCCCTAAAGGATGCCTACAGCAAGCGTGCAGAGCTGGAGGCTGCCCTGAAGA AGGCCAAGGAGGAGCTGGCCCGGATGCTGCGTGAATACCAGGAGCTGATGAGCGTGAAGC TGGCCTTGGACATTGAGATCGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGTGCCGAA TGTCTGGAGAGTGCCAGAGCGCCGTGAGCATCTCTGTGGTTGGTGGCGCTGCCAGCGCAG GAGGCATCGGCAGCGGAGGGTTAGGGAGCTGCTCTGGATTTGGCTTGGGCGCCGGCTTCG GCTCTGGTTCCGGAAGTGGCTTTGGGTTTGGTAGCGGGGTTTGTGGCAGTGCTGGCAGCA AGATCATTTCCACCACCACCACCTCCACCCTGACCAAGAGGTCCCAGCGATAGAGGAGAC GACGTCCCTGCAGCCCCCCTGGGGCCAGCCTGGCGCTGCCTTGGTGTCTCTGCTTCCTTC ACTCCCCTCCCTACTCCGTTCCTGGGCCTCATCTCACCTGTGTCACCTCAGTGCCGGGGC ATGGACTCTGCCTTCTTGGAGTTTGGTCGCATCTTCCTGATTTGGGCTTGGTGACCCAGC TGGAACAACGGGAGAGGGATCAGCTGACTCTTCACCGCCCATGGACAGAGGAGAACACAA CGAGATGCTTCATCTCTAGAATTCTCAGGGTCACATATGTCCCCTCCTCGTCCAATGCCA TCGCCTACCAGATCCTGGATATCTCTGCATCAGGACCAAACTCCTTCTCCATCACTTGGC AGCAGTGGCCCTGTGAAGTTGGGACAAGAACCACTCAGCACCCCACCCAACTCTCTTCTC CTTCCCTCTATCCATCTTTGGGTGAATCTTCAATAAAATGCTTTTGTCATTTAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTCAGTGGCCTGGCCCCTCTCGCTTCTCCCTGACAACTCTGAGCTTGCTGTTCTCTCTC TAGCCATGATTGCCAGACAGCAGTGTGTCCGCGGCAGGCCCCAGGGCTTTAGCTGTGGCT CAGCCATCGTAGGTGGGGGCAAGAAGTCTGCTTTCAGCTCCATCTCCTTGTCCGGGGGCG CAGGCCGCTGTTCCTCTGGGGGTTTCGGCAGCAGAAGCCTCTACAACCTTGGAGGGAAAA AGAGCATCTCCATCAGCGTGGCTGGGGCCCGGCAAGGTGCTGGCTTTGGGGCTGCTGGGT GTTTTGGGGCTGGCGGCTTTGGCACAGGTTTTGGTGCTGGCGGCTTTGGTGGTGGACTCG GCGGGTCCTTCGGTGGATGGGGTGGGGCTGGCTCTCTTGTCTGCCCTGCCGGAGGGATTC AACAGGTCACCATCAACCAGAGCCTGCTCACTCCACTCCACGTGGAGATCGACCCTGAGA TCCAGAAGGTCCGGACCCAAGAGCGGGAGCAGATCAAGATCCTCAACGACAAGTTCGCCT CCTTCATCGACAAGGTGCGGTTCTTAGAGCAGCAGAATAAGGTGCTGGAGACGAAGTGGA ACCTCCTCCAGCAGCAGAAAACCACCACATCCAGCAAAAACCTCGACCCCTTCTTTGAGG CCTATATTAGTGCCTTGAGGAAGCAGTTGGATACCTTGACCAATGACAAGGGATACCTGC AGTCTGAGCTGAAGATCATGCAGGACAGCGTGGAGGACTTCAAGGCCAAGTATGAAGAAG AAATCAACAAACGCACGGCTGCAGAAAATGACTTTGTGGTACTCAAGAAGGATGTGGATG CTGCCTACATGAACAAGGTGGAGTTGGAGGCCAAGGTGGACGGCCTTAATGATGAGATCA ACTTCCTGAGGATCCTCTATGCTGCAGAGCTGTCCCAGATGCAGACCCACGTCAGTGACA CGTCTGTGGTCCTGTCCATGGACAACAACCGGGACCTGGACCTGGACAGCATCATCGCTG AGGTCCGCGCCCAGTATGAGGAGATCACCCAGAGAAGCAAGGCTGAGGCCGAGGCCCTGT ATCAGATTAAGATCCAGCAGCTCCAGATCTCGGTTGACCAACATGGTGACAGCCTGAAGA ACACCAAGAATGAGATTTCAGAGCTTAACAGGATGATCCAGAGGCTGCGGGCTGAGATTG AAAACATCAAGAAGCAGTGCCAGACTCTGCAGGGATCTGTGGCCGATGCAGAGCAGCGTG GGGAGGCGGCCCTAAAGGATGCCTACAGCAAGCGTGCAGAGCTGGAGGCTGCCCTGAAGA AGGCCAAGGAGGAGCTGGCCCGGATGCTGCGTGAATACCAGGAGCTGATGAGCGTGAAGC TGGCCTTGGACATTGAGATCGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGTGCCGAA TGTCTGGAGAGTGCCAGAGCGCCGTGAGCATCTCTGTGGTTGGTGGCGCTGCCAGCGCAG GAGGCATCGGCAGCGGAGGGTTAGGGAGCTGCTCTGGATTTGGCTTGGGCGCCGGCTTCG