Non-Coding RNA Search

Ss1.1-Tra1-TCH01F090038.5.5

Sequence:


               
               AAAATGTCAGGTGTAACAAGGAGCTCTAACAGGATGTGTGCTGGGGGATGAGAAGTGAGA
CTGTCCGGGGAGCAGTCGGTGCCGAGAGGGCTCTGCAGGAAGAAGAAGCGGGAACCAGCA
CCGCGGGCGCGGGCGCGGGCTGGGCAGCGCCGCCAGGCGGGGGACCTGGGTCCGCCGGCG
AGCAGGGCTGACTTCTTTGCCTTCGTGAGACCCCGACGGGACACCTGTCCCCCCAGAATG
AAGGTCCTCCTGCCGGTGCTGCTGGCTGCCCTCCTGGGTGTGGAGCGAGCCCACTCCCTG
GTGTGCTTCTCTTGCACGAATAAGAACAGCAATTTTTACTGCCTGAAGCCCACCATCTGC
TCCGATTCGGACAACTACTGCGTGACCGTCTCTGCATCTGCTGGCATTGGGAACGTGGTG
GACTTTGGCTACACCCTGAACAAGGGCTGCTCCCCGATCTGTCCTGGCCCCAGCGTCAAC
CTCGGTGTGGCGTCCGTAGGCACCCACTGCTGCCAGAGCTTTCTGTGCAACATCAGCGCG
GCCGACGGCGGGCTGCGGGCCAGCGCCGCCGTGCTGGGCCTCGGGCTCCTGCTCAGCCTG
CTGTCGGCTCTGCTGCGGTTTGGCCCCTGACCCCTTCTCTGTGCCTGGCCCCGACTCCCA
AAGCTCAGGAAGAAAGGAACGCCCAGCCCCTCGAGACCCCAGAGGATCCTGACGCCGACT
CCTCACCCTGCTGCTCCCACCCCCTCAGCCCTGGGACCCACGGGCAGCCCGCCCCCTGCA
CCTGCACCTGCCAGCCCCCCGACTTGGTGTGTGTGTCAGCCTCCCTTGGGGGGACCTGGG
AACGGAGACTGAGGGTCCTGGAGTCAGAACTGAGTCCCTGCTCCTGTGTGCCCCCAGGTA
TGGAAGATGGGCTGTGTGGACAGGCGTGCGGCCCGTGTGCCCTGCCAGGCGTGTGTGAGG
GAAGGTGTGGACATAAGTGTCAGGAGCCCAGCGTCAGCAGTCCCCGGGGCCCCAGGTGCC
CGCACAGCCCTGTCCCCCAGTCTCTGCGCAGCTCATTTGGCTCAGAGCTCAGCCCTCTGG
GAGGCCCAGGCTCCACCGTCCCAGGTCTAGGCTGCTGACCCAGGAATTCGCGCCCACCCC
TGACCCGCTGCAGCCCCTGCCCCACCCCCCTGGGTCCTCCTGCTGCTTTGGTGCCTCAAA
TAAACATGGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATGTCAGGTGTAACAAGGAGCTCTAACAGGATGTGTGCTGGGGGATGAGAAGTGAGA
CTGTCCGGGGAGCAGTCGGTGCCGAGAGGGCTCTGCAGGAAGAAGAAGCGGGAACCAGCA
CCGCGGGCGCGGGCGCGGGCTGGGCAGCGCCGCCAGGCGGGGGACCTGGGTCCGCCGGCG
AGCAGGGCTGACTTCTTTGCCTTCGTGAGACCCCGACGGGACACCTGTCCCCCCAGAATG
AAGGTCCTCCTGCCGGTGCTGCTGGCTGCCCTCCTGGGTGTGGAGCGAGCCCACTCCCTG
GTGTGCTTCTCTTGCACGAATAAGAACAGCAATTTTTACTGCCTGAAGCCCACCATCTGC
TCCGATTCGGACAACTACTGCGTGACCGTCTCTGCATCTGCTGGCATTGGGAACGTGGTG
GACTTTGGCTACACCCTGAACAAGGGCTGCTCCCCGATCTGTCCTGGCCCCAGCGTCAAC
CTCGGTGTGGCGTCCGTAGGCACCCACTGCTGCCAGAGCTTTCTGTGCAACATCAGCGCG
GCCGACGGCGGGCTGCGGGCCAGCGCCGCCGTGCTGGGCCTCGGGCTCCTGCTCAGCCTG
CTGTCGGCTCTGCTGCGGTTTGGCCCCTGACCCCTTCTCTGTGCCTGGCCCCGACTCCCA
AAGCTCAGGAAGAAAGGAACGCCCAGCCCCTCGAGACCCCAGAGGATCCTGACGCCGACT
CCTCACCCTGCTGCTCCCACCCCCTCAGCCCTGGGACCCACGGGCAGCCCGCCCCCTGCA
CCTGCACCTGCCAGCCCCCCGACTTGGTGTGTGTGTCAGCCTCCCTTGGGGGGACCTGGG
AACGGAGACTGAGGGTCCTGGAGTCAGAACTGAGTCCCTGCTCCTGTGTGCCCCCAGGTA
TGGAAGATGGGCTGTGTGGACAGGCGTGCGGCCCGTGTGCCCTGCCAGGCGTGTGTGAGG
GAAGGTGTGGACATAAGTGTCAGGAGCCCAGCGTCAGCAGTCCCCGGGGCCCCAGGTGCC
CGCACAGCCCTGTCCCCCAGTCTCTGCGCAGCTCATTTGGCTCAGAGCTCAGCCCTCTGG
GAGGCCCAGGCTCCACCGTCCCAGGTCTAGGCTGCTGACCCAGGAATTCGCGCCCACCCC
TGACCCGCTGCAGCCCCTGCCCCACCCCCCTGGGTCCTCCTGCTGCTTTGGTGCCTCAAA
TAAACATGGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               LY6E_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               LY6E_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               498-617, + strand, RNAz p=0.926805

