Non-Coding RNA Search

Ss1.1-Tra1-TCH01F110035.5

Sequence:


               
               TGAGCACCAGCCCCCCTCATTTTCCTACTTTCTCCATCTTGATTCTTGCACAAGCCGACT
GCACCTCTCTGTTTCCACATCACAACCAGAGCCAGGTATTAGGCCTCATGTGCTCTGCTC
AGCAGATTCTGCCACGTTGCATGGACCCAAGCATTTTAATTCTATGCAAAATAATAGCAG
TGCAACCAGAATTCTTCCTTACCTTTTCCTTCTTGGAATTTGGAATTTCTAGCTTTTTTC
AGTAACGTAAGTAGAATAAATAGTATTAGGATGTGTTTGTGAAATAGCATCCTTGTGCTC
GTTTGAGCTTGGTATTGGTGGCTACACTAATTTCCCTTTGCTCTCAAAATAGCAAAGTGC
GTTGCTATGTGCAGATAAATGCCTGAATGTGGCAAATAACATAAAATAGATTAATATTCT
ATTATTATAGCCTTTATGCAAAAAAATAAAATTTTGGTCTACACTGAAAGAGCGTTAAAA
TGCAATAAGTTTTCCATGTTTTTCTCTATTTAAATACATCTCCCAACGGCACAAAGGTTA
TTGGCCATTGCTTGCCCTTCTTTTTTAATATCTGAACCCTCTGGATTCCTGTGAATGCTT
TCAAACAGAAATGGTGTATATTTTTAAGCACCTTTCCCCCAATTTGTCCAGATCCCATAT
ATACGATAACCTCTGATAAACAGCCTTTTTTCTGGGTTTTCTGTTGGGCAATTATCTTGC
ATAGAACTTTAGCTTTTAGCCATTCAGGCAACACTCAAAACTAACATTAGGATAGGGTTT
CATGTGTCAGACATTTACTTAATGACTACAGTTAAACTTGTTTGACGTCAAATCAGTGAC
AGAGAAATGGAAAGAAAGCAATTGTGAAGGTAATACCTGAGCTTTAGTTGGGCACATGTA
GCATATGAAGAGGTAATGCATTTTTTTAAAAAATCTTTTTTAAAAAGTGGGGTTTTTTCA
GAGAACGTTGTACATTCTGAAATCTATAGACAATTAAGGAATTCCTGCTGTGGCACATGG
GATTAAGGATCCTGTGTTTCTGTGGCGGCGCAGGTTCAATCCCCAGCCCAGCGCAGTGAG
TTAAAGATCCAACATTGCCACAACTGTGGTATAGGTTGCAATTGCAGCTCAGATTCGATC
CCTGGCCTCCCTGTGGTCATCGAATTCCATGTGCTACAAGTGCAGCCATTAGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGCACCAGCCCCCCTCATTTTCCTACTTTCTCCATCTTGATTCTTGCACAAGCCGACT
GCACCTCTCTGTTTCCACATCACAACCAGAGCCAGGTATTAGGCCTCATGTGCTCTGCTC
AGCAGATTCTGCCACGTTGCATGGACCCAAGCATTTTAATTCTATGCAAAATAATAGCAG
TGCAACCAGAATTCTTCCTTACCTTTTCCTTCTTGGAATTTGGAATTTCTAGCTTTTTTC
AGTAACGTAAGTAGAATAAATAGTATTAGGATGTGTTTGTGAAATAGCATCCTTGTGCTC
GTTTGAGCTTGGTATTGGTGGCTACACTAATTTCCCTTTGCTCTCAAAATAGCAAAGTGC
GTTGCTATGTGCAGATAAATGCCTGAATGTGGCAAATAACATAAAATAGATTAATATTCT
ATTATTATAGCCTTTATGCAAAAAAATAAAATTTTGGTCTACACTGAAAGAGCGTTAAAA
TGCAATAAGTTTTCCATGTTTTTCTCTATTTAAATACATCTCCCAACGGCACAAAGGTTA
TTGGCCATTGCTTGCCCTTCTTTTTTAATATCTGAACCCTCTGGATTCCTGTGAATGCTT
TCAAACAGAAATGGTGTATATTTTTAAGCACCTTTCCCCCAATTTGTCCAGATCCCATAT
ATACGATAACCTCTGATAAACAGCCTTTTTTCTGGGTTTTCTGTTGGGCAATTATCTTGC
ATAGAACTTTAGCTTTTAGCCATTCAGGCAACACTCAAAACTAACATTAGGATAGGGTTT
CATGTGTCAGACATTTACTTAATGACTACAGTTAAACTTGTTTGACGTCAAATCAGTGAC
AGAGAAATGGAAAGAAAGCAATTGTGAAGGTAATACCTGAGCTTTAGTTGGGCACATGTA
GCATATGAAGAGGTAATGCATTTTTTTAAAAAATCTTTTTTAAAAAGTGGGGTTTTTTCA
GAGAACGTTGTACATTCTGAAATCTATAGACAATTAAGGAATTCCTGCTGTGGCACATGG
GATTAAGGATCCTGTGTTTCTGTGGCGGCGCAGGTTCAATCCCCAGCCCAGCGCAGTGAG
TTAAAGATCCAACATTGCCACAACTGTGGTATAGGTTGCAATTGCAGCTCAGATTCGATC
CCTGGCCTCCCTGTGGTCATCGAATTCCATGTGCTACAAGTGCAGCCATTAGAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               11-997, gnl|bosTau2|chr27 (17710759-17711701)
               

               
               11-997, gnl|Hg17|chr8 (9674569-9675547)
               

               
               11-997, gnl|Mm7|chr8 (33590410-33589459)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-997, gnl|bosTau2|chr27 (17710759-17711701)
               

               
               11-997, gnl|Hg17|chr8 (9674569-9675547)
               

               
               11-997, gnl|Mm7|chr8 (33590410-33589459)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               ton (0.1755)
               

               
               eye (0.170503)
               

               
               ssp (0.13552)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               ssp (0.13552)
               

               
               ldo (0.0970026)

	11-997, gnl\|bosTau2\|chr27 (17710759-17711701)
	11-997, gnl\|Hg17\|chr8 (9674569-9675547)
	11-997, gnl\|Mm7\|chr8 (33590410-33589459)