Ss1.1-Tra1-TCH01F110008.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCGCTGCGGGCAGTGAGTGTGGAGGCGCGGACGCGCGGCGGAGCTCGAGCTGCTGCAG CTGCTGCCGCCGCCGGAGGAACCTTGACCCCCGCGCTCCGGACACCCCGGGCCTCGCCAT GGCTGACCAGCTGACTGAGGAGCAGATTGCAGAATTCAAGGAGGCCTTCTCCCTCTTCGA CAAGGATGGAGATGGCACTATCACCACCAAGGAGTTGGGGACAGTGATGAGATCCCTGGG ACAGAACCCCACCGAAGCCGAGCTGCAGGACATGATCAATGAGGTGGACGCGGATGGGAA CGGGACCATCGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGAAGGATACAGA CAGCGAGGAGGAAATCCGAGAGGCCTTCCGTGTTTTTGACAAGGATGGCAACGGCTACAT CAGCGCCGCAGAGCTGCGCCACGTAATGACGAACCTGGGTGAGAAGCTGACCGACGAGGA AGTGGATGAGATGATCAGAGAGGCTGACATCGACGGAGACGGCCAGGTCAATTATGAAGA GTTTGTACAGATGATGACGGCAAAGTGAAGGCCCCGGGCAGCTGGCGATGCCCGTTCTCT TGATCTCTCTTCCCGCGCGCACACTCTCTTCAACACTCCCCTGCGTATCCCGGTTCTAGC AAACACCAATTGATTGACTGAGAATCTGATAAAGCAACAAAAGATTGTCCCAAGCTGCAT GATTGCTCTTTCTCTTCCTCCTCAGTCTCCTCCCACGGCCCCCCATCTATTCCTTTTGCC CTCCCCCGCCCCATGCACATCTTCCGAGGCCTGATGCATTCATAAAATGAGCCCCCCACT CCCCTTGGGGGGCCCTCTGCCCTCCTCCCGCCCGGGTGGCTCTCGTCCGTTTTGGTTTGT TTCCTTACGTTTGTCATCTTATTTTGGGTGCCGGAGTGACTGCCAGCCCTGTCCTAGGAC CTGCTAGGGAGGGGCCTCGGGCCTCAGCCCCCAGCTGGGGAGGAAAGCAGCCTCTGGCCA TTGCATGCAACCAGCCACGTGAGTCCATGTGTCCATCCCGGAAGCCTGTTGGGGCAGGGG TGCCAAGACAGGCATTCCAGAAGGACTGAGGGCGGGGGTAGGGGGGAGGTTCCAGAGCTG CGTTGACTGAATGTGGCCCAGGAGGAGGTCAAGGGGCGAGGGAGTCTTGGAAGCTGGCAT TCTTTACCGCTTGAGGAGGCCAACCCACAGAAGGGGCCGGGCAGAGTGGACAACACTCAG ATCCCGTGGGCCACTCTTCTGAAACATCCCATTGGCTTCCCGAGGGCGGGCCAGGTGGGG GCGCTGCCCCGGCCCCTCTGAACATGCTCAGCCCACGTCCCGAAGTGATCTCAAGCTGTC CTGTAAATACCTGGTGCTAACATCCCATGTGCTGCCTGTGCCGCCCCGCCCACCTGCATC CAGATCCCTGCTTCGGCATGGATGTGGGATGGCCGCTTTGTGATGTGCTGGTTATCTTTC CTTTTTCTTCTCTACGCCCCTGAAAACTTTAATTTTATCCGAAACCACATCGGGCTAGCT GAGGGCGAGGAGAGGGCAGATGCGCCCCACCTCGCTCTCCAGGGAACACTCCTGCAATAA AGCCATCCTGTCGGCCAGCTGGCCCCGGGGGCGCAGGCAGCTCCGCTTCCTGGTCAGCCG GCCCCTCCCGCTTCCCCGTGGTGACTTGGCTGGCTCCCCCACCTCTGCGCTGTCTCCGGG CCCGCCCCTCCCCTCGCCCACCTGCCTGCCCCCACGCACCCCAGCGGAGAGCATGATCCG TGACCTTGCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCGCTGCGGGCAGTGAGTGTGGAGGCGCGGACGCGCGGCGGAGCTCGAGCTGCTGCAG CTGCTGCCGCCGCCGGAGGAACCTTGACCCCCGCGCTCCGGACACCCCGGGCCTCGCCAT GGCTGACCAGCTGACTGAGGAGCAGATTGCAGAATTCAAGGAGGCCTTCTCCCTCTTCGA CAAGGATGGAGATGGCACTATCACCACCAAGGAGTTGGGGACAGTGATGAGATCCCTGGG ACAGAACCCCACCGAAGCCGAGCTGCAGGACATGATCAATGAGGTGGACGCGGATGGGAA CGGGACCATCGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGAAGGATACAGA CAGCGAGGAGGAAATCCGAGAGGCCTTCCGTGTTTTTGACAAGGATGGCAACGGCTACAT CAGCGCCGCAGAGCTGCGCCACGTAATGACGAACCTGGGTGAGAAGCTGACCGACGAGGA