Non-Coding RNA Search

Ss1.1-Tra1-TCH01F110067.5

Sequence:


               
               AGTCGAATTAGCTTCCATCTCTTCATGAGCTGTGTGATCAGCCTCAGCTAGGTTCCCTTC
TGAAGGAAGAGGTTTAGATACTTCTTGTGTACCATCACCAGAACCTGCTATATCTTTCTC
ATTTTCTTCTTCCTCACCATCTTGGGCTGTTAGAAAGGTATCATCTTCACCTTCTTGAGC
TTCAATTTCCTGACTTTCGATGTCCTCTTTCTCTATATCTTCTATTGCTTCTGCCTCTAT
TAATTCATGAGCTCTCTTGTTCTCTTCTGCAGAAAGTAACTCCTTGGAATGCACATGTTC
TTCTTCATTTTCACCAAATTCTTCAGAGTCCTTTAGTTCATCGTTTCCATCTTGTTCATG
TGCCTCTTGATTCTCCAATTCACAGTCCTTGACAAAAGCATCATCTTCCACAGAAGCATC
TCCACTCAACTCATCTGCTTCCTGTTTTTTACCTTTGCCTTTGGTTGGTTTCTTGTTTGG
AGTATCAGTTGAAACAGTTAATTCAATATTATCTGGATCGCCTCCTTCCTCTTCAATAGC
CTGCTTGAGTCGGGAGACGAGCACAGTCTTGACTCCGGTGATATCCAAGTTCCGCCGCTT
CAGCTCGGACTTGAGATCGATGACCCGCAGATCGGTGATCTTTTTACCTTCTGCCTGACC
GGAGGCAGCCGAGGCTGCCACAGCACCGGTGGCGGCAGCCATTTTAGAAGAGCAGCGCGC
GGCCGAGGCAGCCAGTGGGCTGCAGGGCGGCGGCAGCAGCTCCAACTTCGACCCAGGCCT
CGCCGGCAGCCGGCGCCGCGCAGCGCTGCGCACAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCGAATTAGCTTCCATCTCTTCATGAGCTGTGTGATCAGCCTCAGCTAGGTTCCCTTC
TGAAGGAAGAGGTTTAGATACTTCTTGTGTACCATCACCAGAACCTGCTATATCTTTCTC
ATTTTCTTCTTCCTCACCATCTTGGGCTGTTAGAAAGGTATCATCTTCACCTTCTTGAGC
TTCAATTTCCTGACTTTCGATGTCCTCTTTCTCTATATCTTCTATTGCTTCTGCCTCTAT
TAATTCATGAGCTCTCTTGTTCTCTTCTGCAGAAAGTAACTCCTTGGAATGCACATGTTC
TTCTTCATTTTCACCAAATTCTTCAGAGTCCTTTAGTTCATCGTTTCCATCTTGTTCATG
TGCCTCTTGATTCTCCAATTCACAGTCCTTGACAAAAGCATCATCTTCCACAGAAGCATC
TCCACTCAACTCATCTGCTTCCTGTTTTTTACCTTTGCCTTTGGTTGGTTTCTTGTTTGG
AGTATCAGTTGAAACAGTTAATTCAATATTATCTGGATCGCCTCCTTCCTCTTCAATAGC
CTGCTTGAGTCGGGAGACGAGCACAGTCTTGACTCCGGTGATATCCAAGTTCCGCCGCTT
CAGCTCGGACTTGAGATCGATGACCCGCAGATCGGTGATCTTTTTACCTTCTGCCTGACC
GGAGGCAGCCGAGGCTGCCACAGCACCGGTGGCGGCAGCCATTTTAGAAGAGCAGCGCGC
GGCCGAGGCAGCCAGTGGGCTGCAGGGCGGCGGCAGCAGCTCCAACTTCGACCCAGGCCT
CGCCGGCAGCCGGCGCCGCGCAGCGCTGCGCACAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55642207|ref|XP_510445.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55642207|ref|XP_510445.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               659-761, + strand, RNAz p=0.574572

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               659-761, + strand, RNAz p=0.574572

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-115, gnl|bosTau2|chr28 (31544134-31544248)
               

               
               1-115, gnl|Hg17|chr15 (56979316-56979430)
               

               
               1-115, gnl|Mm7|chr9 (70605519-70605405)
               


               
               540-816, gnl|bosTau2|chr28 (31569491-31569767)
               

               
               540-816, gnl|Hg17|chr15 (57012894-57013170)
               

               
               540-816, gnl|Mm7|chr9 (70575032-70574712)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-115, gnl|bosTau2|chr28 (31544134-31544248)
               

               
               1-115, gnl|Hg17|chr15 (56979316-56979430)
               

               
               1-115, gnl|Mm7|chr9 (70605519-70605405)
               


               
               540-816, gnl|bosTau2|chr28 (31569491-31569767)
               

               
               540-816, gnl|Hg17|chr15 (57012894-57013170)
               

               
               540-816, gnl|Mm7|chr9 (70575032-70574712)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.194005)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)

	1-115, gnl\|bosTau2\|chr28 (31544134-31544248)
	1-115, gnl\|Hg17\|chr15 (56979316-56979430)
	1-115, gnl\|Mm7\|chr9 (70605519-70605405)

	540-816, gnl\|bosTau2\|chr28 (31569491-31569767)
	540-816, gnl\|Hg17\|chr15 (57012894-57013170)
	540-816, gnl\|Mm7\|chr9 (70575032-70574712)