Non-Coding RNA Search

Ss1.1-Tra1-TCH01F060009.5

Sequence:


               
               GCAGATGCAAGAGGAATAAAGCACTTAAATAGGGAGAAAAAAGACCGATAAAGTTTCTGG
CTACAATACAAGAGACATATCATTACCATATGATCTAATGTGGGTGTCAGCCGGATTGCG
TTCATTGAGGGAAACCTTATTTTTTAACTGTGCTATGGAGTAGAAGCAGGAGGTTTTCAA
CCTAGTGACAGTCAGAGCAGCACCTACCCCCTCCTTCTTTCCACACCTGCAAACTCTTGC
TTGGGCTGAATATTTAGTGTAATTACATCTCAGCTTTGAGGGCTCCTGTGGCAAATCCCC
GGATTAAAAGGTTCCTTGGTTGTGAAAATACATGAGATAAATCATGAAGGCAACTATCAT
CTTCCTCTTGCTTGCACAAGTTTCCTGGGCTGGACCATTTCAACAGAAAGGCTTATTTGA
CTTTATGCTAGAAGATGAGGCTTCTGGGATAGGCCCAGAAGACCGCTTTCCTGAAGTTCC
TGAATTAGAGCCTCTGGGACCCATGTGTCCCTTCCGCTGTCAATGCCATCTTCGAGTTGT
CCAATGTTCTGATTTGGGTCTGGACAAAGTGCCCAAAGATCTTCCACCTGACACTGCCCT
GCTGGATCTGCAAAACAACAAAATAACTGAAATCAAAGATGGAGACTTTAAGAACCTGAA
GAACCTTCATACACTGATTCTCATCAACAACAAAATTAGCAAAATCAGCCCTGGAGCATT
TGCACCTTTGGTGAAATTGGAACGACTTTATCTATCCAAGAATCAACTGAAGGAATTGCC
AGAGAAAATGCCCAAAACTCTTCAGGAGCTGCGTGTCCATGAGAATGAGATCACCAAAGT
GCGAAAGGCTGTGTTCAATGGATTGAACCAGATGATCGTCGTAGAACTTGGCACCAACCC
GCTGAAGAGCTCAGGCATTGAAAACGGAGCTTTCCAGGGAATGAAGAAGCTCTCCTACAT
CCGCATCGCTGACACCAACATTACCACCATCCCTCAAGGTCTTCCTCCTTCCCTTACTGA
ATTACATCTTGATGGCAACAAAATCAGCAAAGTTGATGCAGCTAGCCTAAAAGGACTGAA
TAATTTGGCTAAGTTGGGACTGGGTTTCAATAGCATCTCAACTGTTGACAATGGCTCTCT
GGCCAACACTCCTCATTTGAGGGAACTTCATCTGAACAACAACAAGCTTAACAAAGTGCC
TGGTGGGCTGGCAGAGCATAAATACATCCAGGTTGTCTACCTTCATAACAACAACATCTC
TGCAGTCGGCTCTAATGACTTCTGCCCGCCTGGATACAACACCAAAAAGGCTTCTTATTC
GGGGGTGAGCCTTTTCAGCAACCCAGTCCAGTACTGGGAGATCCAGCCATCCACCTTCCG
ATGTGTCTATGTGCGCTCTGCCATTCAGCTCGGAAACTACAAGTAGCTCCCAAGAAAGCC
CTCATTTTTATAACCTGGCAAAAATCCCGTTAAGGTCATTGCTCAAAAATAAAAAATAAT
AAAAAAAAGAAAGCTAGATATTGAAAACCTAACTTCAATGTGGATGTTTTTCCCACATGA
CCTATTATTCGTAAAGCCAAATATTCAGTTTAAATAATTGCCTATAATAAAAAAATATTT
TGCCTGTCATTTTCAGAATCCTTTTTTGATGCTTACTGTTGCTGTTAACTGAGTTATTGC
AGATATTCTTATCTCACTAAATGTAAATTTTAGAGTTAACGACTTAGTAAAGCTTTTCAC
TTCCAGAAGGAATCAAATGAAAATGGTATTCTGTTAACTCATAGGGGGGTTAACCCCTTT
GACATAGTCCAGCAATGTACTCATCTCCATTATTACTGGTAAAGTCTCATTTGAGTGTGT
GAATTCAATACAGGCTATGTAAAATTTTGTGGATGTCATTATTTTGGAAAAAATAAATTC
ACAAGTACATTTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCTAAACTCA
ATTTTCTGAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGATGCAAGAGGAATAAAGCACTTAAATAGGGAGAAAAAAGACCGATAAAGTTTCTGG
