Ss1.1-Tra1-TCH01F090076.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTCTTCAGCCGCAGCATCGAGTCGGCCGTCTTCAGCCGCAGCATCGAGTCGGCCTTGTT GGCCTACTGGAAGCCAGGAAGAGGAGACCAGGACAGCCACCAAAACCTCTGGGAAGTCAG ACATCAAGAGAGATGTCTCAAGTTGCAGGCCTCATTGTCTTCTGTGGGCTGCTGGCCCAG ACCACAGCGCTGCTGGAAGCCCTGCCCCTGGGCAAGGCTCTGCCCTTGGCCCTGGACCAA AGTCCCACAGATCTTGTTGGAAGCTTGACAAGTACTCTCAGCAATGGCCTGCTCTCTGAG GGTGTGCTGGGCATTCTTGGAAACCTTCCACTCTTGGACATCCTGAAGGCTGGAGGGAAC ACTCCCAGTGGCCTGCTGGGAGGCCTGCTTGGGAAACTGTCCTCAACGATCCCTCTCCTG AACGACATCGTTGATCTGCAGATCACTGATCCCCAGCTGCTGGAACTCGGCCTTGTGCAG AGCCCCGATGGCCATCGTCTCTATGTCACCATCCCTCTGAGTCTGGTCCTCAATGTGAAA ACGTCTGTGGTCGGAAGTCTGCTAAAGCTGGCCGTGAAGCTCAACATCACTGTAGAACTC TTAGCTGTGAAAGACGAACAGGGGAAGAGCCACCTGGTCCTTGGTGACTGCACTCACTCC CCTGGCAGCCTGAAAATCTCCCTGCTTGATGGATTGGGCCCCCTCGTCCCTCAAGACCTT CTTGACAGCATCACTGGAGTCTTGGATAATGTCCTTCCTGGGCTGGTGCAGGGCGAGGTG TGCCCTCTGGTCAATGAGGTTCTCAGCCACTTGGACGTCACCTTGGTACATTCCATCGTC GACGCGCTAATCCAAGGGCAGGAATTTGTCATCAAAGTCTAAGCCCTCCAGCAAGGGACC TCCCCTCTCCTGAGCTGGACCATTTCCTGCTGCCCCATCCACTCCCTGCCCAGCACCCGA GGGCTCACAGAAGGCCAGCCCATGTCCCGGACAAGGACACCAGGTCTGGAGACCAGAGCA GCCCGCCCTCCAAGGAACCGCTCCCCCTGCTTCCCCACCAGGCATGTGTGACATTCCCTG TTACTTGCGCAATAAAATCGCCCTTTCTCGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTCTTCAGCCGCAGCATCGAGTCGGCCGTCTTCAGCCGCAGCATCGAGTCGGCCTTGTT GGCCTACTGGAAGCCAGGAAGAGGAGACCAGGACAGCCACCAAAACCTCTGGGAAGTCAG ACATCAAGAGAGATGTCTCAAGTTGCAGGCCTCATTGTCTTCTGTGGGCTGCTGGCCCAG ACCACAGCGCTGCTGGAAGCCCTGCCCCTGGGCAAGGCTCTGCCCTTGGCCCTGGACCAA AGTCCCACAGATCTTGTTGGAAGCTTGACAAGTACTCTCAGCAATGGCCTGCTCTCTGAG GGTGTGCTGGGCATTCTTGGAAACCTTCCACTCTTGGACATCCTGAAGGCTGGAGGGAAC ACTCCCAGTGGCCTGCTGGGAGGCCTGCTTGGGAAACTGTCCTCAACGATCCCTCTCCTG AACGACATCGTTGATCTGCAGATCACTGATCCCCAGCTGCTGGAACTCGGCCTTGTGCAG AGCCCCGATGGCCATCGTCTCTATGTCACCATCCCTCTGAGTCTGGTCCTCAATGTGAAA ACGTCTGTGGTCGGAAGTCTGCTAAAGCTGGCCGTGAAGCTCAACATCACTGTAGAACTC TTAGCTGTGAAAGACGAACAGGGGAAGAGCCACCTGGTCCTTGGTGACTGCACTCACTCC CCTGGCAGCCTGAAAATCTCCCTGCTTGATGGATTGGGCCCCCTCGTCCCTCAAGACCTT CTTGACAGCATCACTGGAGTCTTGGATAATGTCCTTCCTGGGCTGGTGCAGGGCGAGGTG TGCCCTCTGGTCAATGAGGTTCTCAGCCACTTGGACGTCACCTTGGTACATTCCATCGTC GACGCGCTAATCCAAGGGCAGGAATTTGTCATCAAAGTCTAAGCCCTCCAGCAAGGGACC TCCCCTCTCCTGAGCTGGACCATTTCCTGCTGCCCCATCCACTCCCTGCCCAGCACCCGA GGGCTCACAGAAGGCCAGCCCATGTCCCGGACAAGGACACCAGGTCTGGAGACCAGAGCA GCCCGCCCTCCAAGGAACCGCTCCCCCTGCTTCCCCACCAGGCATGTGTGACATTCCCTG TTACTTGCGCAATAAAATCGCCCTTTCTCGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 275-434, gnl|bosTau2|chr13 (43729133-43728974) | |