AGTGGATGAGATGATCAGAGAGGCTGACATCGACGGAGACGGCCAGGTCAATTATGAAGA GTTTGTACAGATGATGACGGCAAAGTGAAGGCCCCGGGCAGCTGGCGATGCCCGTTCTCT TGATCTCTCTTCCCGCGCGCACACTCTCTTCAACACTCCCCTGCGTATCCCGGTTCTAGC AAACACCAATTGATTGACTGAGAATCTGATAAAGCAACAAAAGATTGTCCCAAGCTGCAT GATTGCTCTTTCTCTTCCTCCTCAGTCTCCTCCCACGGCCCCCCATCTATTCCTTTTGCC CTCCCCCGCCCCATGCACATCTTCCGAGGCCTGATGCATTCATAAAATGAGCCCCCCACT CCCCTTGGGGGGCCCTCTGCCCTCCTCCCGCCCGGGTGGCTCTCGTCCGTTTTGGTTTGT TTCCTTACGTTTGTCATCTTATTTTGGGTGCCGGAGTGACTGCCAGCCCTGTCCTAGGAC CTGCTAGGGAGGGGCCTCGGGCCTCAGCCCCCAGCTGGGGAGGAAAGCAGCCTCTGGCCA TTGCATGCAACCAGCCACGTGAGTCCATGTGTCCATCCCGGAAGCCTGTTGGGGCAGGGG TGCCAAGACAGGCATTCCAGAAGGACTGAGGGCGGGGGTAGGGGGGAGGTTCCAGAGCTG CGTTGACTGAATGTGGCCCAGGAGGAGGTCAAGGGGCGAGGGAGTCTTGGAAGCTGGCAT TCTTTACCGCTTGAGGAGGCCAACCCACAGAAGGGGCCGGGCAGAGTGGACAACACTCAG ATCCCGTGGGCCACTCTTCTGAAACATCCCATTGGCTTCCCGAGGGCGGGCCAGGTGGGG GCGCTGCCCCGGCCCCTCTGAACATGCTCAGCCCACGTCCCGAAGTGATCTCAAGCTGTC CTGTAAATACCTGGTGCTAACATCCCATGTGCTGCCTGTGCCGCCCCGCCCACCTGCATC CAGATCCCTGCTTCGGCATGGATGTGGGATGGCCGCTTTGTGATGTGCTGGTTATCTTTC CTTTTTCTTCTCTACGCCCCTGAAAACTTTAATTTTATCCGAAACCACATCGGGCTAGCT GAGGGCGAGGAGAGGGCAGATGCGCCCCACCTCGCTCTCCAGGGAACACTCCTGCAATAA AGCCATCCTGTCGGCCAGCTGGCCCCGGGGGCGCAGGCAGCTCCGCTTCCTGGTCAGCCG GCCCCTCCCGCTTCCCCGTGGTGACTTGGCTGGCTCCCCCACCTCTGCGCTGTCTCCGGG CCCGCCCCTCCCCTCGCCCACCTGCCTGCCCCCACGCACCCCAGCGGAGAGCATGATCCG TGACCTTGCTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 115-575, gnl|bosTau2|chr13 (29058130-29057673) | |
| 115-575, gnl|Hg17|chr10 (5531411-5530959) | |
| 115-575, gnl|Mm7|chr13 (3738634-3739054) | |
| 118-573, gnl|bosTau2|chr13 (29071096-29071549) | |
| 118-573, gnl|Hg17|chr10 (5557048-5557502) | |
| 118-573, gnl|Mm7|chr13 (3688571-3688120) | |
| 147-303, gnl|bosTau2|chr10 (69309841-69309685) | |
| 147-303, gnl|canFam2|chr8 (64442345-64442523) | |
| 147-303, gnl|danRer3|chr17 (32053103-32052950) | |
| 147-303, gnl|dasNov1|scaffold_43485 (248-426) | |
| 147-303, gnl|echTel1|scaffold_282638 (14756-14608) | |
| 147-303, gnl|fr1|chrUn (137217825-137217993) | |
| 147-303, gnl|galGal2|chr5 (40675653-40675818) | |
| 147-303, gnl|hg17|chr14 (89937321-89937499) | |
| 147-303, gnl|Hg17|chr14 (89937350-89937506) | |
| 147-303, gnl|loxAfr1|scaffold_8914 (23129-22989) | |
| 147-303, gnl|mm7|chr12 (97698900-97699070) | |
| 147-303, gnl|Mm7|chr12 (97698921-97699077) | |
| 147-303, gnl|monDom2|scaffold_8 (35059950-35059768) | |
| 147-303, gnl|oryCun1|scaffold_191855 (47718-47539) | |
| 147-303, gnl|panTro1|chr15 (90203430-90203608) | |