CTACAATACAAGAGACATATCATTACCATATGATCTAATGTGGGTGTCAGCCGGATTGCG
TTCATTGAGGGAAACCTTATTTTTTAACTGTGCTATGGAGTAGAAGCAGGAGGTTTTCAA
CCTAGTGACAGTCAGAGCAGCACCTACCCCCTCCTTCTTTCCACACCTGCAAACTCTTGC
TTGGGCTGAATATTTAGTGTAATTACATCTCAGCTTTGAGGGCTCCTGTGGCAAATCCCC
GGATTAAAAGGTTCCTTGGTTGTGAAAATACATGAGATAAATCATGAAGGCAACTATCAT
CTTCCTCTTGCTTGCACAAGTTTCCTGGGCTGGACCATTTCAACAGAAAGGCTTATTTGA
CTTTATGCTAGAAGATGAGGCTTCTGGGATAGGCCCAGAAGACCGCTTTCCTGAAGTTCC
TGAATTAGAGCCTCTGGGACCCATGTGTCCCTTCCGCTGTCAATGCCATCTTCGAGTTGT
CCAATGTTCTGATTTGGGTCTGGACAAAGTGCCCAAAGATCTTCCACCTGACACTGCCCT
GCTGGATCTGCAAAACAACAAAATAACTGAAATCAAAGATGGAGACTTTAAGAACCTGAA
GAACCTTCATACACTGATTCTCATCAACAACAAAATTAGCAAAATCAGCCCTGGAGCATT
TGCACCTTTGGTGAAATTGGAACGACTTTATCTATCCAAGAATCAACTGAAGGAATTGCC
AGAGAAAATGCCCAAAACTCTTCAGGAGCTGCGTGTCCATGAGAATGAGATCACCAAAGT
GCGAAAGGCTGTGTTCAATGGATTGAACCAGATGATCGTCGTAGAACTTGGCACCAACCC
GCTGAAGAGCTCAGGCATTGAAAACGGAGCTTTCCAGGGAATGAAGAAGCTCTCCTACAT
CCGCATCGCTGACACCAACATTACCACCATCCCTCAAGGTCTTCCTCCTTCCCTTACTGA
ATTACATCTTGATGGCAACAAAATCAGCAAAGTTGATGCAGCTAGCCTAAAAGGACTGAA
TAATTTGGCTAAGTTGGGACTGGGTTTCAATAGCATCTCAACTGTTGACAATGGCTCTCT
GGCCAACACTCCTCATTTGAGGGAACTTCATCTGAACAACAACAAGCTTAACAAAGTGCC
TGGTGGGCTGGCAGAGCATAAATACATCCAGGTTGTCTACCTTCATAACAACAACATCTC
TGCAGTCGGCTCTAATGACTTCTGCCCGCCTGGATACAACACCAAAAAGGCTTCTTATTC
GGGGGTGAGCCTTTTCAGCAACCCAGTCCAGTACTGGGAGATCCAGCCATCCACCTTCCG
ATGTGTCTATGTGCGCTCTGCCATTCAGCTCGGAAACTACAAGTAGCTCCCAAGAAAGCC
CTCATTTTTATAACCTGGCAAAAATCCCGTTAAGGTCATTGCTCAAAAATAAAAAATAAT
AAAAAAAAGAAAGCTAGATATTGAAAACCTAACTTCAATGTGGATGTTTTTCCCACATGA
CCTATTATTCGTAAAGCCAAATATTCAGTTTAAATAATTGCCTATAATAAAAAAATATTT
TGCCTGTCATTTTCAGAATCCTTTTTTGATGCTTACTGTTGCTGTTAACTGAGTTATTGC
AGATATTCTTATCTCACTAAATGTAAATTTTAGAGTTAACGACTTAGTAAAGCTTTTCAC
TTCCAGAAGGAATCAAATGAAAATGGTATTCTGTTAACTCATAGGGGGGTTAACCCCTTT
GACATAGTCCAGCAATGTACTCATCTCCATTATTACTGGTAAAGTCTCATTTGAGTGTGT
GAATTCAATACAGGCTATGTAAAATTTTGTGGATGTCATTATTTTGGAAAAAATAAATTC
ACAAGTACATTTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCTAAACTCA
ATTTTCTGAGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               PGS2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               PGS2_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               36-154, + strand, RNAz p=0.764992
               

