Ss1.1-Tra1-TCH01F070056.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATATGAGAAAAAAGTCAAGGATTTAAATGAAGAAAGAGATAAGTATAGAAAGTCATTAG AAGCAGAAATGAAGAAACTTCAAAACTCTATTCAAGAAAACACACAGAATTTTGATGAAC ATTTGAAAAAACTCTTCGAAAGGAGAGTGAAAGCAGAGATGGTTGTCAACCAGGAGGAAT TGAAGATAAACAACCTTGTTTTTTCTTTACTGTTGGATGAAGAAATAAGCTCCAGAGAAA CATTCTTGAACAACTACCTTACACGGAAGCAGGAGGAGAAAAGCCAGACAGCAGAAGTCG TCCGGAAATCAAAATAAAAGGCTTCTGAAAAAAGTTGTAATCCTGACAATGATATGTTTT TTCCTTAGGTTCTGGATCGTAGCTTTAAAAAGGAGTTTTCTGAAATTCCCAGTCATCAGG TGGATATACTATACAAACTGTTTAAACGCCGACCAAGGATTCACAGACAGAAAGTGCACG CAGATACAACCAGTCTTGTGCCTTTTGGAGAACGACCAGGATCTGGGAAATTGAATAAGG ATGCCTTTGCCCAGCTAATGAAAGCCATGGATGACTTGGACAATATTAATAACATGCCAG AAGGCTTGGACCCCTCGGTCTGGGAGCATTTCTGCGTGACCAGACGAGCAAAAGTGGAAA ATGAACAGAAAGTAAAGCAGAAAGCAGCTGGCTTAATGGAAATGGTGGCTTTCCTCCGGA GGAGAACAGAAGATGATGAGAGGGTGCAACAGGAAATTGAAAAAGTGCTCCATGAGCTCG TCCTACTACAGGAAGACAAAGTGAAATTCCAGTTGAATTTGACAATCCAGATCCTCCTTA AACAAGGACAAGTAGAGCTGGAGAATTTCCAGTTCCTGCTGGAGTATCCTGATGCAATCC TCATCAACAAGAACATAATTGAAGACTTGAATTCTGTGATTCGGGTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATATGAGAAAAAAGTCAAGGATTTAAATGAAGAAAGAGATAAGTATAGAAAGTCATTAG AAGCAGAAATGAAGAAACTTCAAAACTCTATTCAAGAAAACACACAGAATTTTGATGAAC ATTTGAAAAAACTCTTCGAAAGGAGAGTGAAAGCAGAGATGGTTGTCAACCAGGAGGAAT TGAAGATAAACAACCTTGTTTTTTCTTTACTGTTGGATGAAGAAATAAGCTCCAGAGAAA CATTCTTGAACAACTACCTTACACGGAAGCAGGAGGAGAAAAGCCAGACAGCAGAAGTCG TCCGGAAATCAAAATAAAAGGCTTCTGAAAAAAGTTGTAATCCTGACAATGATATGTTTT TTCCTTAGGTTCTGGATCGTAGCTTTAAAAAGGAGTTTTCTGAAATTCCCAGTCATCAGG TGGATATACTATACAAACTGTTTAAACGCCGACCAAGGATTCACAGACAGAAAGTGCACG CAGATACAACCAGTCTTGTGCCTTTTGGAGAACGACCAGGATCTGGGAAATTGAATAAGG ATGCCTTTGCCCAGCTAATGAAAGCCATGGATGACTTGGACAATATTAATAACATGCCAG AAGGCTTGGACCCCTCGGTCTGGGAGCATTTCTGCGTGACCAGACGAGCAAAAGTGGAAA ATGAACAGAAAGTAAAGCAGAAAGCAGCTGGCTTAATGGAAATGGTGGCTTTCCTCCGGA GGAGAACAGAAGATGATGAGAGGGTGCAACAGGAAATTGAAAAAGTGCTCCATGAGCTCG TCCTACTACAGGAAGACAAAGTGAAATTCCAGTTGAATTTGACAATCCAGATCCTCCTTA AACAAGGACAAGTAGAGCTGGAGAATTTCCAGTTCCTGCTGGAGTATCCTGATGCAATCC TCATCAACAAGAACATAATTGAAGACTTGAATTCTGTGATTCGGGTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 52-654, - strand, RNAz p=0.774781 | |
| 787-905, + strand, RNAz p=0.970297 | |
| 809-927, - strand, RNAz p=0.96067 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 52-654, - strand, RNAz p=0.774781 | |
| 787-905, + strand, RNAz p=0.970297 | |
| 809-927, - strand, RNAz p=0.96067 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 52-174, gnl|bosTau2|chr26 (16150267-16150389) | |
| 52-174, gnl|canFam2|chr28 (19467528-19467696) | |