| 275-434, gnl|canFam2|chr24 (25448990-25449355) | |
| 275-434, gnl|dasNov1|scaffold_5805 (4327-3990) | |
| 275-434, gnl|echTel1|scaffold_324870 (43878-43519) | |
| 275-434, gnl|hg17|chr20 (31289452-31289829) | |
| 275-434, gnl|Hg17|chr20 (31289522-31289681) | |
| 275-434, gnl|loxAfr1|scaffold_137524 (12-347) | |
| 275-434, gnl|mm7|chr2 (153884982-153885322) | |
| 275-434, gnl|Mm7|chr2 (153885050-153885209) | |
| 275-434, gnl|oryCun1|scaffold_137182 (9053-8721) | |
| 275-434, gnl|panTro1|chr21 (33266847-33267203) | |
| 275-434, gnl|rheMac2|chr10 (31341033-31340673) | |
| 275-434, gnl|rn3|chr3 (144436635-144436959) | |
| 543-700, gnl|bosTau2|chr13 (43727092-43726935) | |
| 543-700, gnl|canFam2|chr24 (25450926-25451289) | |
| 543-700, gnl|dasNov1|scaffold_5805 (2598-2258) | |
| 543-700, gnl|echTel1|scaffold_305350 (37463-37752) | |
| 543-700, gnl|hg17|chr20 (31291689-31292058) | |
| 543-700, gnl|Hg17|chr20 (31291700-31291860) | |
| 543-700, gnl|loxAfr1|scaffold_8448 (7802-8142) | |
| 543-700, gnl|mm7|chr2 (153886882-153887261) | |
| 543-700, gnl|Mm7|chr2 (153886900-153887057) | |
| 543-700, gnl|oryCun1|scaffold_137182 (7176-6810) | |
| 543-700, gnl|panTro1|chr21 (33269062-33269435) | |
| 543-700, gnl|rheMac2|chr10 (31338816-31338439) | |
| 543-700, gnl|rn3|chr3 (144437895-144438199) | |
| 906-1116, gnl|bosTau2|chr13 (43724184-43723980) | |
| 906-1116, gnl|canFam2|chr24 (25453473-25454099) | |
| 906-1116, gnl|dasNov1|scaffold_50403 (608-4) | |
| 906-1116, gnl|hg17|chr20 (31294330-31295002) | |
| 906-1116, gnl|Hg17|chr20 (31294579-31294776) | |
| 906-1116, gnl|loxAfr1|scaffold_137524 (4507-5154) | |
| 906-1116, gnl|mm7|chr2 (153889645-153890263) | |
| 906-1116, gnl|Mm7|chr2 (153889892-153890079) | |
| 906-1116, gnl|oryCun1|scaffold_137182 (4616-4009) | |
| 906-1116, gnl|panTro1|chr21 (33272239-33272913) | |
| 906-1116, gnl|rheMac2|chr10 (31335650-31335023) | |
| 906-1116, gnl|rn3|chr3 (144440800-144441405) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 275-434, gnl|bosTau2|chr13 (43729133-43728974) | |
| 275-434, gnl|canFam2|chr24 (25448990-25449355) | |
