Non-Coding RNA Search

Ss1.1-Tra1-TCH01F070070.5

Sequence:


               
               ATCTCTCCTTTTCAATCTACATCAGCCAGCACTGCCTCTTTTGCTCACTTGCTGCCTGTT
CAGAGTGAGTGGCATGAAGTGTCATGCTATACCTAACAGATCTTTAGAATATTCTTGAAT
ACTCCTAAGAAAGAGTAACTTAGTAGGTCTTTTCTACTTTTAAAACTCTCCATGCATTAT
TCTGGTGGTCAGACAGGTTTGGGAAACACTAAGTAAAAGATATGTAACTCATAGAGGGTG
GGAGAGGGTAATAAGCCTGATTTCAAGGGCCCATATGAGGCATCAGTGTATACTAGGCAG
GTAGAAATCTCTGGCTTTGGCAATTTTAGGAGAGGATGCTAGCCTTTGAATCTGGGAGAA
GAAGCCAGTGCTTTCAAAGGGAAGGAGAAAGAGGGCTTGAGGCCAAAGTGGTAAACAGCT
TAGAAAGCAGCCTTTCCTCATTTATTCAACAGTCTTTATTTAGTGACTCTCCAAGTCCTG
GTGATTATTATCCTTCACTCCATGTTTGGCTTAAATAGGGTAGTTCTGCTTTGCTACTGC
CCATTGCCTAACTCAGCTTGCAGTAGTAGAGTCTGCAGAGATAGCAGGCTTAATAAGCTA
GAGGATAGGTCACAGAGTCCCCAAAACCATCATGCCCTATTTCGATGTGACTAGACAGTG
GTTATTTCTTGCCTATTGATATTTTAAAGGAGGAGAATGGTATAGATCTTTGCAGCTAGA
CCTGGGTTGAAATCTCAGCTGTGATAGTTACTGTTCTTGATATTTTGAGGAAGTTACCCA
AAATCTCTGGGCCTCTATCTTCTAATCTCTAAAAGGAGGATATGAACATATCTAAGATAC
AGAGTTTTAATTATGCCCAAACTCTAGCCAGTAGACCCTCTTACCAAAGGTCCAACTGGT
CTAGCCCATCCTGACTTCTCTCAGAATCTCCAACTCAGGTAAGGTATTGACAGCAGGCTG
TAGATTAAAAAGCCTACATAAGGAATTTTGAATACAGCACACACACACCCCCACCCGCCT
TTCCTGAGTTCCTCTCCAGCACCCCTTGGGGGTCCTCATGTGTTTGTGGAGCGGCTTTAC
TCTGCAAAGGCAGCAAAAGGATGGTGGAGCCATAGCTCTGGGCCATAGGGGCAGATTTAT
TTGGATGATAGGACTAATATTTGTGTAACCTGCTGAGACCTATGTGGGAGAGTTTAGGGT
GGTTTTTCTTTTGGTGAGGGGGTTTGCTCTGGTTTCACATCCATTAACACAAAACATGAG
CTAGTCAGGGCCCTTGTGGTCTGCGGTGAGGGGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCTCCTTTTCAATCTACATCAGCCAGCACTGCCTCTTTTGCTCACTTGCTGCCTGTT
CAGAGTGAGTGGCATGAAGTGTCATGCTATACCTAACAGATCTTTAGAATATTCTTGAAT
ACTCCTAAGAAAGAGTAACTTAGTAGGTCTTTTCTACTTTTAAAACTCTCCATGCATTAT
TCTGGTGGTCAGACAGGTTTGGGAAACACTAAGTAAAAGATATGTAACTCATAGAGGGTG
GGAGAGGGTAATAAGCCTGATTTCAAGGGCCCATATGAGGCATCAGTGTATACTAGGCAG
GTAGAAATCTCTGGCTTTGGCAATTTTAGGAGAGGATGCTAGCCTTTGAATCTGGGAGAA
GAAGCCAGTGCTTTCAAAGGGAAGGAGAAAGAGGGCTTGAGGCCAAAGTGGTAAACAGCT
TAGAAAGCAGCCTTTCCTCATTTATTCAACAGTCTTTATTTAGTGACTCTCCAAGTCCTG
GTGATTATTATCCTTCACTCCATGTTTGGCTTAAATAGGGTAGTTCTGCTTTGCTACTGC
CCATTGCCTAACTCAGCTTGCAGTAGTAGAGTCTGCAGAGATAGCAGGCTTAATAAGCTA
GAGGATAGGTCACAGAGTCCCCAAAACCATCATGCCCTATTTCGATGTGACTAGACAGTG
GTTATTTCTTGCCTATTGATATTTTAAAGGAGGAGAATGGTATAGATCTTTGCAGCTAGA
CCTGGGTTGAAATCTCAGCTGTGATAGTTACTGTTCTTGATATTTTGAGGAAGTTACCCA
AAATCTCTGGGCCTCTATCTTCTAATCTCTAAAAGGAGGATATGAACATATCTAAGATAC
AGAGTTTTAATTATGCCCAAACTCTAGCCAGTAGACCCTCTTACCAAAGGTCCAACTGGT
CTAGCCCATCCTGACTTCTCTCAGAATCTCCAACTCAGGTAAGGTATTGACAGCAGGCTG
TAGATTAAAAAGCCTACATAAGGAATTTTGAATACAGCACACACACACCCCCACCCGCCT
TTCCTGAGTTCCTCTCCAGCACCCCTTGGGGGTCCTCATGTGTTTGTGGAGCGGCTTTAC
TCTGCAAAGGCAGCAAAAGGATGGTGGAGCCATAGCTCTGGGCCATAGGGGCAGATTTAT
TTGGATGATAGGACTAATATTTGTGTAACCTGCTGAGACCTATGTGGGAGAGTTTAGGGT
GGTTTTTCTTTTGGTGAGGGGGTTTGCTCTGGTTTCACATCCATTAACACAAAACATGAG
CTAGTCAGGGCCCTTGTGGTCTGCGGTGAGGGGATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               498-611, - strand, RNAz p=0.753285
               

               
               1084-1189, - strand, RNAz p=0.861878

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               498-611, - strand, RNAz p=0.753285
               

               
               1084-1189, - strand, RNAz p=0.861878

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1296, gnl|bosTau2|chr3 (27607456-27606177)
               

               
               1-1296, gnl|Hg17|chr1 (112775799-112777451)
               

               
               1-1296, gnl|Mm7|chr3 (104739665-104738450)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1296, gnl|bosTau2|chr3 (27607456-27606177)
               

               
               1-1296, gnl|Hg17|chr1 (112775799-112777451)
               

               
               1-1296, gnl|Mm7|chr3 (104739665-104738450)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ctl (0.153069)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)
               

               
               eep (0.122564)

	498-611, - strand, RNAz p=0.753285
	1084-1189, - strand, RNAz p=0.861878

	1-1296, gnl\|bosTau2\|chr3 (27607456-27606177)
	1-1296, gnl\|Hg17\|chr1 (112775799-112777451)
	1-1296, gnl\|Mm7\|chr3 (104739665-104738450)