Ss1.1-Tra1-TCH01F110048.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGTCCACGAACGGAATGACGGGAGAGACCCCTTCCCCCTCCTGATGAACCGCCAGCGC ATGCCCAAGGTTTTGGTGGAGAATGCAAAGAACTTCCCTCAGTGTGTGCTGGAAATCTCT GATCAGGAGGTGCTGGAATGGTACACCGCCAAGGACTTCATCGTCGGAAAGCCACTCACT ATGCTGGGGAGAACCTTCTTCATTTATGACTGTGATCCATTTACTCGGCAGTATTACAAA GAGAAGTTTGGCATCTCCGATCTACCACGCATTGACGTGAGCAAGAAGGAGCCGCCTCCT GTGAAACAGGAATTGCCTCCCTATAATGGTTATGGACTCATCGAAGACTCTGCTCAGAAT TGCTTGGCTCTCATTCCAAAAGCTCCCAAAAAAGATGTCATTAAAATGCTGATGAATGAC AACAAGGTGCTTCGTTATTTGGCTGCACTGGAATCCCCCATCCCGGAAGACAAGGGCCGC CGGTTTGTCTTATCTTATTTTCTAGCCACTGACATGATCAGTATCTTTGAGCCTCCTGTT CGAAATTCAGGGATCATTGGGGGCAAGTACCTTGGCAGAACTAAAGTTGTCAAGCCCGAC TCCTCCATGGAAAACCCCATCTACTATGGCCCCAGTGACTTCTTCATTGGTGCCGTGATT GAAGTGTTTGGCCACCGGTTTGTCATCCTCGATTCCGATGACTATGTTTTGAAATACATG GAGAGCAACCCTGCCCAGTTTTCCCCAGAAGCTCTCCTGTCAATTCAGAACCACATTCGA AGGCGAGACACTCCTGCACTGGAACTGGACAGCCAGCGGACAGAAAAGGACCCAGGCACA CAGGAACTAGAGGTGCTGATTGACACGATCCAGAAGCAGCTGAAAGATCACCCGTGCAGG GACAGCATCCGCGAGGCCTTTCGGATTTATGACACGGAGGCTTCAGGATACGTGGACAGG GAGACATTCTTTAAAATCTGCGACTCTCTGCACCTCCCGGTGGATGATTCTCTGATTAAG GAGCTCGTCAGGATGTGCTCCCACGGAGACGACAAGATGGACTATTCCAGCTTTGTCCGC GCTTTCTCCCACTGAGCTGCTGAGGACGAGAGCAGCACGTTTCGAGGTCAGGCCTACACA CACCTTGTGCTCTTCCTAGAGGCCTTTACAGAGCTCTTGAAGTGATGTTTCGTTTCTGAG TCTTATATTCCACTACCACTGAAGCCTAAATTAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGTCCACGAACGGAATGACGGGAGAGACCCCTTCCCCCTCCTGATGAACCGCCAGCGC ATGCCCAAGGTTTTGGTGGAGAATGCAAAGAACTTCCCTCAGTGTGTGCTGGAAATCTCT GATCAGGAGGTGCTGGAATGGTACACCGCCAAGGACTTCATCGTCGGAAAGCCACTCACT ATGCTGGGGAGAACCTTCTTCATTTATGACTGTGATCCATTTACTCGGCAGTATTACAAA GAGAAGTTTGGCATCTCCGATCTACCACGCATTGACGTGAGCAAGAAGGAGCCGCCTCCT GTGAAACAGGAATTGCCTCCCTATAATGGTTATGGACTCATCGAAGACTCTGCTCAGAAT TGCTTGGCTCTCATTCCAAAAGCTCCCAAAAAAGATGTCATTAAAATGCTGATGAATGAC AACAAGGTGCTTCGTTATTTGGCTGCACTGGAATCCCCCATCCCGGAAGACAAGGGCCGC CGGTTTGTCTTATCTTATTTTCTAGCCACTGACATGATCAGTATCTTTGAGCCTCCTGTT CGAAATTCAGGGATCATTGGGGGCAAGTACCTTGGCAGAACTAAAGTTGTCAAGCCCGAC TCCTCCATGGAAAACCCCATCTACTATGGCCCCAGTGACTTCTTCATTGGTGCCGTGATT GAAGTGTTTGGCCACCGGTTTGTCATCCTCGATTCCGATGACTATGTTTTGAAATACATG GAGAGCAACCCTGCCCAGTTTTCCCCAGAAGCTCTCCTGTCAATTCAGAACCACATTCGA AGGCGAGACACTCCTGCACTGGAACTGGACAGCCAGCGGACAGAAAAGGACCCAGGCACA CAGGAACTAGAGGTGCTGATTGACACGATCCAGAAGCAGCTGAAAGATCACCCGTGCAGG GACAGCATCCGCGAGGCCTTTCGGATTTATGACACGGAGGCTTCAGGATACGTGGACAGG GAGACATTCTTTAAAATCTGCGACTCTCTGCACCTCCCGGTGGATGATTCTCTGATTAAG GAGCTCGTCAGGATGTGCTCCCACGGAGACGACAAGATGGACTATTCCAGCTTTGTCCGC GCTTTCTCCCACTGAGCTGCTGAGGACGAGAGCAGCACGTTTCGAGGTCAGGCCTACACA CACCTTGTGCTCTTCCTAGAGGCCTTTACAGAGCTCTTGAAGTGATGTTTCGTTTCTGAG TCTTATATTCCACTACCACTGAAGCCTAAATTAAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 89-315, gnl|bosTau2|chr23 (22351632-22351858) | |
| 89-315, gnl|canFam2|chr12 (23094894-23095054) | |
| 89-315, gnl|danRer3|chrNA (26793456-26793301) | |
