Non-Coding RNA Search

Ss1.1-Tra1-TCH01F080095.5

Sequence:


               
               CTCTATGGTGGCGGCGGATTCGGAGGAGACTGGGGTACCGAACGCTTCTGGAGTCAGGAT
GTTCCACCGGGAGCGCTCTATCCCCCTTCGAGGCTCGGCGGCCGCTCTGTGCAACAACCT
CAGTGTGCTGCAGCTGCCTGTCCGCAACCTCACACATTTTGGAGTAGTCCATGGACCCAG
CGCCCAGCTTCTCAGCGCTGCTCCTGAGGGTGTGCCCTTGGCCCAGCGCCAACTCCACGC
GAAGCAGGGCGCTGGAGTGAGCCCCCCACTCATCACCCAGGTCCACTGGTGTGTCCTCCC
TTTCCGAGTGTTGCTGGTACTCACCTCACATCGAGGAATACAGATGTACGAGTCTGACGG
CTCTGTCATGGTCTATTGGCATGCACTGGACTCTGGAGATGCCTCTCCAGTGCAGGCTGT
GTTTGCCCGAGGAATTGCCGCCAGTGGCCACTTCATCTGTGTGGGAACGTGGTCAGGCCG
GGTACTAGTGTTTGACATCCCAGCCAAGGGTCCCAACATTGTACTGAGTGAAGAGCTGGC
TGGGCACCAGACACCAGTCACAGACATTGCCACGGAGGCTGCCCAGGGACAGGACTGCGT
GGCTGACATGGTGACAGCAGATGACTCAGGCTTGCTGTGTGTCTGGCGGTCAGGGCCCGA
ATTCAAATTACTGACGCGAATTCCAGGCTTTGGGATCCCATGCCCGTCTGTGCAGCTGTG
GCAGGGAGCCATAGCAGCAGGCTACGGGGATGGGCAGGTGCGTCTGTATGAAGCCAGTAC
AGGAACTCTGCACGTCCAGATCAACGCTCATGCCCGGGCCATCTGTGCCCTGGACCTGGC
TCCTGAGGTGGGCAAGCTGCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTATGGTGGCGGCGGATTCGGAGGAGACTGGGGTACCGAACGCTTCTGGAGTCAGGAT
GTTCCACCGGGAGCGCTCTATCCCCCTTCGAGGCTCGGCGGCCGCTCTGTGCAACAACCT
CAGTGTGCTGCAGCTGCCTGTCCGCAACCTCACACATTTTGGAGTAGTCCATGGACCCAG
CGCCCAGCTTCTCAGCGCTGCTCCTGAGGGTGTGCCCTTGGCCCAGCGCCAACTCCACGC
GAAGCAGGGCGCTGGAGTGAGCCCCCCACTCATCACCCAGGTCCACTGGTGTGTCCTCCC
TTTCCGAGTGTTGCTGGTACTCACCTCACATCGAGGAATACAGATGTACGAGTCTGACGG
CTCTGTCATGGTCTATTGGCATGCACTGGACTCTGGAGATGCCTCTCCAGTGCAGGCTGT
GTTTGCCCGAGGAATTGCCGCCAGTGGCCACTTCATCTGTGTGGGAACGTGGTCAGGCCG
GGTACTAGTGTTTGACATCCCAGCCAAGGGTCCCAACATTGTACTGAGTGAAGAGCTGGC
TGGGCACCAGACACCAGTCACAGACATTGCCACGGAGGCTGCCCAGGGACAGGACTGCGT
GGCTGACATGGTGACAGCAGATGACTCAGGCTTGCTGTGTGTCTGGCGGTCAGGGCCCGA
ATTCAAATTACTGACGCGAATTCCAGGCTTTGGGATCCCATGCCCGTCTGTGCAGCTGTG
GCAGGGAGCCATAGCAGCAGGCTACGGGGATGGGCAGGTGCGTCTGTATGAAGCCAGTAC
AGGAACTCTGCACGTCCAGATCAACGCTCATGCCCGGGCCATCTGTGCCCTGGACCTGGC
TCCTGAGGTGGGCAAGCTGCTCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|10434734|dbj|BAB14358.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10434734|dbj|BAB14358.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               165-282, + strand, RNAz p=0.87992

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-282, + strand, RNAz p=0.87992

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               56-282, gnl|bosTau2|chr11 (7901680-7901454)
               

               
               56-282, gnl|Hg17|chr2 (74560933-74561159)
               

               
               56-282, gnl|Mm7|chr6 (83181307-83181081)
               


               
               437-593, gnl|bosTau2|chr11 (7900194-7900039)
               

               
               437-593, gnl|Hg17|chr2 (74562606-74562765)
               

               
               437-593, gnl|Mm7|chr6 (83180092-83179933)
               


               
               693-856, gnl|bosTau2|chr11 (7898964-7898801)
               

               
               693-856, gnl|Hg17|chr2 (74563856-74564019)
               

               
               693-856, gnl|Mm7|chr6 (83178851-83178688)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-282, gnl|bosTau2|chr11 (7901680-7901454)
               

               
               56-282, gnl|Hg17|chr2 (74560933-74561159)
               

               
               56-282, gnl|Mm7|chr6 (83181307-83181081)
               


               
               437-593, gnl|bosTau2|chr11 (7900194-7900039)
               

               
               437-593, gnl|Hg17|chr2 (74562606-74562765)
               

               
               437-593, gnl|Mm7|chr6 (83180092-83179933)
               


               
               693-856, gnl|bosTau2|chr11 (7898964-7898801)
               

               
               693-856, gnl|Hg17|chr2 (74563856-74564019)
               

               
               693-856, gnl|Mm7|chr6 (83178851-83178688)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               hyp (0.42851)
               

               
               cga (0.279096)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               cga (0.279096)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

	56-282, gnl\|bosTau2\|chr11 (7901680-7901454)
	56-282, gnl\|Hg17\|chr2 (74560933-74561159)
	56-282, gnl\|Mm7\|chr6 (83181307-83181081)

	437-593, gnl\|bosTau2\|chr11 (7900194-7900039)
	437-593, gnl\|Hg17\|chr2 (74562606-74562765)
	437-593, gnl\|Mm7\|chr6 (83180092-83179933)

	693-856, gnl\|bosTau2\|chr11 (7898964-7898801)
	693-856, gnl\|Hg17\|chr2 (74563856-74564019)
	693-856, gnl\|Mm7\|chr6 (83178851-83178688)

	hyp (0.42851)
	cga (0.279096)
	eru (0.240096)
	ece (0.229305)
	fty (0.17584)
	cli (0.152812)
	cov (0.132153)
	cty (0.10408)