Ss1.1-Tra1-TCH01F070047.5
|
GGTCAACTTCCGCGCCGGAAGTGGGCGGGCCAGTGGCCCGGCCTGGGGGAAGGGAGTGAG
GGCCGAGGCTACCGTGGTGGGTCCCCCGCCAAGCTGGTTAAGGGGAGTGAGAAGGCCCGG
AGACTAACTCGACGAGAAACCCCGCGCCCCGGGAAAAAGAAACCCGGCTACACCCGCAGG
CCGCCGGCGCTCTGTGAAGATGGCGGGGCCTGAGCTACTGCTCGACTCCAACATCCGCCT
CTGGGTGGTCCTGCCAATCGTTATTATCACCTTCTTCGTGGGCATGATCCGTCACTACGT
GTCCATCCTGCTGCAGAGCGACAAGAAGCTCACCCAGGAACAAGTCTCTGACAGTCAAGT
CCTAATTCGAAGCAGAGTCCTCAGGGAAAATGGAAAATACATTCCCAAACAGTCATTCTT
GACACGAAAATACTACTTCAACAACCCAGAAGATGGATTTTTCAAAAAAACTAAAAGGAA
GGTTGTGCCACCTTCTCCTATGACTGATCCCACTATGCTCACAGACATGATGAAAGGCAA
TGTAACAAATGTCCTCCCTATGATTCTTATTGGCGGATGGATCAACATGACGTTTTCAGG
CTTTGTCACAACCAAGGTCCCATTTCCACTGACCCTCCGTTTTAAGCCTATGCTACAGCA
AGGAATTGAGCTACTCACATTAGATGCATCCTGGGTGAGTTCTGCATCCTGGTATTTCCT
CAATGTCTTTGGGCTTCGGAGCATTTACTCCCTGATTTTGGGCCAAGATAATGCTGCTGA
CCAATCGCGGATGATGCAGGAGCAGATGACTGGAGCAGCTGTGGCCATGCCCGCAGATAC
CAACAAAGCCTTTAAGACAGAGTGGGAAGCTTTGGAGCTGACAGATCACCAGTGGGCACT
AGATGATGTCGAAGAGGAGCTCATGGCCAAAGACCTCCACTTCGAAGGCATGTTCAAAAA
GGAACTACAGACCTCTATTTTCTGAAGACCAAGCAGGGGTTAGCTGTGTCAGGGACTCAG
AGTAGCACTTAACTTTGTAACTTTTGTTTGAGCCAGAGCCCCTCAGAATAAAAAGGTGGA
TGCATGAGCTGGCGGGCATGCCGCAAGGATTGTTCTTGTCTGAGGTGTGTTGCCTGTTAT
GTTTGAAACCAGAGGAAATATGAGGAGTGTGTGTTGAGTGATTTCCCCAGAAACAGCTAT
TTTTTAAAGATTTAAAAATCTTTTTTGGTAACTCTAGTAGTAAAAGTCAGAAAGGGGTAA
ACTCAAGCTAGCGATAAGATATAAAACTTAGCAAAAATTGAATCTTTGGATAAAACATTG
TCAAACCTAATTATTATGTGCAGACATTCTGATTTGTAACCACAGTAAACTGCTGTTTTC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTCAACTTCCGCGCCGGAAGTGGGCGGGCCAGTGGCCCGGCCTGGGGGAAGGGAGTGAG
GGCCGAGGCTACCGTGGTGGGTCCCCCGCCAAGCTGGTTAAGGGGAGTGAGAAGGCCCGG
AGACTAACTCGACGAGAAACCCCGCGCCCCGGGAAAAAGAAACCCGGCTACACCCGCAGG
CCGCCGGCGCTCTGTGAAGATGGCGGGGCCTGAGCTACTGCTCGACTCCAACATCCGCCT
CTGGGTGGTCCTGCCAATCGTTATTATCACCTTCTTCGTGGGCATGATCCGTCACTACGT
GTCCATCCTGCTGCAGAGCGACAAGAAGCTCACCCAGGAACAAGTCTCTGACAGTCAAGT
CCTAATTCGAAGCAGAGTCCTCAGGGAAAATGGAAAATACATTCCCAAACAGTCATTCTT
GACACGAAAATACTACTTCAACAACCCAGAAGATGGATTTTTCAAAAAAACTAAAAGGAA
GGTTGTGCCACCTTCTCCTATGACTGATCCCACTATGCTCACAGACATGATGAAAGGCAA
TGTAACAAATGTCCTCCCTATGATTCTTATTGGCGGATGGATCAACATGACGTTTTCAGG
CTTTGTCACAACCAAGGTCCCATTTCCACTGACCCTCCGTTTTAAGCCTATGCTACAGCA
AGGAATTGAGCTACTCACATTAGATGCATCCTGGGTGAGTTCTGCATCCTGGTATTTCCT