| 275-434, gnl|dasNov1|scaffold_5805 (4327-3990) | |
| 275-434, gnl|echTel1|scaffold_324870 (43878-43519) | |
| 275-434, gnl|hg17|chr20 (31289452-31289829) | |
| 275-434, gnl|Hg17|chr20 (31289522-31289681) | |
| 275-434, gnl|loxAfr1|scaffold_137524 (12-347) | |
| 275-434, gnl|mm7|chr2 (153884982-153885322) | |
| 275-434, gnl|Mm7|chr2 (153885050-153885209) | |
| 275-434, gnl|oryCun1|scaffold_137182 (9053-8721) | |
| 275-434, gnl|panTro1|chr21 (33266847-33267203) | |
| 275-434, gnl|rheMac2|chr10 (31341033-31340673) | |
| 275-434, gnl|rn3|chr3 (144436635-144436959) | |
| 543-700, gnl|bosTau2|chr13 (43727092-43726935) | |
| 543-700, gnl|canFam2|chr24 (25450926-25451289) | |
| 543-700, gnl|dasNov1|scaffold_5805 (2598-2258) | |
| 543-700, gnl|echTel1|scaffold_305350 (37463-37752) | |
| 543-700, gnl|hg17|chr20 (31291689-31292058) | |
| 543-700, gnl|Hg17|chr20 (31291700-31291860) | |
| 543-700, gnl|loxAfr1|scaffold_8448 (7802-8142) | |
| 543-700, gnl|mm7|chr2 (153886882-153887261) | |
| 543-700, gnl|Mm7|chr2 (153886900-153887057) | |
| 543-700, gnl|oryCun1|scaffold_137182 (7176-6810) | |
| 543-700, gnl|panTro1|chr21 (33269062-33269435) | |
| 543-700, gnl|rheMac2|chr10 (31338816-31338439) | |
| 543-700, gnl|rn3|chr3 (144437895-144438199) | |
| 906-1116, gnl|bosTau2|chr13 (43724184-43723980) | |
| 906-1116, gnl|canFam2|chr24 (25453473-25454099) | |
| 906-1116, gnl|dasNov1|scaffold_50403 (608-4) | |
| 906-1116, gnl|hg17|chr20 (31294330-31295002) | |
| 906-1116, gnl|Hg17|chr20 (31294579-31294776) | |
| 906-1116, gnl|loxAfr1|scaffold_137524 (4507-5154) | |
| 906-1116, gnl|mm7|chr2 (153889645-153890263) | |
| 906-1116, gnl|Mm7|chr2 (153889892-153890079) | |
| 906-1116, gnl|oryCun1|scaffold_137182 (4616-4009) | |
| 906-1116, gnl|panTro1|chr21 (33272239-33272913) | |
| 906-1116, gnl|rheMac2|chr10 (31335650-31335023) | |
| 906-1116, gnl|rn3|chr3 (144440800-144441405) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| pty (64.7924) | |
| nmm (4.38247) | |
| lyg (2.66205) | |
| fli (1.82593) | |
| tra (1.4771) | |
| nlu (0.383362) | |
| med (0.348756) | |
| clu (0.119646) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (64.7924) | |
| nmm (4.38247) | |
| lyg (2.66205) | |
| fli (1.82593) | |
| tra (1.4771) | |
| nlu (0.383362) | |
| med (0.348756) | |
| clu (0.119646) |