| 89-315, gnl|dasNov1|scaffold_52518 (2075-2235) | |
| 89-315, gnl|echTel1|scaffold_324150 (52735-52895) | |
| 89-315, gnl|fr1|chrUn (130920562-130920721) | |
| 89-315, gnl|galGal2|chr3 (105406858-105406698) | |
| 89-315, gnl|hg17|chr6 (52437649-52437809) | |
| 89-315, gnl|Hg17|chr6 (52437652-52437878) | |
| 89-315, gnl|loxAfr1|scaffold_5444 (74188-74028) | |
| 89-315, gnl|mm7|chr1 (21168370-21168530) | |
| 89-315, gnl|Mm7|chr1 (21168373-21168599) | |
| 89-315, gnl|monDom2|scaffold_0 (184799829-184799669) | |
| 89-315, gnl|panTro1|chr5 (53456112-53456272) | |
| 89-315, gnl|rheMac2|chr4 (52140943-52141103) | |
| 89-315, gnl|rn3|chr9 (19709130-19709290) | |
| 89-315, gnl|tetNig1|chr14 (3770062-3770222) | |
| 89-315, gnl|xenTro1|scaffold_55 (1997806-1997966) | |
| 450-662, gnl|bosTau2|chr23 (22358012-22358224) | |
| 450-662, gnl|canFam2|chr12 (23107033-23107271) | |
| 450-662, gnl|danRer3|chrNA (26787487-26787248) | |
| 450-662, gnl|dasNov1|scaffold_40884 (7370-7132) | |
| 450-662, gnl|echTel1|scaffold_251461 (2492-2730) | |
| 450-662, gnl|fr1|chrUn (130922139-130922373) | |
| 450-662, gnl|galGal2|chr3 (105404034-105403786) | |
| 450-662, gnl|hg17|chr6 (52451773-52452011) | |
| 450-662, gnl|Hg17|chr6 (52451793-52452005) | |
| 450-662, gnl|loxAfr1|scaffold_5444 (56255-56018) | |
| 450-662, gnl|mm7|chr1 (21174220-21174458) | |
| 450-662, gnl|Mm7|chr1 (21174240-21174452) | |
| 450-662, gnl|monDom2|scaffold_0 (184786037-184785799) | |
| 450-662, gnl|oryCun1|scaffold_170829 (5410-5172) | |
| 450-662, gnl|panTro1|chr5 (53470900-53471138) | |
| 450-662, gnl|rheMac2|chr4 (52154717-52154955) | |
| 450-662, gnl|rn3|chr9 (19715299-19715536) | |
| 450-662, gnl|tetNig1|chr14 (3770775-3770997) | |
| 450-662, gnl|xenTro1|scaffold_55 (1999640-1999868) | |
| 809-1023, gnl|bosTau2|chr23 (22370646-22370860) | |
| 809-1023, gnl|canFam2|chr12 (23131078-23131352) | |
| 809-1023, gnl|dasNov1|scaffold_77918 (9656-9383) | |
| 809-1023, gnl|echTel1|scaffold_251461 (8124-8414) | |
| 809-1023, gnl|galGal2|chr3 (105402610-105402330) | |
| 809-1023, gnl|hg17|chr6 (52462846-52463119) | |
| 809-1023, gnl|Hg17|chr6 (52462893-52463107) | |
| 809-1023, gnl|loxAfr1|scaffold_33620 (38265-37988) | |
| 809-1023, gnl|mm7|chr1 (21184927-21185212) | |
| 809-1023, gnl|Mm7|chr1 (21184962-21185200) | |
| 809-1023, gnl|monDom2|scaffold_0 (184769698-184769411) | |
| 809-1023, gnl|oryCun1|scaffold_176875 (26734-27007) | |
| 809-1023, gnl|panTro1|chr5 (53482012-53482285) | |
| 809-1023, gnl|rheMac2|chr4 (52165749-52166022) | |
| 809-1023, gnl|rn3|chr9 (19745553-19745848) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-315, gnl|bosTau2|chr23 (22351632-22351858) | |
| 89-315, gnl|canFam2|chr12 (23094894-23095054) | |
| 89-315, gnl|danRer3|chrNA (26793456-26793301) | |
| 89-315, gnl|dasNov1|scaffold_52518 (2075-2235) | |