CAATGTCTTTGGGCTTCGGAGCATTTACTCCCTGATTTTGGGCCAAGATAATGCTGCTGA
CCAATCGCGGATGATGCAGGAGCAGATGACTGGAGCAGCTGTGGCCATGCCCGCAGATAC
CAACAAAGCCTTTAAGACAGAGTGGGAAGCTTTGGAGCTGACAGATCACCAGTGGGCACT
AGATGATGTCGAAGAGGAGCTCATGGCCAAAGACCTCCACTTCGAAGGCATGTTCAAAAA
GGAACTACAGACCTCTATTTTCTGAAGACCAAGCAGGGGTTAGCTGTGTCAGGGACTCAG
AGTAGCACTTAACTTTGTAACTTTTGTTTGAGCCAGAGCCCCTCAGAATAAAAAGGTGGA
TGCATGAGCTGGCGGGCATGCCGCAAGGATTGTTCTTGTCTGAGGTGTGTTGCCTGTTAT
GTTTGAAACCAGAGGAAATATGAGGAGTGTGTGTTGAGTGATTTCCCCAGAAACAGCTAT
TTTTTAAAGATTTAAAAATCTTTTTTGGTAACTCTAGTAGTAAAAGTCAGAAAGGGGTAA
ACTCAAGCTAGCGATAAGATATAAAACTTAGCAAAAATTGAATCTTTGGATAAAACATTG
TCAAACCTAATTATTATGTGCAGACATTCTGATTTGTAACCACAGTAAACTGCTGTTTTC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
5-354, gnl|bosTau2|chr22 (12072943-12072599) |
|
5-354, gnl|Hg17|chr3 (10043068-10003191) |
|
5-354, gnl|Mm7|chr6 (113692583-113692258) |
| |
|
506-616, gnl|bosTau2|chr22 (12066428-12066318) |
|
506-616, gnl|canFam2|chr5 (83233628-83233548) |
|
506-616, gnl|danRer3|chr6 (25352486-25352568) |
|
506-616, gnl|dasNov1|scaffold_118925 (7469-7387) |
|
506-616, gnl|echTel1|scaffold_325473 (135650-135732) |
|
506-616, gnl|fr1|chrUn (191061070-191060988) |
|
506-616, gnl|hg17|chr16 (68035319-68035402) |
|
506-616, gnl|Hg17|chr3 (9991173-9991063) |
|
506-616, gnl|mm7|chr6 (113681402-113681484) |
|
506-616, gnl|Mm7|chr6 (113681511-113681401) |
|
506-616, gnl|monDom2|scaffold_10 (51506381-51506304) |
|
506-616, gnl|oryCun1|scaffold_208990 (84010-83932) |
|
506-616, gnl|panTro1|chr18 (62377802-62377885) |
|
506-616, gnl|rheMac2|chr20 (67825955-67826034) |
|
506-616, gnl|rn3|chr4 (149656541-149656623) |
|
506-616, gnl|tetNig1|chr11 (6201912-6201994) |
| |
|
849-1380, gnl|bosTau2|chr22 (12059002-12058463) |
|
849-1380, gnl|Hg17|chr3 (9980890-9980037) |
|
849-1380, gnl|Mm7|chr6 (113676969-113676458) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-354, gnl|bosTau2|chr22 (12072943-12072599) |
|
5-354, gnl|Hg17|chr3 (10043068-10003191) |
|
5-354, gnl|Mm7|chr6 (113692583-113692258) |
| |
|
506-616, gnl|bosTau2|chr22 (12066428-12066318) |
|
506-616, gnl|canFam2|chr5 (83233628-83233548) |
|
506-616, gnl|danRer3|chr6 (25352486-25352568) |
|
506-616, gnl|dasNov1|scaffold_118925 (7469-7387) |
