Ss1.1-Tra1-TCH01F090037.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGGCTACTACGATGGCGATGAGTTTCGAGTGGCCGTGGCAGTATCGCTTCCCGCCCTT CTTTACGTTGCAACCGAACGTGGACACTCGGCAGAAGCAGCTGGCCGCCTGGTGCTCTCT GGTCCTGTCCTTCTGCCGCCTGCACAAACAGTCCAGCATGACGGTGATGGAAGCTCAGGA GAGCCCGCTTTTCAACAACGTGAAGCTACAGCGGAAGCTCCCTGTGGAATCAATCCAAGT TGTATTAGAGGAACTGAGGAAGAAAGGGAACTTGGAGTGGTTGGATAAGAACAAGTCTAG CTTCCTGATCATGTGGCGGAGGCCAGAAGAATGGGGGAAACTCATCTATCAATGGGTTTC CAGGAGTGGCCAGAACAACTCCGTATTCACTCTGTATGAACTGACCAATGGGGAAGACAC AGAGGATGAGGAGTTCCATGGGCTGGATGAGGCAACTCTACTGCGGGCTCTGCAGGCCCT ACAGCAGGAGCACAAGGCTGAGATCATCACCGTCAGCGATGGCCGAGGCGTCAAGTTCTT CTAGCAGAGACCTGTCTCCCTTTACTTCTTACCTCCCACCCTTCCAGGGCTTTCAAAAGG AGACAGACCAAGTGTCCCCACAGACTGGATCTGTGACTCCACCAGATTCAAAAGGGCTCC AGTCCAGGGATGGGTTTCTTACCTTCACCATGTGTCTGTCCCTGGAATAGGGTGAGGCTG GGGTGCCAGGGAGAAAAGATGTGCATCTTCTTGCCCCACCTCCTCTTCTGAACTGGGGTC TGTAAACCTGACACTTCACATGTGTTCACATAAGTTCATACACACATGCGCCTGCACAAG CTTCTGTCTCTTCCCTCTCCTACCCTCTCAGCTGCTGCCACCTCCCCTCTCAGGCTGGTG CTGGATCCTTCTTAGGGGATGGGCAAAGCCCTGGCTGCAGGCAGCCTTCCAGGCAATATG AAGATAGGAGGCCCAGGAAGGGGCCTGGCAGTGAGAGGCGGGCCGGACACAGATTTATAA CATTAAAAAGCTCAACCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGGCTACTACGATGGCGATGAGTTTCGAGTGGCCGTGGCAGTATCGCTTCCCGCCCTT CTTTACGTTGCAACCGAACGTGGACACTCGGCAGAAGCAGCTGGCCGCCTGGTGCTCTCT GGTCCTGTCCTTCTGCCGCCTGCACAAACAGTCCAGCATGACGGTGATGGAAGCTCAGGA GAGCCCGCTTTTCAACAACGTGAAGCTACAGCGGAAGCTCCCTGTGGAATCAATCCAAGT TGTATTAGAGGAACTGAGGAAGAAAGGGAACTTGGAGTGGTTGGATAAGAACAAGTCTAG CTTCCTGATCATGTGGCGGAGGCCAGAAGAATGGGGGAAACTCATCTATCAATGGGTTTC CAGGAGTGGCCAGAACAACTCCGTATTCACTCTGTATGAACTGACCAATGGGGAAGACAC AGAGGATGAGGAGTTCCATGGGCTGGATGAGGCAACTCTACTGCGGGCTCTGCAGGCCCT ACAGCAGGAGCACAAGGCTGAGATCATCACCGTCAGCGATGGCCGAGGCGTCAAGTTCTT CTAGCAGAGACCTGTCTCCCTTTACTTCTTACCTCCCACCCTTCCAGGGCTTTCAAAAGG AGACAGACCAAGTGTCCCCACAGACTGGATCTGTGACTCCACCAGATTCAAAAGGGCTCC AGTCCAGGGATGGGTTTCTTACCTTCACCATGTGTCTGTCCCTGGAATAGGGTGAGGCTG GGGTGCCAGGGAGAAAAGATGTGCATCTTCTTGCCCCACCTCCTCTTCTGAACTGGGGTC TGTAAACCTGACACTTCACATGTGTTCACATAAGTTCATACACACATGCGCCTGCACAAG CTTCTGTCTCTTCCCTCTCCTACCCTCTCAGCTGCTGCCACCTCCCCTCTCAGGCTGGTG CTGGATCCTTCTTAGGGGATGGGCAAAGCCCTGGCTGCAGGCAGCCTTCCAGGCAATATG AAGATAGGAGGCCCAGGAAGGGGCCTGGCAGTGAGAGGCGGGCCGGACACAGATTTATAA CATTAAAAAGCTCAACCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 550-829, - strand, RNAz p=0.976368 | |
| 895-1040, + strand, RNAz p=0.947187 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 550-829, - strand, RNAz p=0.976368 | |
| 895-1040, + strand, RNAz p=0.947187 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_032353, + |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 67-223, gnl|bosTau2|chr19 (38961701-38961545) | |
| 67-223, gnl|canFam2|chr9 (23564870-23564728) | |
| 67-223, gnl|canFam2|chr9 (23564903-23564714) | |
| 67-223, gnl|dasNov1|scaffold_7434 (10801-10656) | |
| 67-223, gnl|dasNov1|scaffold_7434 (10831-10642) | |
| 67-223, gnl|echTel1|scaffold_267235 (6168-5981) | |
| 67-223, gnl|echTel1|scaffold_318986 (4389-4244) | |
| 67-223, gnl|fr1|chrUn (50034589-50034435) | |
| 67-223, gnl|hg17|chr1 (117804128-117804273) | |
| 67-223, gnl|hg17|chr17 (38179245-38179434) | |
| 67-223, gnl|Hg17|chr17 (38179277-38179433) | |
| 67-223, gnl|loxAfr1|scaffold_56777 (4020-4164) | |
| 67-223, gnl|loxAfr1|scaffold_56777 (3993-4179) | |