| 89-315, gnl|echTel1|scaffold_324150 (52735-52895) | |
| 89-315, gnl|fr1|chrUn (130920562-130920721) | |
| 89-315, gnl|galGal2|chr3 (105406858-105406698) | |
| 89-315, gnl|hg17|chr6 (52437649-52437809) | |
| 89-315, gnl|Hg17|chr6 (52437652-52437878) | |
| 89-315, gnl|loxAfr1|scaffold_5444 (74188-74028) | |
| 89-315, gnl|mm7|chr1 (21168370-21168530) | |
| 89-315, gnl|Mm7|chr1 (21168373-21168599) | |
| 89-315, gnl|monDom2|scaffold_0 (184799829-184799669) | |
| 89-315, gnl|panTro1|chr5 (53456112-53456272) | |
| 89-315, gnl|rheMac2|chr4 (52140943-52141103) | |
| 89-315, gnl|rn3|chr9 (19709130-19709290) | |
| 89-315, gnl|tetNig1|chr14 (3770062-3770222) | |
| 89-315, gnl|xenTro1|scaffold_55 (1997806-1997966) | |
| 450-662, gnl|bosTau2|chr23 (22358012-22358224) | |
| 450-662, gnl|canFam2|chr12 (23107033-23107271) | |
| 450-662, gnl|danRer3|chrNA (26787487-26787248) | |
| 450-662, gnl|dasNov1|scaffold_40884 (7370-7132) | |
| 450-662, gnl|echTel1|scaffold_251461 (2492-2730) | |
| 450-662, gnl|fr1|chrUn (130922139-130922373) | |
| 450-662, gnl|galGal2|chr3 (105404034-105403786) | |
| 450-662, gnl|hg17|chr6 (52451773-52452011) | |
| 450-662, gnl|Hg17|chr6 (52451793-52452005) | |
| 450-662, gnl|loxAfr1|scaffold_5444 (56255-56018) | |
| 450-662, gnl|mm7|chr1 (21174220-21174458) | |
| 450-662, gnl|Mm7|chr1 (21174240-21174452) | |
| 450-662, gnl|monDom2|scaffold_0 (184786037-184785799) | |
| 450-662, gnl|oryCun1|scaffold_170829 (5410-5172) | |
| 450-662, gnl|panTro1|chr5 (53470900-53471138) | |
| 450-662, gnl|rheMac2|chr4 (52154717-52154955) | |
| 450-662, gnl|rn3|chr9 (19715299-19715536) | |
| 450-662, gnl|tetNig1|chr14 (3770775-3770997) | |
| 450-662, gnl|xenTro1|scaffold_55 (1999640-1999868) | |
| 809-1023, gnl|bosTau2|chr23 (22370646-22370860) | |
| 809-1023, gnl|canFam2|chr12 (23131078-23131352) | |
| 809-1023, gnl|dasNov1|scaffold_77918 (9656-9383) | |
| 809-1023, gnl|echTel1|scaffold_251461 (8124-8414) | |
| 809-1023, gnl|galGal2|chr3 (105402610-105402330) | |
| 809-1023, gnl|hg17|chr6 (52462846-52463119) | |
| 809-1023, gnl|Hg17|chr6 (52462893-52463107) | |
| 809-1023, gnl|loxAfr1|scaffold_33620 (38265-37988) | |
| 809-1023, gnl|mm7|chr1 (21184927-21185212) | |
| 809-1023, gnl|Mm7|chr1 (21184962-21185200) | |
| 809-1023, gnl|monDom2|scaffold_0 (184769698-184769411) | |
| 809-1023, gnl|oryCun1|scaffold_176875 (26734-27007) | |
| 809-1023, gnl|panTro1|chr5 (53482012-53482285) | |
| 809-1023, gnl|rheMac2|chr4 (52165749-52166022) | |
| 809-1023, gnl|rn3|chr9 (19745553-19745848) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ebs (0.236602) | |
| ece (0.229305) | |
| tes (0.207814) | |
| che (0.136314) | |
| cly (0.120642) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| ece (0.229305) | |
| tes (0.207814) | |
| che (0.136314) | |
| cly (0.120642) |