| 52-174, gnl|danRer3|chr13 (27772283-27772138) | |
| 52-174, gnl|dasNov1|scaffold_292347 (956-789) | |
| 52-174, gnl|echTel1|scaffold_314350 (18069-17900) | |
| 52-174, gnl|fr1|chrUn (8935477-8935620) | |
| 52-174, gnl|galGal2|chr6 (23267110-23267290) | |
| 52-174, gnl|hg17|chr10 (105902341-105902509) | |
| 52-174, gnl|Hg17|chr10 (105902476-105902354) | |
| 52-174, gnl|mm7|chr19 (47656485-47656632) | |
| 52-174, gnl|Mm7|chr19 (47656620-47656498) | |
| 52-174, gnl|monDom2|scaffold_14 (58988399-58988233) | |
| 52-174, gnl|oryCun1|scaffold_202275 (5042-5210) | |
| 52-174, gnl|panTro1|chr8 (107704513-107704681) | |
| 52-174, gnl|rheMac2|chr9 (103852828-103852996) | |
| 52-174, gnl|rn3|chr1 (253387565-253387717) | |
| 52-174, gnl|tetNig1|chr17 (6843874-6843745) | |
| 456-674, gnl|bosTau2|chr26 (16157850-16158068) | |
| 456-674, gnl|canFam2|chr28 (19459386-19459521) | |
| 456-674, gnl|danRer3|chr13 (27775708-27775561) | |
| 456-674, gnl|dasNov1|scaffold_16812 (48726-48591) | |
| 456-674, gnl|echTel1|scaffold_139033 (682-818) | |
| 456-674, gnl|fr1|chrUn (8934415-8934549) | |
| 456-674, gnl|galGal2|chr6 (23265103-23265238) | |
| 456-674, gnl|hg17|chr10 (105893171-105893306) | |
| 456-674, gnl|Hg17|chr10 (105893389-105893171) | |
| 456-674, gnl|loxAfr1|scaffold_5973 (8777-8642) | |
| 456-674, gnl|mm7|chr19 (47648336-47648471) | |
| 456-674, gnl|Mm7|chr19 (47648554-47648336) | |
| 456-674, gnl|monDom2|scaffold_14 (58995257-58995123) | |
| 456-674, gnl|oryCun1|scaffold_96887 (5105-5240) | |
| 456-674, gnl|panTro1|chr8 (107695255-107695390) | |
| 456-674, gnl|rheMac2|chr9 (103843057-103843192) | |
| 456-674, gnl|rn3|chr1 (253380930-253381065) | |
| 456-674, gnl|xenTro1|scaffold_350 (1152392-1152257) | |
| 787-948, gnl|bosTau2|chr26 (16160574-16160735) | |
| 787-948, gnl|canFam2|chr28 (19456971-19457479) | |
| 787-948, gnl|dasNov1|scaffold_16812 (44628-44136) | |
| 787-948, gnl|galGal2|chr6 (23263358-23263820) | |
| 787-948, gnl|hg17|chr10 (105890573-105891079) | |
| 787-948, gnl|Hg17|chr10 (105890747-105890586) | |
| 787-948, gnl|loxAfr1|scaffold_5973 (11275-10810) | |
| 787-948, gnl|mm7|chr19 (47645933-47646397) | |
| 787-948, gnl|Mm7|chr19 (47646098-47645937) | |
| 787-948, gnl|monDom2|scaffold_14 (59001500-59000985) | |
| 787-948, gnl|panTro1|chr8 (107692637-107693143) | |
| 787-948, gnl|rheMac2|chr9 (103840478-103840969) | |
| 787-948, gnl|rn3|chr1 (253378698-253379172) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 52-174, gnl|bosTau2|chr26 (16150267-16150389) | |