               
               665-783, - strand, RNAz p=0.575185

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-154, + strand, RNAz p=0.764992
               

               
               665-783, - strand, RNAz p=0.575185

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001920, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001920, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-312, gnl|bosTau2|chr5 (11383761-11384077)
               

               
               1-312, gnl|Hg17|chr12 (90079205-90078898)
               

               
               1-312, gnl|Mm7|chr10 (97041957-97042278)
               


               
               665-884, gnl|bosTau2|chr5 (11406818-11407037)
               

               
               665-884, gnl|Hg17|chr12 (90054760-90054541)
               

               
               665-884, gnl|Mm7|chr10 (97068974-97069193)
               


               
               1229-1989, gnl|bosTau2|chr5 (11421300-11422070)
               

               
               1229-1989, gnl|Hg17|chr12 (90042500-90041721)
               

               
               1229-1989, gnl|Mm7|chr10 (97079945-97080691)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-312, gnl|bosTau2|chr5 (11383761-11384077)
               

               
               1-312, gnl|Hg17|chr12 (90079205-90078898)
               

               
               1-312, gnl|Mm7|chr10 (97041957-97042278)
               


               
               665-884, gnl|bosTau2|chr5 (11406818-11407037)
               

               
               665-884, gnl|Hg17|chr12 (90054760-90054541)
               

               
               665-884, gnl|Mm7|chr10 (97068974-97069193)
               


               
               1229-1989, gnl|bosTau2|chr5 (11421300-11422070)
               

               
               1229-1989, gnl|Hg17|chr12 (90042500-90041721)
               

               
               1229-1989, gnl|Mm7|chr10 (97079945-97080691)

Expressed library(ies): 59 entry(ies)

More info

Expressed library(ies): 59 entry(ies)

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               amn (5.43024)
               

               
               eru (4.32173)
               

               
               csk (3.51865)
               

               
               ski (3.22817)
               

               
               eep (3.0641)
               

               
               jca (2.849)
               

               
               eye (2.21654)
               

               
               nep (2.2071)
               

               
               bla (1.98955)
               

               
               fat (1.76913)
               

               
               tra (1.72329)
               

               
               ese (1.51803)
               

               
               gul (1.24312)
               

               
               tbr (1.23343)
               

               
               clu (1.19646)
               

               
               ste (1.08167)
               

               
               nmm (1.06242)
               

               
               ute (1.06228)
               

               
               mas (1.05152)
               

               
               bfe (1.049)
               

               
               nca (0.958117)
               

               
               med (0.930016)
               

               
               sug (0.891039)
               

               
               eje (0.889504)
               

               
               cut (0.849618)
               

               
               hlv (0.835538)
               

               
               nje (0.8296)
               

               
               aor (0.781097)
               

               
               ret (0.7724)
               

               
               sto (0.719295)
               

               
               ldo (0.679018)
               

               
               ova (0.645661)
               

               
               nms (0.641574)
               

               
               hea (0.613497)
               

               
               lin (0.582411)
               

               
               nlu (0.575043)
               

               
               cga (0.558191)
               

               
               pla (0.534688)
               

               
               ton (0.526501)
               

               
               mcp (0.511945)
               

               
               nco (0.485201)
               

               
               mga (0.480615)
               

               
               pty (0.428143)
               

               
               cst (0.420109)
               

               
               cty (0.41632)
               

               
               ssp (0.406559)
               

               
               col (0.390016)
               

               
               kid (0.389206)
               

               
               cmu (0.372787)
               

               
               rec (0.346141)
               

               
               spc (0.226732)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               ebs (0.118301)