|
506-616, gnl|echTel1|scaffold_325473 (135650-135732) |
|
506-616, gnl|fr1|chrUn (191061070-191060988) |
|
506-616, gnl|hg17|chr16 (68035319-68035402) |
|
506-616, gnl|Hg17|chr3 (9991173-9991063) |
|
506-616, gnl|mm7|chr6 (113681402-113681484) |
|
506-616, gnl|Mm7|chr6 (113681511-113681401) |
|
506-616, gnl|monDom2|scaffold_10 (51506381-51506304) |
|
506-616, gnl|oryCun1|scaffold_208990 (84010-83932) |
|
506-616, gnl|panTro1|chr18 (62377802-62377885) |
|
506-616, gnl|rheMac2|chr20 (67825955-67826034) |
|
506-616, gnl|rn3|chr4 (149656541-149656623) |
|
506-616, gnl|tetNig1|chr11 (6201912-6201994) |
| |
|
849-1380, gnl|bosTau2|chr22 (12059002-12058463) |
|
849-1380, gnl|Hg17|chr3 (9980890-9980037) |
|
849-1380, gnl|Mm7|chr6 (113676969-113676458) |
|
pro (1.02407) |
|
sug (0.763747) |
|
cbe (0.717703) |
|
hyp (0.571347) |
|
cje (0.495704) |
|
tbr (0.462535) |
|
nlu (0.383362) |
|
sto (0.359648) |
|
duo (0.345602) |
|
spc (0.340097) |
|
cut (0.339847) |
|
vin (0.332557) |
|
fat (0.294855) |
|
lnt (0.284616) |
|
csk (0.281492) |
|
fce (0.271592) |
|
kid (0.259471) |
|
clu (0.239292) |
|
pan (0.23596) |
|
cbl (0.229595) |
|
tes (0.207814) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
col (0.195008) |
|
cmu (0.186393) |
|
ski (0.146735) |
|
pty (0.142714) |
|
nca (0.136874) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
cov (0.132153) |
|
ret (0.128733) |
|
bla (0.124347) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ldo (0.0970026) |
|
pro (1.02407) |
|
sug (0.763747) |
|
cbe (0.717703) |
|
hyp (0.571347) |
|
cje (0.495704) |
|
tbr (0.462535) |
|
nlu (0.383362) |
|
sto (0.359648) |
|
duo (0.345602) |
|
spc (0.340097) |
|
cut (0.339847) |
|
vin (0.332557) |
|
fat (0.294855) |
|
lnt (0.284616) |
|
csk (0.281492) |
|
fce (0.271592) |
|
kid (0.259471) |
|
clu (0.239292) |
|
pan (0.23596) |
|
cbl (0.229595) |
|
tes (0.207814) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
col (0.195008) |
|
cmu (0.186393) |
|
ski (0.146735) |
|
pty (0.142714) |
|
nca (0.136874) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
cov (0.132153) |
|
ret (0.128733) |
|
bla (0.124347) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ldo (0.0970026) |
