Ss1.1-Tra1-TCH01F100001.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGACAAAGCCAAGAAGAAGCACGATAGGAAATCCAAGCGCCTGGATGAGGAAGAGGA GGACAATGAAGGCGGGGAGTGGGAAAGGGTCCGAGGTGGAGTGCCCCTGGTTAAGGAGAA ACCAAAAATGTTTGCCAAGGGAACCGAGATCACCCATGCTGTTGTCATCAAGAAACTGAA TGAGATCCTACAGGCCAGAGGCAAGAAGGGAACTGATCGCGCAGTGCAGATTGAGATGCT ACAGCTGCTGGTTCAGATTGCTTCTGAAAACAACCTGGGGGAGGGGGTCATCGTCAAGAT CAAGTTCAACATCATCGCCTCTCTCTATGACTACAACCCCAACCTGGCCACGTACATGAA GCCCGAGATGTGGCAGAAGTGCCTGGACTGCATCAATGAGCTGATGGACATCCTGTTTGC AAACCCCAACATCTTTGTTGGAGAGAACATTCTGGAAGAGAGTGAGAACCTGCATAATGC TGACCAGCCGCTGCGTGTCCGTGGCTGTATCCTAACTCTGGTGGAACGAATGGATGAAGA ATTTACCAAAATAATGCAAAATACCGATCCTCATTCCCAAGAGTACGTGGAGCACCTGAA GGACGAGGCGCAGGTGTGCGCCATCATCGAGCGTGTGCAGCGCTACCTGGAGGAGAAGGG CACCACCGAGGAGATCTGCCGCATCTACCTGAGGCGCATTCTCCACACCTACTACAAGTT TGACTACAAAGCCCATCAGCGGCAGCTTACCCCCCCTGAGGGCTCCTCAAAGTCTGAGCA AGACCAGGCCGAAAATGAGGGCGAGGACTCAGCCGTGCTGATGGAGAGACTGTGCAAATA CATCTACGCCAAGGACCGCACGGACCGCATCCGCACGTGCGCCATCCTCTGCCACATCTA CCATCATGCCCTGCACTCCCGCTGGTACCAGGCCCGGGACCTCATGCTCATGAGCCACCT CCAAGACAACATTCAGCACTCGGACCCGCCCGTACAGATCCTGTACAACCGCACCATGGT GCAGCTGGGCATCTGTGCCTTCCGCCAGGGCCTGACCAAGGATGCCCACAACGCCCTGCT GGACATCCAGTCAAGTGGCCGGGCCAAGGAGCTTCTCGGCCAGGGCCTGCTGCTGCGCAG CCTGCAGGAGCGAAACCAGGAGCAGGAGAAGGTGGAGCGGCGCCGGCAGGTGCCCTTCCA CCTGCACATAAACCTGGAGCTGCTGGAGTGCGTGTACCTGGTGTCGGCCATGCTGCTGGA GATCCCCTACATGGCCGCCCACGAGAGCGATGCCCGCAGACGCATGATCAGCAAGCAGTT CCATCACCAGCTGCGGGTGGGCGAGCGACAGCCCTTGCTGGGTCCCCCCGAGTCAATGAG GGAACATGTGGTCGCTGCCTCCAAGGCCATGAAGATGGGTGACTGGAAGACCTGCCATAG TTTTATCATCAACGAGAAGATGAATGGCAAAGTGTGGGACCTTTTCCCGGAGGCCGACAA AGTCCGAACCATGCTGGTCAGGAAGATCCAGGAGGAGTCCCTGCGGACCTACCTCTTCAC CTACAGCAGCGTCTACGACTCCATCAGCATGGAGACGCTGTCCGACATGTTCGAGCTGGA CCTGCCCACCGTGCACTCCATCATCAGCAAGATGATCATCAACGAGGAGCTGATGGCCTC GCTGGACCAGCCGACACAGACGGTGGTGATGCACCGCACGGAGCCCACGGCCCAGCAGAA CCTGGCCCTGCAGCTGGCTGAGAAGCTGGGCAGCCTGGTGGAAAATAACGAGCGGGTGTT TGACCACAAGCAGGGTACCTACGGCGGCTACTTCCGAGACCAGAAGGACGGCTACCGCAA AAACGAGGGCTACATGCGCCGGGGCGGCTACCGCCAGCAGCAGTCTCAGACAGCCTACTG ATCCTCCTGGTCGCTTGACTTCCGTCTCCAGTGCCCTAGACCCTTCTGCCTTTAGGTCCC AAACCACGCCCCAGTCATTAAAGGTCTATTTAGAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGACAAAGCCAAGAAGAAGCACGATAGGAAATCCAAGCGCCTGGATGAGGAAGAGGA GGACAATGAAGGCGGGGAGTGGGAAAGGGTCCGAGGTGGAGTGCCCCTGGTTAAGGAGAA ACCAAAAATGTTTGCCAAGGGAACCGAGATCACCCATGCTGTTGTCATCAAGAAACTGAA TGAGATCCTACAGGCCAGAGGCAAGAAGGGAACTGATCGCGCAGTGCAGATTGAGATGCT ACAGCTGCTGGTTCAGATTGCTTCTGAAAACAACCTGGGGGAGGGGGTCATCGTCAAGAT CAAGTTCAACATCATCGCCTCTCTCTATGACTACAACCCCAACCTGGCCACGTACATGAA GCCCGAGATGTGGCAGAAGTGCCTGGACTGCATCAATGAGCTGATGGACATCCTGTTTGC AAACCCCAACATCTTTGTTGGAGAGAACATTCTGGAAGAGAGTGAGAACCTGCATAATGC TGACCAGCCGCTGCGTGTCCGTGGCTGTATCCTAACTCTGGTGGAACGAATGGATGAAGA