Non-Coding RNA Search

Ss1.1-Tra1-TCH01F050102.5

Sequence:


               
               AGGAATTCGGCAGAGGGGGAACTCCAAGGATTTAGTAATTTTTAAAAATTTAATGTTATC
AGAAAGGTGATTCCATTCCTCTTTAACTTAAAGGCGCTCTATACCTCAATCTAAGTTTAC
ATTATAAAGAATCTGCCTTAGAAATGTAATGTTTCGGTTCTATACCATATACAGTGTATA
AAAACAAAGATGAAACAAGGAAGAAAACAGTAAACTAGCCTTGGCGATTTTATGCCAAGT
TCTTCAAGATGATTAACCTAAACATAAAGGACATTTTATGCAGGTGAGAATGGACCTGAC
TATGCAGGGCCAGAGTCTATCCATTGTAGGAGAATCTAAAGGCTTGCAATGAATTTCAGA
ATAAATATGTACAATTGCAAGGCCCATTTAGCTGAGCAGAAAGAAGGATAACTTCTACCG
GAAAACAGAACCAGCTCCTGCAGAAGCTCCAAACTTCCAAGGTGCATTAGACCAAACTGG
ATATCAACACCCAAATACCCACTACCCCTATAACCAAGTGCCTGTGCCTGTCAGGTTTGG
GGAAGGGGGTGATGGTCCCAGGGCTCGGTCCTTGCAAGTTGTTCTGTGGGCATCCATTCC
TTCTTGCCTTAGAAGCTTCGGGTACCTCCAAGTCTACGGGAAAGGTCACAATCCCAGCTC
TCTGCAGCCACACTGGCAAAGCCTATGGAGAAGCAAATGTAGAATTTGGACCCCCCGCCT
CCACCTGCCGCCTCCCCAGCCCAATGGGAGAGAGATAAACCTAGTTGGACACACTCTGAA
GGCCAAGCCTTTGGAAAACAGCTGCTGCCCTAACACAGTTCCACAGCCTGTAAGTGCCAA
GTGCTCAACGCAGCCTCTCACTGTCTCAGAGGCCTGCACTAGCTTCCAGAGGATTCTTGG
AGCTGTGCTTCCACAGCAGAGACTGACCTGCATGGTCTAGGCTTTTAGAAAATGCCAGTG
ACAAGGGAGTGAGTTGCCTTAAAGCGGTGTTTTCCAAACTGGGTTGTGAAATCCACTGGT
CTGTGACCAAAATAAATGTTTAATGAAGGAGAAAATGATCAAAGCGCATCACATATATCA
TAGGTAAACCAAATCTTGGCTTCTAATACCACTTCCGCTATAAAATCTGGCTGATTCCAA
GGCTGGGACAGGGTGAGACTCTGGGGCATCCGGTTAGGCTAGAAAAGCAAATGTTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAATTCGGCAGAGGGGGAACTCCAAGGATTTAGTAATTTTTAAAAATTTAATGTTATC
AGAAAGGTGATTCCATTCCTCTTTAACTTAAAGGCGCTCTATACCTCAATCTAAGTTTAC
ATTATAAAGAATCTGCCTTAGAAATGTAATGTTTCGGTTCTATACCATATACAGTGTATA
AAAACAAAGATGAAACAAGGAAGAAAACAGTAAACTAGCCTTGGCGATTTTATGCCAAGT
TCTTCAAGATGATTAACCTAAACATAAAGGACATTTTATGCAGGTGAGAATGGACCTGAC
TATGCAGGGCCAGAGTCTATCCATTGTAGGAGAATCTAAAGGCTTGCAATGAATTTCAGA
ATAAATATGTACAATTGCAAGGCCCATTTAGCTGAGCAGAAAGAAGGATAACTTCTACCG
GAAAACAGAACCAGCTCCTGCAGAAGCTCCAAACTTCCAAGGTGCATTAGACCAAACTGG
ATATCAACACCCAAATACCCACTACCCCTATAACCAAGTGCCTGTGCCTGTCAGGTTTGG
GGAAGGGGGTGATGGTCCCAGGGCTCGGTCCTTGCAAGTTGTTCTGTGGGCATCCATTCC
TTCTTGCCTTAGAAGCTTCGGGTACCTCCAAGTCTACGGGAAAGGTCACAATCCCAGCTC
TCTGCAGCCACACTGGCAAAGCCTATGGAGAAGCAAATGTAGAATTTGGACCCCCCGCCT
CCACCTGCCGCCTCCCCAGCCCAATGGGAGAGAGATAAACCTAGTTGGACACACTCTGAA
GGCCAAGCCTTTGGAAAACAGCTGCTGCCCTAACACAGTTCCACAGCCTGTAAGTGCCAA
GTGCTCAACGCAGCCTCTCACTGTCTCAGAGGCCTGCACTAGCTTCCAGAGGATTCTTGG
AGCTGTGCTTCCACAGCAGAGACTGACCTGCATGGTCTAGGCTTTTAGAAAATGCCAGTG
ACAAGGGAGTGAGTTGCCTTAAAGCGGTGTTTTCCAAACTGGGTTGTGAAATCCACTGGT
CTGTGACCAAAATAAATGTTTAATGAAGGAGAAAATGATCAAAGCGCATCACATATATCA
TAGGTAAACCAAATCTTGGCTTCTAATACCACTTCCGCTATAAAATCTGGCTGATTCCAA
GGCTGGGACAGGGTGAGACTCTGGGGCATCCGGTTAGGCTAGAAAAGCAAATGTTCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               850-963, + strand, RNAz p=0.712391

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               850-963, + strand, RNAz p=0.712391

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               27-708, gnl|bosTau2|chr3 (63119406-63120056)
               

               
               27-708, gnl|Hg17|chr1 (52527336-52526674)
               

               
               27-708, gnl|Mm7|chr4 (108013015-108013639)
               


               
               850-1200, gnl|bosTau2|chr3 (63120384-63120751)
               

               
               850-1200, gnl|Hg17|chr1 (52526529-52526134)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-708, gnl|bosTau2|chr3 (63119406-63120056)
               

               
               27-708, gnl|Hg17|chr1 (52527336-52526674)
               

               
               27-708, gnl|Mm7|chr4 (108013015-108013639)
               


               
               850-1200, gnl|bosTau2|chr3 (63120384-63120751)
               

               
               850-1200, gnl|Hg17|chr1 (52526529-52526134)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	27-708, gnl\|bosTau2\|chr3 (63119406-63120056)
	27-708, gnl\|Hg17\|chr1 (52527336-52526674)
	27-708, gnl\|Mm7\|chr4 (108013015-108013639)

	850-1200, gnl\|bosTau2\|chr3 (63120384-63120751)
	850-1200, gnl\|Hg17\|chr1 (52526529-52526134)