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               498-617, + strand, RNAz p=0.926805

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               180-289, gnl|bosTau2|chr14 (2320790-2320896)
               

               
               180-289, gnl|canFam2|chr13 (39955492-39955655)
               

               
               180-289, gnl|hg17|chr8 (144173618-144173792)
               

               
               180-289, gnl|Hg17|chr8 (144173674-144173783)
               

               
               180-289, gnl|loxAfr1|scaffold_104833 (1372-1524)
               

               
               180-289, gnl|mm7|chr15 (75038271-75038436)
               

               
               180-289, gnl|panTro1|chr7 (147436342-147436516)
               

               
               180-289, gnl|rheMac2|chr8 (145657965-145658139)
               

               
               180-289, gnl|rn3|chr7 (113188167-113188305)
               


               
               385-878, gnl|bosTau2|chr14 (2321352-2321832)
               

               
               385-878, gnl|Hg17|chr8 (144174337-144174866)
               

               
               385-878, gnl|Mm7|chr15 (75039024-75039549)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               180-289, gnl|bosTau2|chr14 (2320790-2320896)
               

               
               180-289, gnl|canFam2|chr13 (39955492-39955655)
               

               
               180-289, gnl|hg17|chr8 (144173618-144173792)
               

               
               180-289, gnl|Hg17|chr8 (144173674-144173783)
               

               
               180-289, gnl|loxAfr1|scaffold_104833 (1372-1524)
               

               
               180-289, gnl|mm7|chr15 (75038271-75038436)
               

               
               180-289, gnl|panTro1|chr7 (147436342-147436516)
               

               
               180-289, gnl|rheMac2|chr8 (145657965-145658139)
               

               
               180-289, gnl|rn3|chr7 (113188167-113188305)
               


               
               385-878, gnl|bosTau2|chr14 (2321352-2321832)
               

               
               385-878, gnl|Hg17|chr8 (144174337-144174866)
               

               
               385-878, gnl|Mm7|chr15 (75039024-75039549)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cag (1.20956)
               

               
               fty (0.879198)
               

               
               csp (0.644745)
               

               
               med (0.58126)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (1.20956)
               

               
               fty (0.879198)
               

               
               csp (0.644745)
               

               
               med (0.58126)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)

	180-289, gnl\|bosTau2\|chr14 (2320790-2320896)
	180-289, gnl\|canFam2\|chr13 (39955492-39955655)
	180-289, gnl\|hg17\|chr8 (144173618-144173792)
	180-289, gnl\|Hg17\|chr8 (144173674-144173783)
	180-289, gnl\|loxAfr1\|scaffold_104833 (1372-1524)
	180-289, gnl\|mm7\|chr15 (75038271-75038436)
	180-289, gnl\|panTro1\|chr7 (147436342-147436516)
	180-289, gnl\|rheMac2\|chr8 (145657965-145658139)
	180-289, gnl\|rn3\|chr7 (113188167-113188305)

	385-878, gnl\|bosTau2\|chr14 (2321352-2321832)
	385-878, gnl\|Hg17\|chr8 (144174337-144174866)
	385-878, gnl\|Mm7\|chr15 (75039024-75039549)

	cag (1.20956)
	fty (0.879198)
	csp (0.644745)
	med (0.58126)
	lnt (0.284616)
	fce (0.271592)
	cly (0.241284)
	col (0.195008)
	fhi (0.169578)
	hyp (0.142837)
	nmm (0.132802)
	cov (0.132153)