ATTTACCAAAATAATGCAAAATACCGATCCTCATTCCCAAGAGTACGTGGAGCACCTGAA GGACGAGGCGCAGGTGTGCGCCATCATCGAGCGTGTGCAGCGCTACCTGGAGGAGAAGGG CACCACCGAGGAGATCTGCCGCATCTACCTGAGGCGCATTCTCCACACCTACTACAAGTT TGACTACAAAGCCCATCAGCGGCAGCTTACCCCCCCTGAGGGCTCCTCAAAGTCTGAGCA AGACCAGGCCGAAAATGAGGGCGAGGACTCAGCCGTGCTGATGGAGAGACTGTGCAAATA CATCTACGCCAAGGACCGCACGGACCGCATCCGCACGTGCGCCATCCTCTGCCACATCTA CCATCATGCCCTGCACTCCCGCTGGTACCAGGCCCGGGACCTCATGCTCATGAGCCACCT CCAAGACAACATTCAGCACTCGGACCCGCCCGTACAGATCCTGTACAACCGCACCATGGT GCAGCTGGGCATCTGTGCCTTCCGCCAGGGCCTGACCAAGGATGCCCACAACGCCCTGCT GGACATCCAGTCAAGTGGCCGGGCCAAGGAGCTTCTCGGCCAGGGCCTGCTGCTGCGCAG CCTGCAGGAGCGAAACCAGGAGCAGGAGAAGGTGGAGCGGCGCCGGCAGGTGCCCTTCCA CCTGCACATAAACCTGGAGCTGCTGGAGTGCGTGTACCTGGTGTCGGCCATGCTGCTGGA GATCCCCTACATGGCCGCCCACGAGAGCGATGCCCGCAGACGCATGATCAGCAAGCAGTT CCATCACCAGCTGCGGGTGGGCGAGCGACAGCCCTTGCTGGGTCCCCCCGAGTCAATGAG GGAACATGTGGTCGCTGCCTCCAAGGCCATGAAGATGGGTGACTGGAAGACCTGCCATAG TTTTATCATCAACGAGAAGATGAATGGCAAAGTGTGGGACCTTTTCCCGGAGGCCGACAA AGTCCGAACCATGCTGGTCAGGAAGATCCAGGAGGAGTCCCTGCGGACCTACCTCTTCAC CTACAGCAGCGTCTACGACTCCATCAGCATGGAGACGCTGTCCGACATGTTCGAGCTGGA CCTGCCCACCGTGCACTCCATCATCAGCAAGATGATCATCAACGAGGAGCTGATGGCCTC GCTGGACCAGCCGACACAGACGGTGGTGATGCACCGCACGGAGCCCACGGCCCAGCAGAA CCTGGCCCTGCAGCTGGCTGAGAAGCTGGGCAGCCTGGTGGAAAATAACGAGCGGGTGTT TGACCACAAGCAGGGTACCTACGGCGGCTACTTCCGAGACCAGAAGGACGGCTACCGCAA AAACGAGGGCTACATGCGCCGGGGCGGCTACCGCCAGCAGCAGTCTCAGACAGCCTACTG ATCCTCCTGGTCGCTTGACTTCCGTCTCCAGTGCCCTAGACCCTTCTGCCTTTAGGTCCC AAACCACGCCCCAGTCATTAAAGGTCTATTTAGAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 580-698, + strand, RNAz p=0.54572 | |
| 1155-1274, + strand, RNAz p=0.854668 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 580-698, + strand, RNAz p=0.54572 | |
| 1155-1274, + strand, RNAz p=0.854668 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC001571, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 114-219, gnl|bosTau2|chr25 (24966831-24966726) | |
| 114-219, gnl|canFam2|chr6 (21300158-21300020) | |
| 114-219, gnl|danRer3|chr12 (962522-962648) | |
| 114-219, gnl|dasNov1|scaffold_241541 (222-77) | |
| 114-219, gnl|echTel1|scaffold_306327 (50494-50637) | |
| 114-219, gnl|fr1|chrUn (113190554-113190666) | |
| 114-219, gnl|hg17|chr16 (28310545-28310689) | |
| 114-219, gnl|Hg17|chr16 (28642268-28642373) | |
| 114-219, gnl|mm7|chr7 (122655164-122655308) | |
| 114-219, gnl|Mm7|chr7 (122655298-122655193) | |
| 114-219, gnl|monDom2|scaffold_5 (119470563-119470697) | |
| 114-219, gnl|oryCun1|scaffold_99379 (484-621) | |
| 114-219, gnl|rheMac2|chr20 (27077609-27077753) | |
| 114-219, gnl|rn3|chr1 (185852548-185852682) | |
| 114-219, gnl|tetNig1|chr15 (6893834-6893945) | |
| 114-219, gnl|xenTro1|scaffold_1720 (11225-11085) | |
| 221-361, gnl|bosTau2|chr25 (24966271-24966131) | |
| 221-361, gnl|Hg17|chr16 (28643145-28643285) | |
| 221-361, gnl|Mm7|chr7 (122654382-122654242) | |
| 580-772, gnl|bosTau2|chr25 (24964663-24964471) | |
| 580-772, gnl|Hg17|chr16 (28645425-28645617) | |
| 580-772, gnl|Mm7|chr7 (122653460-122653268) | |
| 996-1363, gnl|bosTau2|chr25 (24960289-24959922) | |
| 996-1363, gnl|Hg17|chr16 (28650649-28651016) | |
| 996-1363, gnl|Mm7|chr7 (122648898-122648531) | |
| 1675-1838, gnl|bosTau2|chr25 (24958230-24958067) | |
| 1675-1838, gnl|Hg17|chr16 (28653994-28654157) | |
| 1675-1838, gnl|Mm7|chr7 (122643906-122643743) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 114-219, gnl|bosTau2|chr25 (24966831-24966726) | |
| 114-219, gnl|canFam2|chr6 (21300158-21300020) | |
| 114-219, gnl|danRer3|chr12 (962522-962648) | |
| 114-219, gnl|dasNov1|scaffold_241541 (222-77) | |
| 114-219, gnl|echTel1|scaffold_306327 (50494-50637) | |
| 114-219, gnl|fr1|chrUn (113190554-113190666) | |
| 114-219, gnl|hg17|chr16 (28310545-28310689) | |
| 114-219, gnl|Hg17|chr16 (28642268-28642373) | |
| 114-219, gnl|mm7|chr7 (122655164-122655308) | |
| 114-219, gnl|Mm7|chr7 (122655298-122655193) | |
| 114-219, gnl|monDom2|scaffold_5 (119470563-119470697) | |
| 114-219, gnl|oryCun1|scaffold_99379 (484-621) | |
| 114-219, gnl|rheMac2|chr20 (27077609-27077753) | |
| 114-219, gnl|rn3|chr1 (185852548-185852682) | |
| 114-219, gnl|tetNig1|chr15 (6893834-6893945) | |
| 114-219, gnl|xenTro1|scaffold_1720 (11225-11085) | |
| 221-361, gnl|bosTau2|chr25 (24966271-24966131) | |
| 221-361, gnl|Hg17|chr16 (28643145-28643285) | |
| 221-361, gnl|Mm7|chr7 (122654382-122654242) | |
| 580-772, gnl|bosTau2|chr25 (24964663-24964471) | |
| 580-772, gnl|Hg17|chr16 (28645425-28645617) | |
| 580-772, gnl|Mm7|chr7 (122653460-122653268) | |
| 996-1363, gnl|bosTau2|chr25 (24960289-24959922) | |
| 996-1363, gnl|Hg17|chr16 (28650649-28651016) | |
| 996-1363, gnl|Mm7|chr7 (122648898-122648531) | |
| 1675-1838, gnl|bosTau2|chr25 (24958230-24958067) | |
| 1675-1838, gnl|Hg17|chr16 (28653994-28654157) | |
| 1675-1838, gnl|Mm7|chr7 (122643906-122643743) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| cbl (0.45919) | |
| cly (0.361925) | |
| nbm (0.297974) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| eep (0.245128) | |
| nms (0.213858) | |
| mas (0.210305) | |
| cty (0.20816) | |
| col (0.195008) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| ute (0.132784) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.45919) | |
| cly (0.361925) | |
| nbm (0.297974) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| eep (0.245128) | |
| nms (0.213858) | |
| mas (0.210305) | |
| cty (0.20816) | |
| col (0.195008) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| ute (0.132784) | |
| jej (0.0989218) |