| 52-174, gnl|canFam2|chr28 (19467528-19467696) | |
| 52-174, gnl|danRer3|chr13 (27772283-27772138) | |
| 52-174, gnl|dasNov1|scaffold_292347 (956-789) | |
| 52-174, gnl|echTel1|scaffold_314350 (18069-17900) | |
| 52-174, gnl|fr1|chrUn (8935477-8935620) | |
| 52-174, gnl|galGal2|chr6 (23267110-23267290) | |
| 52-174, gnl|hg17|chr10 (105902341-105902509) | |
| 52-174, gnl|Hg17|chr10 (105902476-105902354) | |
| 52-174, gnl|mm7|chr19 (47656485-47656632) | |
| 52-174, gnl|Mm7|chr19 (47656620-47656498) | |
| 52-174, gnl|monDom2|scaffold_14 (58988399-58988233) | |
| 52-174, gnl|oryCun1|scaffold_202275 (5042-5210) | |
| 52-174, gnl|panTro1|chr8 (107704513-107704681) | |
| 52-174, gnl|rheMac2|chr9 (103852828-103852996) | |
| 52-174, gnl|rn3|chr1 (253387565-253387717) | |
| 52-174, gnl|tetNig1|chr17 (6843874-6843745) | |
| 456-674, gnl|bosTau2|chr26 (16157850-16158068) | |
| 456-674, gnl|canFam2|chr28 (19459386-19459521) | |
| 456-674, gnl|danRer3|chr13 (27775708-27775561) | |
| 456-674, gnl|dasNov1|scaffold_16812 (48726-48591) | |
| 456-674, gnl|echTel1|scaffold_139033 (682-818) | |
| 456-674, gnl|fr1|chrUn (8934415-8934549) | |
| 456-674, gnl|galGal2|chr6 (23265103-23265238) | |
| 456-674, gnl|hg17|chr10 (105893171-105893306) | |
| 456-674, gnl|Hg17|chr10 (105893389-105893171) | |
| 456-674, gnl|loxAfr1|scaffold_5973 (8777-8642) | |
| 456-674, gnl|mm7|chr19 (47648336-47648471) | |
| 456-674, gnl|Mm7|chr19 (47648554-47648336) | |
| 456-674, gnl|monDom2|scaffold_14 (58995257-58995123) | |
| 456-674, gnl|oryCun1|scaffold_96887 (5105-5240) | |
| 456-674, gnl|panTro1|chr8 (107695255-107695390) | |
| 456-674, gnl|rheMac2|chr9 (103843057-103843192) | |
| 456-674, gnl|rn3|chr1 (253380930-253381065) | |
| 456-674, gnl|xenTro1|scaffold_350 (1152392-1152257) | |
| 787-948, gnl|bosTau2|chr26 (16160574-16160735) | |
| 787-948, gnl|canFam2|chr28 (19456971-19457479) | |
| 787-948, gnl|dasNov1|scaffold_16812 (44628-44136) | |
| 787-948, gnl|galGal2|chr6 (23263358-23263820) | |
| 787-948, gnl|hg17|chr10 (105890573-105891079) | |
| 787-948, gnl|Hg17|chr10 (105890747-105890586) | |
| 787-948, gnl|loxAfr1|scaffold_5973 (11275-10810) | |
| 787-948, gnl|mm7|chr19 (47645933-47646397) | |
| 787-948, gnl|Mm7|chr19 (47646098-47645937) | |
| 787-948, gnl|monDom2|scaffold_14 (59001500-59000985) | |
| 787-948, gnl|panTro1|chr8 (107692637-107693143) | |
| 787-948, gnl|rheMac2|chr9 (103840478-103840969) | |
| 787-948, gnl|rn3|chr1 (253378698-253379172) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.146284) |