Ss1.1-Tra1-TCH01F070086.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATTGTCCAAGGAGCCTGTCGGACGAAGACGCCGAGACGCTGGAAGGTTGCTGGCGCAG CTGCGGAGGGCGGCGTCACTGAGCCGCGCCGGCGGCGCCGGTTGCAGACCCGCTCCTCTC GCCTGCTTTCTCCGGGGCTCGCTTCTTCACCCAGGGTCCGTCGAGCCTTTTCCATGTCCC GGGTAGACGCAGTCCTCCGCACCCTCCACGCCCATGGCCACTAGCCTGAGGAGGCCGTCT TTCACCGGCTGTTCTTCCTCCCCTCCGGACGCGGACGACGAGGGCGTGCGCGGCACTTGC GAAGATGCTTCTCTGTGCAAGCGATTTGCGGTGAGCATTGGCTACTGGCAGGACCCTTAC ATCCCGCATTTGGTGAGACTGTCTAAAGAGAGGAAGGCCCCCGAAATTAACAGAGGATAT TTTGCTCGTGTCCACGGCGTCAGTCAGCTTATCAAGGCGTTTCTACGGAAGACAGGATGC AACTGTCAAATTCTAAACCTTGGGGCTGGGATGGATACCACCTTCTGGAGGTTAAAGGAT GAAGATCTTCTACCAAGTAAATATTTTGAAATAGACTTTCCAATGATCGTCACGAGAAAG CTGCATAGCATCAAATTGAAACCTCTTCTTTCAAAACCCATTTTAGACTTACATTCAGAG GACACACTTCAAATGGACGGGCACACATTGGATTCAACGAGATATGCCATCATTGGAGCC GATCTCCGAGATATTCCTGAACTGGAAGAGAAACTAAAGAAATGTAACATGAATACACAA TTGCCCACCCTCCTGGTGGCTGAATGTGTGCTGGTTTACATGACTCCGGAGCAGTCTGCA AACCTTCTCAAGTGGGCCGCCAACAGTTTCGAGACTGCCATGTTCATAAACTACGAACAG GTGAACATGGATGACCGGTTTGGGCAGATCATGATTGAGAACCTGCGGCGGCGACAGTGT GACCTGGCGGGAGTCGAGACCTGCAAGTCGTTAGAGTCGCAGAAAGAACGGCTCCTGTCC AGTGGGTGGGAATCGGCTTCAGCCGTGGACATGATGGAATTGTACAGCAAGTTACCTCGC GCGGAAGTGAGCAGAATAGAGTCCCTTGAATTCCTGGATGAAATGGAGCTTCTTGAGCAA CTCATGCAGCATTACTGCCTTTGCTGGGCAACCAAAGGAGGCAGTAATCTGGGTTTGAAA GAAATTACTTATTGATCTGTTCAAGATGCGTGCGGATCCAGAGCCAAAGCCACCACCCTC TCTGGAGCTGAGTCTCTGAGTTTCCCAGGCGGTGGTTAAGCCTCTGCTTCCAGTACCCCT GCCCTTGGCCGAGAGACCTCAGTTCCTGGGGTGTCTGTTCCAGTTCCTGTTCCTGTTGGC CTGTTGTTGAAATAAATTTCAGTTGCCAGTCAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATTGTCCAAGGAGCCTGTCGGACGAAGACGCCGAGACGCTGGAAGGTTGCTGGCGCAG CTGCGGAGGGCGGCGTCACTGAGCCGCGCCGGCGGCGCCGGTTGCAGACCCGCTCCTCTC GCCTGCTTTCTCCGGGGCTCGCTTCTTCACCCAGGGTCCGTCGAGCCTTTTCCATGTCCC GGGTAGACGCAGTCCTCCGCACCCTCCACGCCCATGGCCACTAGCCTGAGGAGGCCGTCT TTCACCGGCTGTTCTTCCTCCCCTCCGGACGCGGACGACGAGGGCGTGCGCGGCACTTGC GAAGATGCTTCTCTGTGCAAGCGATTTGCGGTGAGCATTGGCTACTGGCAGGACCCTTAC ATCCCGCATTTGGTGAGACTGTCTAAAGAGAGGAAGGCCCCCGAAATTAACAGAGGATAT TTTGCTCGTGTCCACGGCGTCAGTCAGCTTATCAAGGCGTTTCTACGGAAGACAGGATGC AACTGTCAAATTCTAAACCTTGGGGCTGGGATGGATACCACCTTCTGGAGGTTAAAGGAT GAAGATCTTCTACCAAGTAAATATTTTGAAATAGACTTTCCAATGATCGTCACGAGAAAG CTGCATAGCATCAAATTGAAACCTCTTCTTTCAAAACCCATTTTAGACTTACATTCAGAG GACACACTTCAAATGGACGGGCACACATTGGATTCAACGAGATATGCCATCATTGGAGCC GATCTCCGAGATATTCCTGAACTGGAAGAGAAACTAAAGAAATGTAACATGAATACACAA TTGCCCACCCTCCTGGTGGCTGAATGTGTGCTGGTTTACATGACTCCGGAGCAGTCTGCA AACCTTCTCAAGTGGGCCGCCAACAGTTTCGAGACTGCCATGTTCATAAACTACGAACAG GTGAACATGGATGACCGGTTTGGGCAGATCATGATTGAGAACCTGCGGCGGCGACAGTGT GACCTGGCGGGAGTCGAGACCTGCAAGTCGTTAGAGTCGCAGAAAGAACGGCTCCTGTCC AGTGGGTGGGAATCGGCTTCAGCCGTGGACATGATGGAATTGTACAGCAAGTTACCTCGC GCGGAAGTGAGCAGAATAGAGTCCCTTGAATTCCTGGATGAAATGGAGCTTCTTGAGCAA CTCATGCAGCATTACTGCCTTTGCTGGGCAACCAAAGGAGGCAGTAATCTGGGTTTGAAA GAAATTACTTATTGATCTGTTCAAGATGCGTGCGGATCCAGAGCCAAAGCCACCACCCTC TCTGGAGCTGAGTCTCTGAGTTTCCCAGGCGGTGGTTAAGCCTCTGCTTCCAGTACCCCT GCCCTTGGCCGAGAGACCTCAGTTCCTGGGGTGTCTGTTCCAGTTCCTGTTCCTGTTGGC CTGTTGTTGAAATAAATTTCAGTTGCCAGTCAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 1-321, gnl|bosTau2|chr25 (22375652-22375341) | |
| 1-321, gnl|Hg17|chr16 (25030490-25030816) | |
| 1-321, gnl|Mm7|chr7 (119480605-119480919) | |
| 414-538, gnl|bosTau2|chr25 (22338238-22338114) | |
| 414-538, gnl|canFam2|chr6 (24074145-24073990) | |
| 414-538, gnl|dasNov1|scaffold_253606 (744-895) | |
| 414-538, gnl|echTel1|scaffold_263085 (4247-4095) | |
| 414-538, gnl|fr1|chrUn (65022079-65022218) | |
| 414-538, gnl|hg17|chr16 (25051210-25051368) | |
| 414-538, gnl|Hg17|chr16 (25051222-25051346) | |
| 414-538, gnl|loxAfr1|scaffold_2196 (57772-57619) | |
| 414-538, gnl|mm7|chr7 (119504097-119504254) | |
| 414-538, gnl|Mm7|chr7 (119504108-119504232) | |
| 414-538, gnl|monDom2|scaffold_49 (2303894-2304027) | |
| 414-538, gnl|oryCun1|scaffold_186780 (47490-47336) | |
| 414-538, gnl|panTro1|chr18 (25706373-25706531) | |
| 414-538, gnl|rheMac2|chr20 (23609096-23609251) | |
| 414-538, gnl|rn3|chr1 (182401679-182401836) | |
| 414-538, gnl|tetNig1|chr2 (3557124-3556999) | |
| 676-779, gnl|bosTau2|chr25 (22317182-22317079) | |
| 676-779, gnl|canFam2|chr6 (24061944-24061812) | |
| 676-779, gnl|danRer3|chr12 (15292236-15292125) | |
| 676-779, gnl|dasNov1|scaffold_9115 (45876-46010) | |
| 676-779, gnl|echTel1|scaffold_205156 (666-537) | |
| 676-779, gnl|galGal2|chr14 (8665621-8665750) | |
| 676-779, gnl|hg17|chr16 (25079913-25080046) | |
| 676-779, gnl|Hg17|chr16 (25079923-25080026) | |
| 676-779, gnl|loxAfr1|scaffold_2196 (31869-31735) | |
| 676-779, gnl|mm7|chr7 (119513379-119513511) | |
| 676-779, gnl|Mm7|chr7 (119513389-119513492) | |
| 676-779, gnl|monDom2|scaffold_49 (2347045-2347177) | |
| 676-779, gnl|panTro1|chr18 (25735402-25735534) | |
| 676-779, gnl|rheMac2|chr20 (23641473-23641605) | |
| 676-779, gnl|rn3|chr1 (182416532-182416663) | |
| 676-779, gnl|tetNig1|chr2 (3556247-3556125) | |