| 147-303, gnl|rheMac2|chr7 (153612831-153613009) | |
| 147-303, gnl|rn3|chr6 (124485668-124485846) | |
| 147-303, gnl|tetNig1|chr14 (8622867-8623012) | |
| 147-303, gnl|xenTro1|scaffold_22 (2312074-2312256) | |
| 402-539, gnl|bosTau2|chr10 (69307073-69306936) | |
| 402-539, gnl|canFam2|chr8 (64445141-64445296) | |
| 402-539, gnl|danRer3|chr17 (32051100-32050954) | |
| 402-539, gnl|dasNov1|scaffold_43485 (3488-3641) | |
| 402-539, gnl|echTel1|scaffold_184842 (3751-3893) | |
| 402-539, gnl|fr1|chrUn (137220690-137220841) | |
| 402-539, gnl|galGal2|chr5 (40679244-40679413) | |
| 402-539, gnl|hg17|chr14 (89940474-89940625) | |
| 402-539, gnl|Hg17|chr14 (89940474-89940611) | |
| 402-539, gnl|loxAfr1|scaffold_3280 (43067-42915) | |
| 402-539, gnl|mm7|chr12 (97701448-97701595) | |
| 402-539, gnl|Mm7|chr12 (97701448-97701585) | |
| 402-539, gnl|monDom2|scaffold_8 (35056097-35055953) | |
| 402-539, gnl|oryCun1|scaffold_191855 (45330-45179) | |
| 402-539, gnl|panTro1|chr15 (90206575-90206726) | |
| 402-539, gnl|rheMac2|chr7 (153615961-153616112) | |
| 402-539, gnl|rn3|chr6 (124488221-124488365) | |
| 402-539, gnl|tetNig1|chr14 (8625299-8625452) | |
| 402-539, gnl|xenTro1|scaffold_22 (2314113-2314258) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-575, gnl|bosTau2|chr13 (29058130-29057673) | |
| 115-575, gnl|Hg17|chr10 (5531411-5530959) | |
| 115-575, gnl|Mm7|chr13 (3738634-3739054) | |
| 118-573, gnl|bosTau2|chr13 (29071096-29071549) | |
| 118-573, gnl|Hg17|chr10 (5557048-5557502) | |
| 118-573, gnl|Mm7|chr13 (3688571-3688120) | |
| 147-303, gnl|bosTau2|chr10 (69309841-69309685) | |
| 147-303, gnl|canFam2|chr8 (64442345-64442523) | |
| 147-303, gnl|danRer3|chr17 (32053103-32052950) | |
| 147-303, gnl|dasNov1|scaffold_43485 (248-426) | |
| 147-303, gnl|echTel1|scaffold_282638 (14756-14608) | |
| 147-303, gnl|fr1|chrUn (137217825-137217993) | |
| 147-303, gnl|galGal2|chr5 (40675653-40675818) | |
| 147-303, gnl|hg17|chr14 (89937321-89937499) | |
| 147-303, gnl|Hg17|chr14 (89937350-89937506) | |
| 147-303, gnl|loxAfr1|scaffold_8914 (23129-22989) | |
| 147-303, gnl|mm7|chr12 (97698900-97699070) | |
| 147-303, gnl|Mm7|chr12 (97698921-97699077) | |
| 147-303, gnl|monDom2|scaffold_8 (35059950-35059768) | |
| 147-303, gnl|oryCun1|scaffold_191855 (47718-47539) | |
| 147-303, gnl|panTro1|chr15 (90203430-90203608) | |
| 147-303, gnl|rheMac2|chr7 (153612831-153613009) | |
| 147-303, gnl|rn3|chr6 (124485668-124485846) | |
