Ss1.1-Tra1-TCH01F070010.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGACTCAGTAAGTTCAGCGCGCCCGCTCCGGCCGGCCCTGCGCCTCCCGCCGCGCCCC GGGATGTATTCGTCCCCGCTCTGCCTGACCCAGGATGAGTTCCACCCATTCATCGAGGCG CTGCTGCCTCACGTCCGCGCCTTCGCCTACACCTGGTTCAACCTGCAGGCGCGGAAGCGC AAGTACTTCAAGAAGCATGAGAAGCGGATGTCAAAAGATGAGGAGCGCGCGGTGAAGGAC GAGCTGCTGGGCGAGAAGGCCGAGGTCAAGCAGAAGTGGGCGTCGCGGCTGCTGGCCAAG CTGCGCAAGGACATCCGGCCCGAATGCCGCGAGGACTTTGTGCTGGCCATCACCGGCAAG AAGGCGCCAGGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATGCGCCGCATCGAC TGCCTGCGCCAGGCCGACAAGGTGTGGCGGCTGGACCTGGTCATGGTCATCCTCTTCAAG GGCATCCCGCTGGAGAGCACCGACGGCGAGCGCCTGGTCAAGGCGGCACAGTGCGGCCAC CCGGTGCTCTGCGTGCAGCCACACCACATTGGGGTGGCGGTCAAGGAGCTCGATCTCTAC CTGGCCTACTTCGTGCGCGAGCGAGATGCAGAGCAGAGCGGCAGTCCGCGGGCAGGGATG GGCTCCGACCAGGAGGACAGCAAGCCCATCACACTGGACACCACCGACTTCCAGGAGAGC TTCGTCACCTCTGGTGTGTTCAGTGTCACTGAGCTCATCCAAGTGTCCCGGACACCTGTG GTGACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTTCAGGGGCACCTGGCATATGAC CTAAATCCAGCCAGCACTGGCATGAGAAGAACGCTACCCAGCACTTCCTCCAGCGGGAGC AAGCGGCACAAATCGGGCTCGATGGAGGAAGACGTGGACACGAGCCCCGGCGGCGATTAC TACACCTCGCCCAGTTCTCCCACGAGTAGCAACCGCAACTGGACGGAGGACATGGAAGGA GGCATCTCATCCCCGGTGAAGAAAACAGAGATGGACAAGTCACCTTTCAATAGCCCATCT CCCCAGGACTCGCCTCGCCTCTCCAGCTTCACCCAGCACCACCGGCCCGTCATTGCCGTG CACAGTGGGATCGCCCGGAGCCCTCACCCATCCTCGGCCCTGCACTTCCCCACGACCTCC ATCCTGCCCCAGACGGCCTCCACCTACTTCCCCCACACAGCCATCCGCTACCCGCCTCAC CTCAACCCCCAGGACCCGCTCAAAGATCTGGTCTCCCTGGCCTGCGACCCGGCCAGTCAG CAACCTGGACCGCCTACTCTACGCCCGGCACGTCCCCTGCAAACCGTTCCTTTGTGGGAT TAGGACCAAGGGATCCAACGGGCATTTATCAGGCACAGTCCTGGTATCTGGGATAAGAAA GATTTCTTCCCACGCCCTGCTCCTTCGTCCCGGGAATCCCGGGGGGCTGCATAGCTGGCC CCCGGCCCACGTTTTCGGTGGAAAGCTAAAGCAAGCAAGAACACCCCGCCGACGCCCAGC CCGGCCGAAAGACAAACCATACAGACACATACACAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGACTCAGTAAGTTCAGCGCGCCCGCTCCGGCCGGCCCTGCGCCTCCCGCCGCGCCCC GGGATGTATTCGTCCCCGCTCTGCCTGACCCAGGATGAGTTCCACCCATTCATCGAGGCG CTGCTGCCTCACGTCCGCGCCTTCGCCTACACCTGGTTCAACCTGCAGGCGCGGAAGCGC AAGTACTTCAAGAAGCATGAGAAGCGGATGTCAAAAGATGAGGAGCGCGCGGTGAAGGAC GAGCTGCTGGGCGAGAAGGCCGAGGTCAAGCAGAAGTGGGCGTCGCGGCTGCTGGCCAAG CTGCGCAAGGACATCCGGCCCGAATGCCGCGAGGACTTTGTGCTGGCCATCACCGGCAAG AAGGCGCCAGGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATGCGCCGCATCGAC TGCCTGCGCCAGGCCGACAAGGTGTGGCGGCTGGACCTGGTCATGGTCATCCTCTTCAAG GGCATCCCGCTGGAGAGCACCGACGGCGAGCGCCTGGTCAAGGCGGCACAGTGCGGCCAC CCGGTGCTCTGCGTGCAGCCACACCACATTGGGGTGGCGGTCAAGGAGCTCGATCTCTAC CTGGCCTACTTCGTGCGCGAGCGAGATGCAGAGCAGAGCGGCAGTCCGCGGGCAGGGATG GGCTCCGACCAGGAGGACAGCAAGCCCATCACACTGGACACCACCGACTTCCAGGAGAGC TTCGTCACCTCTGGTGTGTTCAGTGTCACTGAGCTCATCCAAGTGTCCCGGACACCTGTG GTGACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTTCAGGGGCACCTGGCATATGAC CTAAATCCAGCCAGCACTGGCATGAGAAGAACGCTACCCAGCACTTCCTCCAGCGGGAGC AAGCGGCACAAATCGGGCTCGATGGAGGAAGACGTGGACACGAGCCCCGGCGGCGATTAC