| 67-223, gnl|mm7|chr11 (101363068-101363213) | |
| 67-223, gnl|mm7|chr11 (101363038-101363227) | |
| 67-223, gnl|Mm7|chr11 (101363070-101363226) | |
| 67-223, gnl|monDom2|scaffold_18 (53324187-53324332) | |
| 67-223, gnl|monDom2|scaffold_18 (53324172-53324345) | |
| 67-223, gnl|oryCun1|scaffold_197065 (11080-11223) | |
| 67-223, gnl|oryCun1|scaffold_197065 (11054-11239) | |
| 67-223, gnl|panTro1|chr1 (117647706-117647851) | |
| 67-223, gnl|panTro1|chr19 (41365448-41365637) | |
| 67-223, gnl|rheMac2|chr1 (120524796-120524941) | |
| 67-223, gnl|rheMac2|chr16 (52895800-52895989) | |
| 67-223, gnl|rn3|chr10 (90297345-90297490) | |
| 67-223, gnl|rn3|chr10 (90297315-90297504) | |
| 67-223, gnl|tetNig1|chr2 (865933-865776) | |
| 67-223, gnl|tetNig1|chr2 (865963-865774) | |
| 67-223, gnl|xenTro1|scaffold_92 (620669-620509) | |
| 431-1040, gnl|bosTau2|chr19 (38957878-38957254) | |
| 431-1040, gnl|Hg17|chr17 (38184500-38185143) | |
| 431-1040, gnl|Mm7|chr11 (101367948-101368585) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-223, gnl|bosTau2|chr19 (38961701-38961545) | |
| 67-223, gnl|canFam2|chr9 (23564870-23564728) | |
| 67-223, gnl|canFam2|chr9 (23564903-23564714) | |
| 67-223, gnl|dasNov1|scaffold_7434 (10801-10656) | |
| 67-223, gnl|dasNov1|scaffold_7434 (10831-10642) | |
| 67-223, gnl|echTel1|scaffold_267235 (6168-5981) | |
| 67-223, gnl|echTel1|scaffold_318986 (4389-4244) | |
| 67-223, gnl|fr1|chrUn (50034589-50034435) | |
| 67-223, gnl|hg17|chr1 (117804128-117804273) | |
| 67-223, gnl|hg17|chr17 (38179245-38179434) | |
| 67-223, gnl|Hg17|chr17 (38179277-38179433) | |
| 67-223, gnl|loxAfr1|scaffold_56777 (4020-4164) | |
| 67-223, gnl|loxAfr1|scaffold_56777 (3993-4179) | |
| 67-223, gnl|mm7|chr11 (101363068-101363213) | |
| 67-223, gnl|mm7|chr11 (101363038-101363227) | |
| 67-223, gnl|Mm7|chr11 (101363070-101363226) | |
| 67-223, gnl|monDom2|scaffold_18 (53324187-53324332) | |
| 67-223, gnl|monDom2|scaffold_18 (53324172-53324345) | |
| 67-223, gnl|oryCun1|scaffold_197065 (11080-11223) | |
| 67-223, gnl|oryCun1|scaffold_197065 (11054-11239) | |
| 67-223, gnl|panTro1|chr1 (117647706-117647851) | |
| 67-223, gnl|panTro1|chr19 (41365448-41365637) | |
| 67-223, gnl|rheMac2|chr1 (120524796-120524941) | |
| 67-223, gnl|rheMac2|chr16 (52895800-52895989) | |
| 67-223, gnl|rn3|chr10 (90297345-90297490) | |
| 67-223, gnl|rn3|chr10 (90297315-90297504) | |
| 67-223, gnl|tetNig1|chr2 (865933-865776) | |
| 67-223, gnl|tetNig1|chr2 (865963-865774) | |
| 67-223, gnl|xenTro1|scaffold_92 (620669-620509) | |
| 431-1040, gnl|bosTau2|chr19 (38957878-38957254) | |
| 431-1040, gnl|Hg17|chr17 (38184500-38185143) | |
| 431-1040, gnl|Mm7|chr11 (101367948-101368585) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| pro (0.512033) | |
| ton (0.351) | |
| cag (0.302389) | |
| eje (0.296501) | |
| fce (0.271592) | |
| cov (0.264306) | |
| med (0.232504) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| pla (0.133672) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| ton (0.351) | |
| cag (0.302389) | |
| eje (0.296501) | |
| fce (0.271592) | |
| cov (0.264306) | |
| med (0.232504) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| pla (0.133672) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |