Non-Coding RNA Search

Ss1.1-Tra1-TCH01F080047.5

Sequence:


               
               AGGGATTTGGGGGCAAAGCGCGGCCCCGAGAGCAGTTGCGGCGGGAGAGCGGCGGGCCGA
GAGCGTGAGTCGCCCGCCCGGCGCTGCTGCTGCCCCGCCGCCCGCCGCGCGCAGCCATGT
CCGAGGAGAAGCCCAAGGAGGGGGTGAAGACGGAGAATGACCACATCAACCTGAAGGTGG
CCGGGCAGGACGGCTCCGTGGTCCAGTTCAAGATCAAGAGACACACGCCGCTCAGCAAGC
TGATGAAGGCCTACTGCGAGCGCCAGGGCTTGTCGATGAGACAGATTCGGTTCAGGTTTG
ACGGACAGCCGATCAATGAAGCAGACACCCCAGCACAGCTGGAGATGGAGGACGAGGACA
CCATCGACGTGTTCCAGCAGCAGACGGGGGGCTCGAGGCGAGCCGGCCGCCTCTCGGGGT
GCCGCCTCTAGAGGGACTGTCCCCGGGTCACCGCGCCTGGTTGCTGTTGAACGGTGAAGC
GTGACCACGCCGACCAGGAAGGAGGCTGCAGACACCCGGGGACCTTCAGCCAAGGGCTTT
CCTCGGTGACACGCGTCGAGCGCGGCTCCGCTCGGCCCGTCTCGGCGGGTACCTTTGTTC
GGGTAAAATGCAGCGCCAGGGCTTTGGGGTTGGCTTTTCCTTTCATTTTTGGTTTTTCTT
CCTCTGATACCGTTTCCTTCAAACCCGAGGCCTGACCGTCCACCCTGGGCGCCGGCCCCT
TGTCCCAATCATGCAGCGAGCTCCCCGCCCGCCCGGCTGCGCTGCGCCTGGGGCCGTGCT
TTGGGGGCACAGCTGGGGTGGGAGACAGACGCCTTTCTTGTGAGCACAGGACTTTTCAAT
GCTAAATGTTACACAGGGAAGCTTTGACAGAATAGAGTCAAGTTGCAGGGAAAACACTGG
AATGTTTCTTAAAAGGTAAGAAGTTTTTCAGGGACGTGGCCCCGGGGGGCCTGGGGCCCA
GGCCCTACCACGGCCCACCGCCCACGGCCCAGCGCCGCTGCCCGGGCACAGCTTGGTGCA
GAGAAAATTGGCTTTCCCCCTTTTCTGAGTTAGCAGGAAGTCATTCCCACATTTCTCACG
GGTCATAGTGCCAGGGCCTCAGATTTCTTCTGGTGTTTTCTTCTGATGAGTAATGATGGT
CTGTACATAAAAAGGAAGATGAACATTGCTGGGTTTGCGGTTGGGTTTTTGCGTAAAGGA
GCCGCTTCCAAGGGCGGCCGCAGGCGAAGACGCCGCGGGGGCCTGGCAGCTGCGCCCCGC
TCGCCCGGTCGGTGTGCAGCGTGCGCTCTGAGCTCAGCAGCTGGGGTGGGCCCCGTCCTG
CTGGGACGGTCCTCCTCCCGGCCTTCCGTGCGGACCCGCTGCTGCCCGCTGGCCCGGGCC
TCCGCTGCCCGTCTGGTCCCCCGGCCGCCGCCGCCGCCGCCTCTCGCTTGCCCGCCGTCT
TGCTGAAGGTGTCTGCGTCCCCTTGGCGTTTTGCTCTTCGGGCGCCAGGGGGATGTCTCC
GCCCCTGTTTGTCCATCACTCGTGTCCCTCACCACTGTCGCAGTAAATACAGTTTGGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGATTTGGGGGCAAAGCGCGGCCCCGAGAGCAGTTGCGGCGGGAGAGCGGCGGGCCGA
GAGCGTGAGTCGCCCGCCCGGCGCTGCTGCTGCCCCGCCGCCCGCCGCGCGCAGCCATGT
CCGAGGAGAAGCCCAAGGAGGGGGTGAAGACGGAGAATGACCACATCAACCTGAAGGTGG
CCGGGCAGGACGGCTCCGTGGTCCAGTTCAAGATCAAGAGACACACGCCGCTCAGCAAGC
TGATGAAGGCCTACTGCGAGCGCCAGGGCTTGTCGATGAGACAGATTCGGTTCAGGTTTG
ACGGACAGCCGATCAATGAAGCAGACACCCCAGCACAGCTGGAGATGGAGGACGAGGACA
CCATCGACGTGTTCCAGCAGCAGACGGGGGGCTCGAGGCGAGCCGGCCGCCTCTCGGGGT
GCCGCCTCTAGAGGGACTGTCCCCGGGTCACCGCGCCTGGTTGCTGTTGAACGGTGAAGC
GTGACCACGCCGACCAGGAAGGAGGCTGCAGACACCCGGGGACCTTCAGCCAAGGGCTTT
CCTCGGTGACACGCGTCGAGCGCGGCTCCGCTCGGCCCGTCTCGGCGGGTACCTTTGTTC
GGGTAAAATGCAGCGCCAGGGCTTTGGGGTTGGCTTTTCCTTTCATTTTTGGTTTTTCTT
CCTCTGATACCGTTTCCTTCAAACCCGAGGCCTGACCGTCCACCCTGGGCGCCGGCCCCT
TGTCCCAATCATGCAGCGAGCTCCCCGCCCGCCCGGCTGCGCTGCGCCTGGGGCCGTGCT
TTGGGGGCACAGCTGGGGTGGGAGACAGACGCCTTTCTTGTGAGCACAGGACTTTTCAAT
GCTAAATGTTACACAGGGAAGCTTTGACAGAATAGAGTCAAGTTGCAGGGAAAACACTGG
AATGTTTCTTAAAAGGTAAGAAGTTTTTCAGGGACGTGGCCCCGGGGGGCCTGGGGCCCA
GGCCCTACCACGGCCCACCGCCCACGGCCCAGCGCCGCTGCCCGGGCACAGCTTGGTGCA
GAGAAAATTGGCTTTCCCCCTTTTCTGAGTTAGCAGGAAGTCATTCCCACATTTCTCACG
GGTCATAGTGCCAGGGCCTCAGATTTCTTCTGGTGTTTTCTTCTGATGAGTAATGATGGT
CTGTACATAAAAAGGAAGATGAACATTGCTGGGTTTGCGGTTGGGTTTTTGCGTAAAGGA
GCCGCTTCCAAGGGCGGCCGCAGGCGAAGACGCCGCGGGGGCCTGGCAGCTGCGCCCCGC
TCGCCCGGTCGGTGTGCAGCGTGCGCTCTGAGCTCAGCAGCTGGGGTGGGCCCCGTCCTG
CTGGGACGGTCCTCCTCCCGGCCTTCCGTGCGGACCCGCTGCTGCCCGCTGGCCCGGGCC
TCCGCTGCCCGTCTGGTCCCCCGGCCGCCGCCGCCGCCGCCTCTCGCTTGCCCGCCGTCT
TGCTGAAGGTGTCTGCGTCCCCTTGGCGTTTTGCTCTTCGGGCGCCAGGGGGATGTCTCC
GCCCCTGTTTGTCCATCACTCGTGTCCCTCACCACTGTCGCAGTAAATACAGTTTGGGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|53136826|emb|CAG32742.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|53136826|emb|CAG32742.1|