TACACCTCGCCCAGTTCTCCCACGAGTAGCAACCGCAACTGGACGGAGGACATGGAAGGA GGCATCTCATCCCCGGTGAAGAAAACAGAGATGGACAAGTCACCTTTCAATAGCCCATCT CCCCAGGACTCGCCTCGCCTCTCCAGCTTCACCCAGCACCACCGGCCCGTCATTGCCGTG CACAGTGGGATCGCCCGGAGCCCTCACCCATCCTCGGCCCTGCACTTCCCCACGACCTCC ATCCTGCCCCAGACGGCCTCCACCTACTTCCCCCACACAGCCATCCGCTACCCGCCTCAC CTCAACCCCCAGGACCCGCTCAAAGATCTGGTCTCCCTGGCCTGCGACCCGGCCAGTCAG CAACCTGGACCGCCTACTCTACGCCCGGCACGTCCCCTGCAAACCGTTCCTTTGTGGGAT TAGGACCAAGGGATCCAACGGGCATTTATCAGGCACAGTCCTGGTATCTGGGATAAGAAA GATTTCTTCCCACGCCCTGCTCCTTCGTCCCGGGAATCCCGGGGGGCTGCATAGCTGGCC CCCGGCCCACGTTTTCGGTGGAAAGCTAAAGCAAGCAAGAACACCCCGCCGACGCCCAGC CCGGCCGAAAGACAAACCATACAGACACATACACAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 90-208, - strand, RNAz p=0.829144 | |
| 449-608, + strand, RNAz p=0.919743 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 90-208, - strand, RNAz p=0.829144 | |
| 449-608, + strand, RNAz p=0.919743 |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 64-637, gnl|bosTau2|chr6 (66926055-66925482) | |
| 64-637, gnl|Hg17|chr9 (14297551-14296977) | |
| 64-637, gnl|Mm7|chr4 (81902525-81901953) | |
| 90-616, gnl|bosTau2|chr3 (57384206-57383680) | |
| 90-616, gnl|canFam2|chr5 (51855224-51854664) | |
| 90-616, gnl|danRer3|chr22 (13489787-13490324) | |
| 90-616, gnl|dasNov1|scaffold_18684 (8746-8186) | |
| 90-616, gnl|echTel1|scaffold_300059 (142787-143347) | |
| 90-616, gnl|fr1|chrUn (312113243-312113815) | |
| 90-616, gnl|galGal2|chr8 (27275434-27275986) | |
| 90-616, gnl|hg17|chr1 (61265840-61266400) | |
| 90-616, gnl|Hg17|chr1 (61265838-61266364) | |
| 90-616, gnl|loxAfr1|scaffold_10887 (78601-78038) | |
| 90-616, gnl|mm7|chr4 (97175687-97176247) | |
| 90-616, gnl|Mm7|chr4 (97175685-97176211) | |
| 90-616, gnl|monDom2|scaffold_40 (13705153-13704590) | |
| 90-616, gnl|oryCun1|scaffold_126140 (3834-3292) | |
| 90-616, gnl|panTro1|chr1 (59581168-59581728) | |
| 90-616, gnl|rheMac2|chr1 (63890389-63890949) | |
| 90-616, gnl|rn3|chr5 (118170467-118171027) | |
| 90-616, gnl|tetNig1|chr18 (3805581-3805040) | |
| 90-616, gnl|xenTro1|scaffold_1 (3192418-3191863) | |
| 896-1022, gnl|bosTau2|chr7 (16232856-16232982) | |
| 896-1022, gnl|canFam2|chr20 (59005447-59005311) | |
| 896-1022, gnl|danRer3|chr8 (11457640-11457505) | |
| 896-1022, gnl|dasNov1|scaffold_89115 (7833-7697) | |
| 896-1022, gnl|echTel1|scaffold_251432 (1039-903) | |
| 896-1022, gnl|fr1|chrUn (257068145-257068025) | |
| 896-1022, gnl|galGal2|chrUn (155806904-155807040) | |
| 896-1022, gnl|hg17|chr19 (3386080-3386216) | |
| 896-1022, gnl|Hg17|chr19 (3386080-3386206) | |
| 896-1022, gnl|loxAfr1|scaffold_131741 (658-522) | |
| 896-1022, gnl|mm7|chr10 (81199679-81199543) | |
| 896-1022, gnl|Mm7|chr10 (81199677-81199551) | |
| 896-1022, gnl|monDom2|scaffold_122 (1462999-1462856) | |
| 896-1022, gnl|panTro1|chr20 (3614452-3614588) | |
| 896-1022, gnl|rheMac2|chr19 (3266874-3267010) | |