GCTCTGGTTCCGGAAGTGGCTTTGGGTTTGGTAGCGGGGTTTGTGGCAGTGCTGGCAGCA AGATCATTTCCACCACCACCACCTCCACCCTGACCAAGAGGTCCCAGCGATAGAGGAGAC GACGTCCCTGCAGCCCCCCTGGGGCCAGCCTGGCGCTGCCTTGGTGTCTCTGCTTCCTTC ACTCCCCTCCCTACTCCGTTCCTGGGCCTCATCTCACCTGTGTCACCTCAGTGCCGGGGC ATGGACTCTGCCTTCTTGGAGTTTGGTCGCATCTTCCTGATTTGGGCTTGGTGACCCAGC TGGAACAACGGGAGAGGGATCAGCTGACTCTTCACCGCCCATGGACAGAGGAGAACACAA CGAGATGCTTCATCTCTAGAATTCTCAGGGTCACATATGTCCCCTCCTCGTCCAATGCCA TCGCCTACCAGATCCTGGATATCTCTGCATCAGGACCAAACTCCTTCTCCATCACTTGGC AGCAGTGGCCCTGTGAAGTTGGGACAAGAACCACTCAGCACCCCACCCAACTCTCTTCTC CTTCCCTCTATCCATCTTTGGGTGAATCTTCAATAAAATGCTTTTGTCATTTAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 922-1091, - strand, RNAz p=0.925735 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 922-1091, - strand, RNAz p=0.925735 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 3-557, gnl|bosTau2|chr5 (20303964-20303407) | |
| 3-557, gnl|Hg17|chr12 (51494165-51493645) | |
| 3-557, gnl|Mm7|chr15 (101910890-101910336) | |
| 922-1091, gnl|bosTau2|chr5 (20299445-20299275) | |
| 922-1091, gnl|canFam2|chr27 (5298775-5298573) | |
| 922-1091, gnl|danRer3|chr23 (6314122-6314311) | |
| 922-1091, gnl|dasNov1|scaffold_54039 (5871-6072) | |
| 922-1091, gnl|echTel1|scaffold_323098 (6268-6073) | |
| 922-1091, gnl|fr1|chrUn (50208032-50208219) | |
| 922-1091, gnl|galGal2|chrUn (7725112-7724907) | |
| 922-1091, gnl|hg17|chr12 (51488731-51488933) | |
| 922-1091, gnl|Hg17|chr12 (51488907-51488737) | |
| 922-1091, gnl|loxAfr1|scaffold_8967 (79065-79267) | |
| 922-1091, gnl|mm7|chr15 (101906702-101906903) | |
| 922-1091, gnl|Mm7|chr15 (101906878-101906708) | |
| 922-1091, gnl|monDom2|scaffold_168 (428433-428639) | |
| 922-1091, gnl|oryCun1|scaffold_204297 (95698-95899) | |
| 922-1091, gnl|panTro1|chr10 (52714743-52714945) | |
| 922-1091, gnl|rheMac2|chr11 (49876591-49876808) | |
| 922-1091, gnl|rn3|chr7 (140700584-140700785) | |
| 922-1091, gnl|tetNig1|chrUn_random (43154107-43153917) | |
| 922-1091, gnl|xenTro1|scaffold_312 (1043246-1043435) | |
| 1215-1464, gnl|bosTau2|chr5 (19570252-19570005) | |
| 1215-1464, gnl|Hg17|chr12 (50852472-50852225) | |
| 1215-1464, gnl|Mm7|chr15 (101337071-101336827) | |
| 1227-1463, gnl|bosTau2|chr5 (20374679-20374442) | |
| 1227-1463, gnl|Hg17|chr12 (51578941-51578705) | |
| 1227-1463, gnl|Mm7|chr15 (101984221-101983993) | |
| 1301-1438, gnl|bosTau2|chr19 (37398338-37398475) | |
| 1301-1438, gnl|Hg17|chr17 (40344267-40344130) | |
| 1301-1438, gnl|Mm7|chr11 (103002213-103002076) | |
| 1302-1436, gnl|bosTau2|chr13 (19902353-19902487) | |
