Ss1.1-Tra1-TCH01F100095.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTCTGGTTGCTGCAGCGCAGGCCACGGAGGTCTGTGGGTCCGAGCTCGCGCTGCGCTC TTTCGGACCGTTTTGCTATGGCGGCCGCCGCAGCAGTGGTCACACCGTCGGGTTTGGAGG ATGGGGTGTCTCGGTCCCGTGGCGAAGGAGCAGGGGAGGTGGTCGTGGAGCGGGGGCCTG GCGCGGCCTACCACATGTTCGTAGTGATGGAGGACCTAGTGGAGAAGTTGAAGCTGCTCC GTTATGAGGAGGATCTCCTCCGGAAGAACAATCTGAAGCCCCCGTCCAGACACTATTTTG CACTGCCTACCAATCCTGGGGAACAGTTCTACATGTTTTGCACTCTTGCTGCTTGGTTAA TTAACAAAGCGGGACACCCCTTTGAGCAGCCTCAAGAATACGATGACCCTAATGCAACGA TTTCTAACATATTATCTGAGCTTCGATCATTCGGGAGAACTGCAGATTTTCCTCCTTCAA AATTAAAGTCAGGTTATGGAGAGCATGTATGCTATGTTCTTGACTGTTTAGCTGAAGAAG CATTAAAATATATTGGTTTCACCTGGAAAAGACCAACATACCCAGTGGAAGAATTAGAAG AAGAAACTGTTGCGGAAGATGATGCAGAATTAACATTAAATAAAGTGGATGAAGAATTTG TGGAAGAGGAAACAGACAATGAAGAAAACTTTATTGATCTCAATGTTTTGAAGGCTCAGA CCTATCGCTTGGATATGAACGAGTCTGCCAAACAAGAAGATATTTTAGAATCCACAACAG ATGCTGCGGAATGGAGTCTAGAAGTGGAACGTGTGCTACCACAACTGAAAGTCACGATCA GGACTGACAACAAGGATTGGAGAATCCATGTTGACCAAATGCACCAGCACAAAAGTGGAA TTGAATCTGCTCTAAAGGAGACCAAGGGGTTTTTGGACAAACTTCATAATGAGATTAGTA GGACTCTGGAAAAGATTGGCAGCCGAGAGAAGTACATCAACAATCAGCTTGAGCACTTGG TTCAGGAATTTCGAGCAGCTCAAGCCCAGCTGAGTGAGGCAAGGGAGCGATACCAGCAGG GAAACGGCGGAGTAACTGAAAGGACCAAACTCCTATCTGAGGTTACGGAAGAGCTAGAAA AGGTAAAGCAAGAAATGGAAGAAAAAGGGAGCAGTATGACTGATGGTGCTCCTTTGGTGA GGATTAAACAGAGTTTAACGAAGCTGAAGCAAGAAACGGTTCAGATGGACATTAGAATTG GTGTTGTGGAACACACATTACTCCAGTCGAAACTGAAGGAGAAATCCAACATGACTAGGG ACATGCATGCAACCATCATTCCAGAATCTACCATAGGCTCTTATTAAAACGTATTTTTCA TGCTTTCAACTGGTTGTTTGTTTTTTTAATATCAAATTCTATTTCATATTGCATAGATTT CAAAACACAATTATTCCTCTTAAAGCATGTTGAATGGGTATTGAGTACATGTGTACACAC ATATTGTATCATGGTGATTAGGCATGGTCACATCCTTTCAACTGAATATAATATTTAATA AAGTAATTACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTCTGGTTGCTGCAGCGCAGGCCACGGAGGTCTGTGGGTCCGAGCTCGCGCTGCGCTC TTTCGGACCGTTTTGCTATGGCGGCCGCCGCAGCAGTGGTCACACCGTCGGGTTTGGAGG ATGGGGTGTCTCGGTCCCGTGGCGAAGGAGCAGGGGAGGTGGTCGTGGAGCGGGGGCCTG GCGCGGCCTACCACATGTTCGTAGTGATGGAGGACCTAGTGGAGAAGTTGAAGCTGCTCC GTTATGAGGAGGATCTCCTCCGGAAGAACAATCTGAAGCCCCCGTCCAGACACTATTTTG CACTGCCTACCAATCCTGGGGAACAGTTCTACATGTTTTGCACTCTTGCTGCTTGGTTAA TTAACAAAGCGGGACACCCCTTTGAGCAGCCTCAAGAATACGATGACCCTAATGCAACGA TTTCTAACATATTATCTGAGCTTCGATCATTCGGGAGAACTGCAGATTTTCCTCCTTCAA AATTAAAGTCAGGTTATGGAGAGCATGTATGCTATGTTCTTGACTGTTTAGCTGAAGAAG CATTAAAATATATTGGTTTCACCTGGAAAAGACCAACATACCCAGTGGAAGAATTAGAAG AAGAAACTGTTGCGGAAGATGATGCAGAATTAACATTAAATAAAGTGGATGAAGAATTTG TGGAAGAGGAAACAGACAATGAAGAAAACTTTATTGATCTCAATGTTTTGAAGGCTCAGA CCTATCGCTTGGATATGAACGAGTCTGCCAAACAAGAAGATATTTTAGAATCCACAACAG ATGCTGCGGAATGGAGTCTAGAAGTGGAACGTGTGCTACCACAACTGAAAGTCACGATCA