Expressed library(ies): 59 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (5.43024)
               

               
               eru (4.32173)
               

               
               csk (3.51865)
               

               
               ski (3.22817)
               

               
               eep (3.0641)
               

               
               jca (2.849)
               

               
               eye (2.21654)
               

               
               nep (2.2071)
               

               
               bla (1.98955)
               

               
               fat (1.76913)
               

               
               tra (1.72329)
               

               
               ese (1.51803)
               

               
               gul (1.24312)
               

               
               tbr (1.23343)
               

               
               clu (1.19646)
               

               
               ste (1.08167)
               

               
               nmm (1.06242)
               

               
               ute (1.06228)
               

               
               mas (1.05152)
               

               
               bfe (1.049)
               

               
               nca (0.958117)
               

               
               med (0.930016)
               

               
               sug (0.891039)
               

               
               eje (0.889504)
               

               
               cut (0.849618)
               

               
               hlv (0.835538)
               

               
               nje (0.8296)
               

               
               aor (0.781097)
               

               
               ret (0.7724)
               

               
               sto (0.719295)
               

               
               ldo (0.679018)
               

               
               ova (0.645661)
               

               
               nms (0.641574)
               

               
               hea (0.613497)
               

               
               lin (0.582411)
               

               
               nlu (0.575043)
               

               
               cga (0.558191)
               

               
               pla (0.534688)
               

               
               ton (0.526501)
               

               
               mcp (0.511945)
               

               
               nco (0.485201)
               

               
               mga (0.480615)
               

               
               pty (0.428143)
               

               
               cst (0.420109)
               

               
               cty (0.41632)
               

               
               ssp (0.406559)
               

               
               col (0.390016)
               

               
               kid (0.389206)
               

               
               cmu (0.372787)
               

               
               rec (0.346141)
               

               
               spc (0.226732)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               ebs (0.118301)

	36-154, + strand, RNAz p=0.764992
	665-783, - strand, RNAz p=0.575185

	1-312, gnl\|bosTau2\|chr5 (11383761-11384077)
	1-312, gnl\|Hg17\|chr12 (90079205-90078898)
	1-312, gnl\|Mm7\|chr10 (97041957-97042278)

	665-884, gnl\|bosTau2\|chr5 (11406818-11407037)
	665-884, gnl\|Hg17\|chr12 (90054760-90054541)
	665-884, gnl\|Mm7\|chr10 (97068974-97069193)

	1229-1989, gnl\|bosTau2\|chr5 (11421300-11422070)
	1229-1989, gnl\|Hg17\|chr12 (90042500-90041721)
	1229-1989, gnl\|Mm7\|chr10 (97079945-97080691)

	amn (5.43024)
	eru (4.32173)
	csk (3.51865)
	ski (3.22817)
	eep (3.0641)
	jca (2.849)
	eye (2.21654)
	nep (2.2071)
	bla (1.98955)
	fat (1.76913)
	tra (1.72329)
	ese (1.51803)
	gul (1.24312)
	tbr (1.23343)
	clu (1.19646)
	ste (1.08167)
	nmm (1.06242)
	ute (1.06228)
	mas (1.05152)
	bfe (1.049)
	nca (0.958117)
	med (0.930016)
	sug (0.891039)
	eje (0.889504)
	cut (0.849618)
	hlv (0.835538)
	nje (0.8296)
	aor (0.781097)
	ret (0.7724)
	sto (0.719295)
	ldo (0.679018)
	ova (0.645661)
	nms (0.641574)
	hea (0.613497)
	lin (0.582411)
	nlu (0.575043)
	cga (0.558191)
	pla (0.534688)
	ton (0.526501)
	mcp (0.511945)
	nco (0.485201)
	mga (0.480615)
	pty (0.428143)
	cst (0.420109)
	cty (0.41632)
	ssp (0.406559)
	col (0.390016)
	kid (0.389206)
	cmu (0.372787)
	rec (0.346141)
	spc (0.226732)
	nbm (0.198649)
	jej (0.197844)
	fty (0.17584)
	ill (0.175593)
	csp (0.161186)
	lun (0.150489)
	lnt (0.142308)
	ebs (0.118301)