| 676-779, gnl|xenTro1|scaffold_12 (2048545-2048412) | |
| 780-902, gnl|bosTau2|chr25 (22310753-22310631) | |
| 780-902, gnl|canFam2|chr6 (24054817-24054669) | |
| 780-902, gnl|danRer3|chr12 (15285558-15285432) | |
| 780-902, gnl|dasNov1|scaffold_9115 (52053-52201) | |
| 780-902, gnl|echTel1|scaffold_159271 (3938-3793) | |
| 780-902, gnl|fr1|chrUn (65023500-65023627) | |
| 780-902, gnl|galGal2|chr14 (8667161-8667293) | |
| 780-902, gnl|hg17|chr16 (25083419-25083567) | |
| 780-902, gnl|Hg17|chr16 (25083420-25083542) | |
| 780-902, gnl|loxAfr1|scaffold_2196 (24729-24581) | |
| 780-902, gnl|mm7|chr7 (119520883-119521025) | |
| 780-902, gnl|Mm7|chr7 (119520884-119521006) | |
| 780-902, gnl|monDom2|scaffold_49 (2374248-2374393) | |
| 780-902, gnl|oryCun1|scaffold_186780 (26878-26731) | |
| 780-902, gnl|panTro1|chr18 (25738906-25739054) | |
| 780-902, gnl|rheMac2|chr20 (23645023-23645171) | |
| 780-902, gnl|rn3|chr1 (182423827-182423972) | |
| 780-902, gnl|tetNig1|chr2 (3555964-3555837) | |
| 780-902, gnl|xenTro1|scaffold_12 (2047335-2047209) | |
| 1192-1410, gnl|bosTau2|chr25 (22300355-22300140) | |
| 1192-1410, gnl|Hg17|chr16 (25096822-25097052) | |
| 1192-1410, gnl|Mm7|chr7 (119532798-119533008) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-321, gnl|bosTau2|chr25 (22375652-22375341) | |
| 1-321, gnl|Hg17|chr16 (25030490-25030816) | |
| 1-321, gnl|Mm7|chr7 (119480605-119480919) | |
| 414-538, gnl|bosTau2|chr25 (22338238-22338114) | |
| 414-538, gnl|canFam2|chr6 (24074145-24073990) | |
| 414-538, gnl|dasNov1|scaffold_253606 (744-895) | |
| 414-538, gnl|echTel1|scaffold_263085 (4247-4095) | |
| 414-538, gnl|fr1|chrUn (65022079-65022218) | |
| 414-538, gnl|hg17|chr16 (25051210-25051368) | |
| 414-538, gnl|Hg17|chr16 (25051222-25051346) | |
| 414-538, gnl|loxAfr1|scaffold_2196 (57772-57619) | |
| 414-538, gnl|mm7|chr7 (119504097-119504254) | |
| 414-538, gnl|Mm7|chr7 (119504108-119504232) | |
| 414-538, gnl|monDom2|scaffold_49 (2303894-2304027) | |
| 414-538, gnl|oryCun1|scaffold_186780 (47490-47336) | |
| 414-538, gnl|panTro1|chr18 (25706373-25706531) | |
| 414-538, gnl|rheMac2|chr20 (23609096-23609251) | |
| 414-538, gnl|rn3|chr1 (182401679-182401836) | |
| 414-538, gnl|tetNig1|chr2 (3557124-3556999) | |
| 676-779, gnl|bosTau2|chr25 (22317182-22317079) | |
| 676-779, gnl|canFam2|chr6 (24061944-24061812) | |
| 676-779, gnl|danRer3|chr12 (15292236-15292125) | |
