Non-Coding RNA Search

Ss1.1-Tra1-TCH01F080099.5

Sequence:


               
               TTTCAAGGGCTTTGTTCTTTATTTTTGCCTCGCTCTTCTGTGTGCATTAGCCCTTATACC
TCCAGACTCTAATCCCATTGGCTTTTTTTGTCTTCATCTCCTACATTTTATAATTTCCTG
AATCTATTCATGTGCCTTCTGGAACTCATAGTCCTTAGCAAATCCTTTTTATTGTCAGTC
TGTCCGGGAATATTTCCTTCTCTTTCTTGCTCCAGCTGAATCCTAGCCTCTCCCCTGATA
GTGCTGCTGACCTGGGAGCTCTCTCAAGTGGTAAATGTTTCCTTTTGCACATCTTTTATT
GCTGAACCAAGAGGTAGAGTGTCTTCCTTATATCTCATTGTCATTTCTTGACCATTCTTT
TCCAAAACTTTGACACTCATTCTGTCAAATTATACACCCAGGACCCCTCTTTATTTCAGT
CATCTGCCAACTTTCCTGGGTCATTCCCCTCTTTCCTTGAATGCTGTTAGTTCTGACTCA
CTGTCGTCTTTATTTCTGTTGTAATTCTTGGTTCTTAGTGATATCAGTGCCATTAGAGCA
GTGATACTCTGAAATGTCACCTGATCTGTGAACCAGTATGAATTGCAGTAAGGAGTTTGT
GCCCAAATGTATATCACTTATGTCATTAAGTTCACTGTTGAATTCAGCTGACTTTTTTTA
TAGCAAAACTTTTGATGAAGGAATCAATGTGTTGATTGATATAATCTGGCACAAGCTCCT
TAGGGTGTCTTGGTCTGTTCCTTTGAGTAATACTGATGTAGAGGATGCTTCCCATATTCT
GACCTCTTAGTTCCTTGATTTCTTCTCCAAGTGAGCTTATTTTTCAGTGTGATTCAGCCA
CCCTGTATTTGAGTTTCAGCAGCTCTTCAGCCCCACTGAAACTTGCACATTGTTTATCCA
TATAAGCTTTTCAGTGTCCCTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAAGGGCTTTGTTCTTTATTTTTGCCTCGCTCTTCTGTGTGCATTAGCCCTTATACC
TCCAGACTCTAATCCCATTGGCTTTTTTTGTCTTCATCTCCTACATTTTATAATTTCCTG
AATCTATTCATGTGCCTTCTGGAACTCATAGTCCTTAGCAAATCCTTTTTATTGTCAGTC
TGTCCGGGAATATTTCCTTCTCTTTCTTGCTCCAGCTGAATCCTAGCCTCTCCCCTGATA
GTGCTGCTGACCTGGGAGCTCTCTCAAGTGGTAAATGTTTCCTTTTGCACATCTTTTATT
GCTGAACCAAGAGGTAGAGTGTCTTCCTTATATCTCATTGTCATTTCTTGACCATTCTTT
TCCAAAACTTTGACACTCATTCTGTCAAATTATACACCCAGGACCCCTCTTTATTTCAGT
CATCTGCCAACTTTCCTGGGTCATTCCCCTCTTTCCTTGAATGCTGTTAGTTCTGACTCA
CTGTCGTCTTTATTTCTGTTGTAATTCTTGGTTCTTAGTGATATCAGTGCCATTAGAGCA
GTGATACTCTGAAATGTCACCTGATCTGTGAACCAGTATGAATTGCAGTAAGGAGTTTGT
GCCCAAATGTATATCACTTATGTCATTAAGTTCACTGTTGAATTCAGCTGACTTTTTTTA
TAGCAAAACTTTTGATGAAGGAATCAATGTGTTGATTGATATAATCTGGCACAAGCTCCT
TAGGGTGTCTTGGTCTGTTCCTTTGAGTAATACTGATGTAGAGGATGCTTCCCATATTCT
GACCTCTTAGTTCCTTGATTTCTTCTCCAAGTGAGCTTATTTTTCAGTGTGATTCAGCCA
CCCTGTATTTGAGTTTCAGCAGCTCTTCAGCCCCACTGAAACTTGCACATTGTTTATCCA
TATAAGCTTTTCAGTGTCCCTCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               197-313, - strand, RNAz p=0.50913

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-313, - strand, RNAz p=0.50913

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-844, gnl|bosTau2|chr22 (13076275-13077128)
               

               
               1-844, gnl|Hg17|chr3 (41224091-41224896)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-844, gnl|bosTau2|chr22 (13076275-13077128)
               

               
               1-844, gnl|Hg17|chr3 (41224091-41224896)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	1-844, gnl\|bosTau2\|chr22 (13076275-13077128)
	1-844, gnl\|Hg17\|chr3 (41224091-41224896)