| 896-1022, gnl|rn3|chr7 (9787163-9787299) | |
| 896-1022, gnl|tetNig1|chrUn_random (43825635-43825773) | |
| 896-1022, gnl|xenTro1|scaffold_242 (427033-427164) | |
| 1147-1332, gnl|bosTau2|chr7 (16240924-16241109) | |
| 1147-1332, gnl|canFam2|chr20 (58998608-58998386) | |
| 1147-1332, gnl|danRer3|chr8 (11443519-11443310) | |
| 1147-1332, gnl|dasNov1|scaffold_3092 (71481-71272) | |
| 1147-1332, gnl|echTel1|scaffold_231526 (5204-5423) | |
| 1147-1332, gnl|fr1|chrUn (257066971-257066795) | |
| 1147-1332, gnl|galGal2|chrUn (155808249-155808496) | |
| 1147-1332, gnl|hg17|chr19 (3403456-3403682) | |
| 1147-1332, gnl|Hg17|chr19 (3403479-3403664) | |
| 1147-1332, gnl|mm7|chr10 (81197021-81196816) | |
| 1147-1332, gnl|Mm7|chr10 (81197006-81196821) | |
| 1147-1332, gnl|monDom2|scaffold_122 (1455036-1454826) | |
| 1147-1332, gnl|oryCun1|scaffold_140451 (9278-9053) | |
| 1147-1332, gnl|panTro1|chr20 (3629185-3629411) | |
| 1147-1332, gnl|rheMac2|chr19 (3286930-3287156) | |
| 1147-1332, gnl|rn3|chr7 (9789683-9789889) | |
| 1147-1332, gnl|tetNig1|chrUn_random (43826530-43826742) | |
| 1147-1332, gnl|xenTro1|scaffold_242 (437391-437615) | |
| 1416-1596, gnl|bosTau2|chr7 (16248026-16248210) | |
| 1416-1596, gnl|canFam2|chr20 (58991664-58991140) | |
| 1416-1596, gnl|hg17|chr19 (3413701-3414203) | |
| 1416-1596, gnl|Hg17|chr19 (3413747-3413931) | |
| 1416-1596, gnl|loxAfr1|scaffold_50610 (5042-4515) | |
| 1416-1596, gnl|mm7|chr10 (81193109-81192759) | |
| 1416-1596, gnl|Mm7|chr10 (81193071-81192921) | |
| 1416-1596, gnl|monDom2|scaffold_122 (1436162-1435630) | |
| 1416-1596, gnl|oryCun1|scaffold_2949 (2784-3166) | |
| 1416-1596, gnl|rn3|chr7 (9793318-9793676) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 64-637, gnl|bosTau2|chr6 (66926055-66925482) | |
| 64-637, gnl|Hg17|chr9 (14297551-14296977) | |
| 64-637, gnl|Mm7|chr4 (81902525-81901953) | |
| 90-616, gnl|bosTau2|chr3 (57384206-57383680) | |
| 90-616, gnl|canFam2|chr5 (51855224-51854664) | |
| 90-616, gnl|danRer3|chr22 (13489787-13490324) | |
| 90-616, gnl|dasNov1|scaffold_18684 (8746-8186) | |
| 90-616, gnl|echTel1|scaffold_300059 (142787-143347) | |
| 90-616, gnl|fr1|chrUn (312113243-312113815) | |
| 90-616, gnl|galGal2|chr8 (27275434-27275986) | |
| 90-616, gnl|hg17|chr1 (61265840-61266400) | |
| 90-616, gnl|Hg17|chr1 (61265838-61266364) | |
| 90-616, gnl|loxAfr1|scaffold_10887 (78601-78038) | |
| 90-616, gnl|mm7|chr4 (97175687-97176247) | |
| 90-616, gnl|Mm7|chr4 (97175685-97176211) | |
| 90-616, gnl|monDom2|scaffold_40 (13705153-13704590) | |
| 90-616, gnl|oryCun1|scaffold_126140 (3834-3292) | |
| 90-616, gnl|panTro1|chr1 (59581168-59581728) | |
| 90-616, gnl|rheMac2|chr1 (63890389-63890949) | |
| 90-616, gnl|rn3|chr5 (118170467-118171027) | |
| 90-616, gnl|tetNig1|chr18 (3805581-3805040) | |