| 1302-1436, gnl|Hg17|chr10 (17317258-17317392) | |
| 1302-1436, gnl|Mm7|chr2 (13519260-13519394) | |
| 1492-2151, gnl|bosTau2|chr5 (20297673-20297048) | |
| 1492-2151, gnl|Hg17|chr12 (51487228-51486602) | |
| 1492-2151, gnl|Mm7|chr15 (101905298-101904694) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-557, gnl|bosTau2|chr5 (20303964-20303407) | |
| 3-557, gnl|Hg17|chr12 (51494165-51493645) | |
| 3-557, gnl|Mm7|chr15 (101910890-101910336) | |
| 922-1091, gnl|bosTau2|chr5 (20299445-20299275) | |
| 922-1091, gnl|canFam2|chr27 (5298775-5298573) | |
| 922-1091, gnl|danRer3|chr23 (6314122-6314311) | |
| 922-1091, gnl|dasNov1|scaffold_54039 (5871-6072) | |
| 922-1091, gnl|echTel1|scaffold_323098 (6268-6073) | |
| 922-1091, gnl|fr1|chrUn (50208032-50208219) | |
| 922-1091, gnl|galGal2|chrUn (7725112-7724907) | |
| 922-1091, gnl|hg17|chr12 (51488731-51488933) | |
| 922-1091, gnl|Hg17|chr12 (51488907-51488737) | |
| 922-1091, gnl|loxAfr1|scaffold_8967 (79065-79267) | |
| 922-1091, gnl|mm7|chr15 (101906702-101906903) | |
| 922-1091, gnl|Mm7|chr15 (101906878-101906708) | |
| 922-1091, gnl|monDom2|scaffold_168 (428433-428639) | |
| 922-1091, gnl|oryCun1|scaffold_204297 (95698-95899) | |
| 922-1091, gnl|panTro1|chr10 (52714743-52714945) | |
| 922-1091, gnl|rheMac2|chr11 (49876591-49876808) | |
| 922-1091, gnl|rn3|chr7 (140700584-140700785) | |
| 922-1091, gnl|tetNig1|chrUn_random (43154107-43153917) | |
| 922-1091, gnl|xenTro1|scaffold_312 (1043246-1043435) | |
| 1215-1464, gnl|bosTau2|chr5 (19570252-19570005) | |
| 1215-1464, gnl|Hg17|chr12 (50852472-50852225) | |
| 1215-1464, gnl|Mm7|chr15 (101337071-101336827) | |
| 1227-1463, gnl|bosTau2|chr5 (20374679-20374442) | |
| 1227-1463, gnl|Hg17|chr12 (51578941-51578705) | |
| 1227-1463, gnl|Mm7|chr15 (101984221-101983993) | |
| 1301-1438, gnl|bosTau2|chr19 (37398338-37398475) | |
| 1301-1438, gnl|Hg17|chr17 (40344267-40344130) | |
| 1301-1438, gnl|Mm7|chr11 (103002213-103002076) | |
| 1302-1436, gnl|bosTau2|chr13 (19902353-19902487) | |
| 1302-1436, gnl|Hg17|chr10 (17317258-17317392) | |
| 1302-1436, gnl|Mm7|chr2 (13519260-13519394) | |
| 1492-2151, gnl|bosTau2|chr5 (20297673-20297048) | |
| 1492-2151, gnl|Hg17|chr12 (51487228-51486602) | |
| 1492-2151, gnl|Mm7|chr15 (101905298-101904694) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ton (11.7585) | |
| eep (1.83846) | |
| eru (0.360144) | |
| nep (0.183925) | |
| ret (0.128733) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (11.7585) | |
| eep (1.83846) | |
| eru (0.360144) | |
| nep (0.183925) | |
| ret (0.128733) |