GGACTGACAACAAGGATTGGAGAATCCATGTTGACCAAATGCACCAGCACAAAAGTGGAA TTGAATCTGCTCTAAAGGAGACCAAGGGGTTTTTGGACAAACTTCATAATGAGATTAGTA GGACTCTGGAAAAGATTGGCAGCCGAGAGAAGTACATCAACAATCAGCTTGAGCACTTGG TTCAGGAATTTCGAGCAGCTCAAGCCCAGCTGAGTGAGGCAAGGGAGCGATACCAGCAGG GAAACGGCGGAGTAACTGAAAGGACCAAACTCCTATCTGAGGTTACGGAAGAGCTAGAAA AGGTAAAGCAAGAAATGGAAGAAAAAGGGAGCAGTATGACTGATGGTGCTCCTTTGGTGA GGATTAAACAGAGTTTAACGAAGCTGAAGCAAGAAACGGTTCAGATGGACATTAGAATTG GTGTTGTGGAACACACATTACTCCAGTCGAAACTGAAGGAGAAATCCAACATGACTAGGG ACATGCATGCAACCATCATTCCAGAATCTACCATAGGCTCTTATTAAAACGTATTTTTCA TGCTTTCAACTGGTTGTTTGTTTTTTTAATATCAAATTCTATTTCATATTGCATAGATTT CAAAACACAATTATTCCTCTTAAAGCATGTTGAATGGGTATTGAGTACATGTGTACACAC ATATTGTATCATGGTGATTAGGCATGGTCACATCCTTTCAACTGAATATAATATTTAATA AAGTAATTACAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 155-289, + strand, RNAz p=0.926091 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 155-289, + strand, RNAz p=0.926091 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_018010, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 5-289, gnl|bosTau2|chr1 (28790876-28791160) | |
| 5-289, gnl|Hg17|chr3 (109423937-109423648) | |
| 5-289, gnl|Mm7|chr16 (49459712-49459996) | |
| 453-584, gnl|bosTau2|chr1 (28795792-28795924) | |
| 453-584, gnl|Hg17|chr3 (109420190-109420058) | |
| 453-584, gnl|Mm7|chr16 (49463597-49463729) | |
| 690-863, gnl|bosTau2|chr1 (28833015-28833187) | |
| 690-863, gnl|canFam2|chr33 (16501994-16502261) | |
| 690-863, gnl|echTel1|scaffold_319924 (10257-10522) | |
| 690-863, gnl|hg17|chr3 (109393032-109393299) | |
| 690-863, gnl|Hg17|chr3 (109393220-109393048) | |
| 690-863, gnl|mm7|chr16 (49497367-49497101) | |
| 690-863, gnl|Mm7|chr16 (49497177-49497349) | |
| 690-863, gnl|monDom2|scaffold_24 (616192-616435) | |
| 690-863, gnl|panTro1|chr2 (110899134-110899400) | |
| 690-863, gnl|rheMac2|chr2 (28290200-28290467) | |
| 690-863, gnl|rn3|chr11 (52340427-52340694) | |
| 690-863, gnl|xenTro1|scaffold_60 (1572717-1572985) | |
| 925-1062, gnl|bosTau2|chr1 (28858486-28858623) | |
| 925-1062, gnl|canFam2|chr1 (26490422-26490283) | |
| 925-1062, gnl|dasNov1|scaffold_10004 (81860-81721) | |
| 925-1062, gnl|echTel1|scaffold_40430 (5723-5860) | |
| 925-1062, gnl|hg17|chr18 (47468162-47468301) | |
| 925-1062, gnl|Hg17|chr3 (109368524-109368387) | |
| 925-1062, gnl|loxAfr1|scaffold_57232 (6348-6487) | |
| 925-1062, gnl|Mm7|chr16 (49519968-49520105) | |
| 925-1062, gnl|mm7|chr18 (73500098-73499927) | |
| 925-1062, gnl|monDom2|scaffold_24 (574670-574809) | |
| 925-1062, gnl|oryCun1|scaffold_202088 (37821-37683) | |
| 925-1062, gnl|panTro1|chr17 (44072555-44072694) | |