| 147-303, gnl|tetNig1|chr14 (8622867-8623012) | |
| 147-303, gnl|xenTro1|scaffold_22 (2312074-2312256) | |
| 402-539, gnl|bosTau2|chr10 (69307073-69306936) | |
| 402-539, gnl|canFam2|chr8 (64445141-64445296) | |
| 402-539, gnl|danRer3|chr17 (32051100-32050954) | |
| 402-539, gnl|dasNov1|scaffold_43485 (3488-3641) | |
| 402-539, gnl|echTel1|scaffold_184842 (3751-3893) | |
| 402-539, gnl|fr1|chrUn (137220690-137220841) | |
| 402-539, gnl|galGal2|chr5 (40679244-40679413) | |
| 402-539, gnl|hg17|chr14 (89940474-89940625) | |
| 402-539, gnl|Hg17|chr14 (89940474-89940611) | |
| 402-539, gnl|loxAfr1|scaffold_3280 (43067-42915) | |
| 402-539, gnl|mm7|chr12 (97701448-97701595) | |
| 402-539, gnl|Mm7|chr12 (97701448-97701585) | |
| 402-539, gnl|monDom2|scaffold_8 (35056097-35055953) | |
| 402-539, gnl|oryCun1|scaffold_191855 (45330-45179) | |
| 402-539, gnl|panTro1|chr15 (90206575-90206726) | |
| 402-539, gnl|rheMac2|chr7 (153615961-153616112) | |
| 402-539, gnl|rn3|chr6 (124488221-124488365) | |
| 402-539, gnl|tetNig1|chr14 (8625299-8625452) | |
| 402-539, gnl|xenTro1|scaffold_22 (2314113-2314258) |
| Expressed library(ies): 44 entry(ies) | More info |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
| ill (1.40474) | |
| ece (1.37583) | |
| ebs (1.18301) | |
| cov (0.925069) | |
| fhi (0.847889) | |
| eru (0.720288) | |
| jej (0.593531) | |
| cte (0.58548) | |
| fty (0.527519) | |
| hyp (0.42851) | |
| mas (0.42061) | |
| tes (0.415628) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| duo (0.345602) | |
| ecc (0.345105) | |
| nje (0.33184) | |
| csp (0.322373) | |
| sme (0.305437) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| che (0.272628) | |
| nmm (0.265604) | |
| cbr (0.255951) | |
| eep (0.245128) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| sin (0.174948) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (1.40474) | |
| ece (1.37583) | |
| ebs (1.18301) | |
| cov (0.925069) | |
| fhi (0.847889) | |
| eru (0.720288) | |
| jej (0.593531) | |
| cte (0.58548) | |
| fty (0.527519) | |
| hyp (0.42851) | |
| mas (0.42061) | |
| tes (0.415628) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| duo (0.345602) | |
| ecc (0.345105) | |
| nje (0.33184) | |
| csp (0.322373) | |
| sme (0.305437) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| che (0.272628) | |
| nmm (0.265604) | |
| cbr (0.255951) | |
| eep (0.245128) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| sin (0.174948) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |