Non-Coding RNA Search

Ss1.1-Tra1-TCH01F110028.5

Sequence:


               
               ATATTGTGAGACAGATTTTAAGAGATAAATTTGCAGGACAGGTGCCATTGATTTCTCCAA
ATAAAATAAGTACCTAAATTAATTAACCCTATCACAAAATATCTTCCTTTTTTTTTTTTT
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TGTTAATTCTTTTAGTATGTAACTAAATCCATGCAGAAACAATTTAAAAGTCAGTATCGC
AGGAGTGATATTGCTGGGAATCCTATTTGGAAGAGACCGATAATTCAGGATGAATGTATC
CAGGGAGCCTGGATCAGAGAAGGGGTGGATTGAGGCACTAGAGGGCTGGAATGGGGTTGG
AAAAACTGCTAGTGCCCCAAGTCAGAATAGTTAAACCTGAGAAGTTCCACAGTGGTTATG
AGAGGTGGAAACGTGTGTGGCACGAGCCAGGGACCCCAGTATTTTGGAATTGGGGATTGG
ACACTTCTGAACTTGATGGGTTAAAGAACATAGAAAGAAAACTCAATGGTTTTTCACATT
CTGCTCTCTGGATTGAAGGTGTCTCTTCTTTACCAGCAACAATAGCCGTAGGCCTCTTAC
TTTGGATCCTGGGGAGAGCTCTCAGCTCACATTGCACGTTTGTTTTGCTTGTCCTGAAGG
CTCCTTCAAGCTGAAGGACTGGCGCTTCATGACAGTGAGTGTGGAGATTGTGAACAACTG
GAGATTGTGAACAACTGCCCTCATGGCTTTTTTCTTCTTCCTCAGCTTTGCCTCCTGTTG
CTTGGACTGTGCGTGAGTGAAAACCCAGAAGAAGATGGCAGGTGATCTGGTTACAATGGA
ATCACAGGTGAGTAGGGCATTCCTCTCTCTCCTGAAATTGCCTCTCTCTTGCCAGTATAT
GGGCACATTTCTCCTGCTGGCACACATGTTCCAAGTGAACTCAGAACACTTTTCAAGGAT
CTGAGCTTCAGTTACATTTCCCTAGAACTCCAGAGCTGTCATGTGGGGTCAAGGACTCAT
CAAATGGTGATCGCCTTCCCAGCATTGCGCTAAGATGTTCCAGTCTCCGTGGGCGTGGTG
TTCTCACAGGAGAGAGGAGAAAGGTTTTCTTTTTTCTCATCCAGCCCATCGCCTAGTTAC
TTAAAAAAAAAATTGCTCATTAACAATTTTATTAACTGTAATAGGCTTAGGATTGAGGTG
AATACAGGTAATAAAGATGAATAAGGAACAAAACATTACAGCCCAACAGAAAGGCAGCTG
TTTCCACAGGTGAGGTTACTCAGTCCAGTGTTACAGGTGCTGGCGGTGCGGTGATTAGTG
TTGTGGGAAAGCCACGGATGGTTACCCCAGAGAAGGCAGTGGGGAATCTTTCACTTACTT
TTTCAAATTTTAAACCCCTTAAAGTTTTGATAGACTATATTTGTGCTTTTTAAAAAACGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTGTGAGACAGATTTTAAGAGATAAATTTGCAGGACAGGTGCCATTGATTTCTCCAA
ATAAAATAAGTACCTAAATTAATTAACCCTATCACAAAATATCTTCCTTTTTTTTTTTTT
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TGTTAATTCTTTTAGTATGTAACTAAATCCATGCAGAAACAATTTAAAAGTCAGTATCGC
AGGAGTGATATTGCTGGGAATCCTATTTGGAAGAGACCGATAATTCAGGATGAATGTATC
CAGGGAGCCTGGATCAGAGAAGGGGTGGATTGAGGCACTAGAGGGCTGGAATGGGGTTGG
AAAAACTGCTAGTGCCCCAAGTCAGAATAGTTAAACCTGAGAAGTTCCACAGTGGTTATG
AGAGGTGGAAACGTGTGTGGCACGAGCCAGGGACCCCAGTATTTTGGAATTGGGGATTGG
ACACTTCTGAACTTGATGGGTTAAAGAACATAGAAAGAAAACTCAATGGTTTTTCACATT
CTGCTCTCTGGATTGAAGGTGTCTCTTCTTTACCAGCAACAATAGCCGTAGGCCTCTTAC
TTTGGATCCTGGGGAGAGCTCTCAGCTCACATTGCACGTTTGTTTTGCTTGTCCTGAAGG
CTCCTTCAAGCTGAAGGACTGGCGCTTCATGACAGTGAGTGTGGAGATTGTGAACAACTG
GAGATTGTGAACAACTGCCCTCATGGCTTTTTTCTTCTTCCTCAGCTTTGCCTCCTGTTG
CTTGGACTGTGCGTGAGTGAAAACCCAGAAGAAGATGGCAGGTGATCTGGTTACAATGGA
ATCACAGGTGAGTAGGGCATTCCTCTCTCTCCTGAAATTGCCTCTCTCTTGCCAGTATAT
GGGCACATTTCTCCTGCTGGCACACATGTTCCAAGTGAACTCAGAACACTTTTCAAGGAT
CTGAGCTTCAGTTACATTTCCCTAGAACTCCAGAGCTGTCATGTGGGGTCAAGGACTCAT
CAAATGGTGATCGCCTTCCCAGCATTGCGCTAAGATGTTCCAGTCTCCGTGGGCGTGGTG
TTCTCACAGGAGAGAGGAGAAAGGTTTTCTTTTTTCTCATCCAGCCCATCGCCTAGTTAC
TTAAAAAAAAAATTGCTCATTAACAATTTTATTAACTGTAATAGGCTTAGGATTGAGGTG
AATACAGGTAATAAAGATGAATAAGGAACAAAACATTACAGCCCAACAGAAAGGCAGCTG
TTTCCACAGGTGAGGTTACTCAGTCCAGTGTTACAGGTGCTGGCGGTGCGGTGATTAGTG
TTGTGGGAAAGCCACGGATGGTTACCCCAGAGAAGGCAGTGGGGAATCTTTCACTTACTT
TTTCAAATTTTAAACCCCTTAAAGTTTTGATAGACTATATTTGTGCTTTTTAAAAAACGT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               505-820, gnl|bosTau2|chr13 (39978760-39979075)
               

               
               505-820, gnl|Hg17|chr8 (180643-180940)
               


               
               826-1375, gnl|bosTau2|chr13 (39979324-39979873)
               

               
               826-1375, gnl|Hg17|chr8 (180947-181477)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               505-820, gnl|bosTau2|chr13 (39978760-39979075)
               

               
               505-820, gnl|Hg17|chr8 (180643-180940)
               


               
               826-1375, gnl|bosTau2|chr13 (39979324-39979873)
               

               
               826-1375, gnl|Hg17|chr8 (180947-181477)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               thg (0.126791)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	505-820, gnl\|bosTau2\|chr13 (39978760-39979075)
	505-820, gnl\|Hg17\|chr8 (180643-180940)

	826-1375, gnl\|bosTau2\|chr13 (39979324-39979873)
	826-1375, gnl\|Hg17\|chr8 (180947-181477)