| 925-1062, gnl|rheMac2|chr18 (44806365-44806503) | |
| 925-1062, gnl|rn3|chr18 (69946120-69945946) | |
| 1408-1572, gnl|bosTau2|chr17 (24887294-24887459) | |
| 1408-1572, gnl|Hg17|chr12 (28209906-28210062) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-289, gnl|bosTau2|chr1 (28790876-28791160) | |
| 5-289, gnl|Hg17|chr3 (109423937-109423648) | |
| 5-289, gnl|Mm7|chr16 (49459712-49459996) | |
| 453-584, gnl|bosTau2|chr1 (28795792-28795924) | |
| 453-584, gnl|Hg17|chr3 (109420190-109420058) | |
| 453-584, gnl|Mm7|chr16 (49463597-49463729) | |
| 690-863, gnl|bosTau2|chr1 (28833015-28833187) | |
| 690-863, gnl|canFam2|chr33 (16501994-16502261) | |
| 690-863, gnl|echTel1|scaffold_319924 (10257-10522) | |
| 690-863, gnl|hg17|chr3 (109393032-109393299) | |
| 690-863, gnl|Hg17|chr3 (109393220-109393048) | |
| 690-863, gnl|mm7|chr16 (49497367-49497101) | |
| 690-863, gnl|Mm7|chr16 (49497177-49497349) | |
| 690-863, gnl|monDom2|scaffold_24 (616192-616435) | |
| 690-863, gnl|panTro1|chr2 (110899134-110899400) | |
| 690-863, gnl|rheMac2|chr2 (28290200-28290467) | |
| 690-863, gnl|rn3|chr11 (52340427-52340694) | |
| 690-863, gnl|xenTro1|scaffold_60 (1572717-1572985) | |
| 925-1062, gnl|bosTau2|chr1 (28858486-28858623) | |
| 925-1062, gnl|canFam2|chr1 (26490422-26490283) | |
| 925-1062, gnl|dasNov1|scaffold_10004 (81860-81721) | |
| 925-1062, gnl|echTel1|scaffold_40430 (5723-5860) | |
| 925-1062, gnl|hg17|chr18 (47468162-47468301) | |
| 925-1062, gnl|Hg17|chr3 (109368524-109368387) | |
| 925-1062, gnl|loxAfr1|scaffold_57232 (6348-6487) | |
| 925-1062, gnl|Mm7|chr16 (49519968-49520105) | |
| 925-1062, gnl|mm7|chr18 (73500098-73499927) | |
| 925-1062, gnl|monDom2|scaffold_24 (574670-574809) | |
| 925-1062, gnl|oryCun1|scaffold_202088 (37821-37683) | |
| 925-1062, gnl|panTro1|chr17 (44072555-44072694) | |
| 925-1062, gnl|rheMac2|chr18 (44806365-44806503) | |
| 925-1062, gnl|rn3|chr18 (69946120-69945946) | |
| 1408-1572, gnl|bosTau2|chr17 (24887294-24887459) | |
| 1408-1572, gnl|Hg17|chr12 (28209906-28210062) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cte (0.58548) | |
| ova (0.387397) | |
| bla (0.248694) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| cut (0.169924) | |
| lun (0.150489) | |
| spl (0.143184) | |
| cst (0.140036) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| ova (0.387397) | |
| bla (0.248694) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| cut (0.169924) | |
| lun (0.150489) | |
| spl (0.143184) | |
| cst (0.140036) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| ldo (0.0970026) |