| 676-779, gnl|dasNov1|scaffold_9115 (45876-46010) | |
| 676-779, gnl|echTel1|scaffold_205156 (666-537) | |
| 676-779, gnl|galGal2|chr14 (8665621-8665750) | |
| 676-779, gnl|hg17|chr16 (25079913-25080046) | |
| 676-779, gnl|Hg17|chr16 (25079923-25080026) | |
| 676-779, gnl|loxAfr1|scaffold_2196 (31869-31735) | |
| 676-779, gnl|mm7|chr7 (119513379-119513511) | |
| 676-779, gnl|Mm7|chr7 (119513389-119513492) | |
| 676-779, gnl|monDom2|scaffold_49 (2347045-2347177) | |
| 676-779, gnl|panTro1|chr18 (25735402-25735534) | |
| 676-779, gnl|rheMac2|chr20 (23641473-23641605) | |
| 676-779, gnl|rn3|chr1 (182416532-182416663) | |
| 676-779, gnl|tetNig1|chr2 (3556247-3556125) | |
| 676-779, gnl|xenTro1|scaffold_12 (2048545-2048412) | |
| 780-902, gnl|bosTau2|chr25 (22310753-22310631) | |
| 780-902, gnl|canFam2|chr6 (24054817-24054669) | |
| 780-902, gnl|danRer3|chr12 (15285558-15285432) | |
| 780-902, gnl|dasNov1|scaffold_9115 (52053-52201) | |
| 780-902, gnl|echTel1|scaffold_159271 (3938-3793) | |
| 780-902, gnl|fr1|chrUn (65023500-65023627) | |
| 780-902, gnl|galGal2|chr14 (8667161-8667293) | |
| 780-902, gnl|hg17|chr16 (25083419-25083567) | |
| 780-902, gnl|Hg17|chr16 (25083420-25083542) | |
| 780-902, gnl|loxAfr1|scaffold_2196 (24729-24581) | |
| 780-902, gnl|mm7|chr7 (119520883-119521025) | |
| 780-902, gnl|Mm7|chr7 (119520884-119521006) | |
| 780-902, gnl|monDom2|scaffold_49 (2374248-2374393) | |
| 780-902, gnl|oryCun1|scaffold_186780 (26878-26731) | |
| 780-902, gnl|panTro1|chr18 (25738906-25739054) | |
| 780-902, gnl|rheMac2|chr20 (23645023-23645171) | |
| 780-902, gnl|rn3|chr1 (182423827-182423972) | |
| 780-902, gnl|tetNig1|chr2 (3555964-3555837) | |
| 780-902, gnl|xenTro1|scaffold_12 (2047335-2047209) | |
| 1192-1410, gnl|bosTau2|chr25 (22300355-22300140) | |
| 1192-1410, gnl|Hg17|chr16 (25096822-25097052) | |
| 1192-1410, gnl|Mm7|chr7 (119532798-119533008) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| hyp (0.285673) | |
| cst (0.280073) | |
| ece (0.229305) | |
| ill (0.175593) | |
| cje (0.165235) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| ute (0.132784) | |
| cov (0.132153) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.285673) | |
| cst (0.280073) | |
| ece (0.229305) | |
| ill (0.175593) | |
| cje (0.165235) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| ute (0.132784) | |
| cov (0.132153) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jca (0.11396) | |
| eje (0.0988338) |