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               32-695, gnl|bosTau2|chr14 (43348080-43348794)
               


               
               716-1509, gnl|bosTau2|chr1 (94700137-94699331)
               

               
               716-1509, gnl|Hg17|chr21 (45050925-45050036)
               

               
               716-1509, gnl|Mm7|chr10 (77271150-77271936)
               


               
               718-1280, gnl|bosTau2|chr14 (43348845-43349408)
               

               
               718-1280, gnl|Hg17|chr21 (45050927-45050279)
               

               
               718-1280, gnl|Mm7|chrX (148542643-148543213)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-695, gnl|bosTau2|chr14 (43348080-43348794)
               


               
               716-1509, gnl|bosTau2|chr1 (94700137-94699331)
               

               
               716-1509, gnl|Hg17|chr21 (45050925-45050036)
               

               
               716-1509, gnl|Mm7|chr10 (77271150-77271936)
               


               
               718-1280, gnl|bosTau2|chr14 (43348845-43349408)
               

               
               718-1280, gnl|Hg17|chr21 (45050927-45050279)
               

               
               718-1280, gnl|Mm7|chrX (148542643-148543213)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               pla (1.60406)
               

               
               eru (0.360144)
               

               
               ebs (0.354904)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (1.60406)
               

               
               eru (0.360144)
               

               
               ebs (0.354904)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	32-695, gnl\|bosTau2\|chr14 (43348080-43348794)

	716-1509, gnl\|bosTau2\|chr1 (94700137-94699331)
	716-1509, gnl\|Hg17\|chr21 (45050925-45050036)
	716-1509, gnl\|Mm7\|chr10 (77271150-77271936)

	718-1280, gnl\|bosTau2\|chr14 (43348845-43349408)
	718-1280, gnl\|Hg17\|chr21 (45050927-45050279)
	718-1280, gnl\|Mm7\|chrX (148542643-148543213)

	pla (1.60406)
	eru (0.360144)
	ebs (0.354904)
	nmm (0.265604)
	ese (0.253004)
	ece (0.229305)
	nms (0.213858)
	nlu (0.191681)
	nep (0.183925)
	fty (0.17584)
	fbs (0.175346)
	hyp (0.142837)
	cov (0.132153)
	eep (0.122564)
	ecc (0.115035)
	jca (0.11396)
	jej (0.0989218)