| 90-616, gnl|xenTro1|scaffold_1 (3192418-3191863) | |
| 896-1022, gnl|bosTau2|chr7 (16232856-16232982) | |
| 896-1022, gnl|canFam2|chr20 (59005447-59005311) | |
| 896-1022, gnl|danRer3|chr8 (11457640-11457505) | |
| 896-1022, gnl|dasNov1|scaffold_89115 (7833-7697) | |
| 896-1022, gnl|echTel1|scaffold_251432 (1039-903) | |
| 896-1022, gnl|fr1|chrUn (257068145-257068025) | |
| 896-1022, gnl|galGal2|chrUn (155806904-155807040) | |
| 896-1022, gnl|hg17|chr19 (3386080-3386216) | |
| 896-1022, gnl|Hg17|chr19 (3386080-3386206) | |
| 896-1022, gnl|loxAfr1|scaffold_131741 (658-522) | |
| 896-1022, gnl|mm7|chr10 (81199679-81199543) | |
| 896-1022, gnl|Mm7|chr10 (81199677-81199551) | |
| 896-1022, gnl|monDom2|scaffold_122 (1462999-1462856) | |
| 896-1022, gnl|panTro1|chr20 (3614452-3614588) | |
| 896-1022, gnl|rheMac2|chr19 (3266874-3267010) | |
| 896-1022, gnl|rn3|chr7 (9787163-9787299) | |
| 896-1022, gnl|tetNig1|chrUn_random (43825635-43825773) | |
| 896-1022, gnl|xenTro1|scaffold_242 (427033-427164) | |
| 1147-1332, gnl|bosTau2|chr7 (16240924-16241109) | |
| 1147-1332, gnl|canFam2|chr20 (58998608-58998386) | |
| 1147-1332, gnl|danRer3|chr8 (11443519-11443310) | |
| 1147-1332, gnl|dasNov1|scaffold_3092 (71481-71272) | |
| 1147-1332, gnl|echTel1|scaffold_231526 (5204-5423) | |
| 1147-1332, gnl|fr1|chrUn (257066971-257066795) | |
| 1147-1332, gnl|galGal2|chrUn (155808249-155808496) | |
| 1147-1332, gnl|hg17|chr19 (3403456-3403682) | |
| 1147-1332, gnl|Hg17|chr19 (3403479-3403664) | |
| 1147-1332, gnl|mm7|chr10 (81197021-81196816) | |
| 1147-1332, gnl|Mm7|chr10 (81197006-81196821) | |
| 1147-1332, gnl|monDom2|scaffold_122 (1455036-1454826) | |
| 1147-1332, gnl|oryCun1|scaffold_140451 (9278-9053) | |
| 1147-1332, gnl|panTro1|chr20 (3629185-3629411) | |
| 1147-1332, gnl|rheMac2|chr19 (3286930-3287156) | |
| 1147-1332, gnl|rn3|chr7 (9789683-9789889) | |
| 1147-1332, gnl|tetNig1|chrUn_random (43826530-43826742) | |
| 1147-1332, gnl|xenTro1|scaffold_242 (437391-437615) | |
| 1416-1596, gnl|bosTau2|chr7 (16248026-16248210) | |
| 1416-1596, gnl|canFam2|chr20 (58991664-58991140) | |
| 1416-1596, gnl|hg17|chr19 (3413701-3414203) | |
| 1416-1596, gnl|Hg17|chr19 (3413747-3413931) | |
| 1416-1596, gnl|loxAfr1|scaffold_50610 (5042-4515) | |
| 1416-1596, gnl|mm7|chr10 (81193109-81192759) | |
| 1416-1596, gnl|Mm7|chr10 (81193071-81192921) | |
| 1416-1596, gnl|monDom2|scaffold_122 (1436162-1435630) | |
| 1416-1596, gnl|oryCun1|scaffold_2949 (2784-3166) | |
| 1416-1596, gnl|rn3|chr7 (9793318-9793676) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| mas (0.210305) | |
| cty (0.20816) | |
| ton (0.1755) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cly (0.120642) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| cty (0.20816) | |
| ton (0.1755) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cly (0.120642) |