Ss1.1-Tra1-TCH01F110103.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCTTTGGGCGTACGTCAAGATGGCTGCCTCCATATTGAACGTGTTGCTGAGGCGCCTT CCTGGCGTTTCGCCCTTCAGAGGTGCCTACGGAGTTCAGGTTCTCCTCCAGACTCTTTGC ACCAAAGCTCCCCCTGAGGATGATTCTTTGCCCCAGGTTCCCATTTCCCCTTATAAAGAT GAACCCTGGAAATATCTGGACTCAGAAGAATACCAGAACCGCTATGGTTCTCGCCCTGTC TGGGCTGACTACCGTCGCAACCACAAAGGTGGAATACCCCCACAGCGGACTCGAAAGATG TGTATTCGGGGAAATAAAGTTGCTGGGAATCCCTGCCCCATCTGCCGGGATCAGAAGTTG CACGTCGACTTTAGGAACGTGAAGCTCTTGGAGCAGTTTGTCTGCGCCCACACGGGTATC ATCTTCCATGCCCCGTACACAGGGGTCTGTATGAAGCAACACAAGAAGTTGACCCAGGCC ATCCAGAAAGCCAGGGATCATGGTCTTCTCAGGTACCACATTCCCCAGGTTGAACCCCGG GACCTTGACTTCAGTACCACTCATGGAGCTGTGAGTTCTACTCCGCCAGCCCCCACTCTG GTTTCAGGTGACCCCTGGTACCCATGGTACAGCTGGAAACAGCCACCAGAGAGAGAGCTG TCCCGCCTTCGCCGGCTCTATCAGGGCCGTCTTCGAGAAGAAAGTGGCCCTCCACCTGAG TTAATGCCCGAGGTGCCCCTTACAGCCCCAGCTGAAGCCTCCTCCACTGAGCCTGGGGCC CCGCAAAGTGCTCTGTAGGAGCTGGAGACCGGGGAGGGAGACAGGGTGTCCCTTATACAA TATTTCACCCTGAGGAGCTGTGTCTCTTGTGGCAGTGGCAGGCCCAGGGCCAAAGAAAGG AAGCGGCTTTTGGTGAAAGGGATAAATACGTCTGAGGCTGGGGGAGGGCACTGCAGATGT GTATGAGAAAACCCAGCCTTTACATATTGTAAATAGATGTGCTAAGCATTCTGTTACTGT TTCAAACCTGTGCCAACTGGGCTTTTACAAAATAAAGCTGTATCCTGTCAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCTTTGGGCGTACGTCAAGATGGCTGCCTCCATATTGAACGTGTTGCTGAGGCGCCTT CCTGGCGTTTCGCCCTTCAGAGGTGCCTACGGAGTTCAGGTTCTCCTCCAGACTCTTTGC ACCAAAGCTCCCCCTGAGGATGATTCTTTGCCCCAGGTTCCCATTTCCCCTTATAAAGAT GAACCCTGGAAATATCTGGACTCAGAAGAATACCAGAACCGCTATGGTTCTCGCCCTGTC TGGGCTGACTACCGTCGCAACCACAAAGGTGGAATACCCCCACAGCGGACTCGAAAGATG TGTATTCGGGGAAATAAAGTTGCTGGGAATCCCTGCCCCATCTGCCGGGATCAGAAGTTG CACGTCGACTTTAGGAACGTGAAGCTCTTGGAGCAGTTTGTCTGCGCCCACACGGGTATC ATCTTCCATGCCCCGTACACAGGGGTCTGTATGAAGCAACACAAGAAGTTGACCCAGGCC ATCCAGAAAGCCAGGGATCATGGTCTTCTCAGGTACCACATTCCCCAGGTTGAACCCCGG GACCTTGACTTCAGTACCACTCATGGAGCTGTGAGTTCTACTCCGCCAGCCCCCACTCTG GTTTCAGGTGACCCCTGGTACCCATGGTACAGCTGGAAACAGCCACCAGAGAGAGAGCTG TCCCGCCTTCGCCGGCTCTATCAGGGCCGTCTTCGAGAAGAAAGTGGCCCTCCACCTGAG TTAATGCCCGAGGTGCCCCTTACAGCCCCAGCTGAAGCCTCCTCCACTGAGCCTGGGGCC CCGCAAAGTGCTCTGTAGGAGCTGGAGACCGGGGAGGGAGACAGGGTGTCCCTTATACAA TATTTCACCCTGAGGAGCTGTGTCTCTTGTGGCAGTGGCAGGCCCAGGGCCAAAGAAAGG AAGCGGCTTTTGGTGAAAGGGATAAATACGTCTGAGGCTGGGGGAGGGCACTGCAGATGT GTATGAGAAAACCCAGCCTTTACATATTGTAAATAGATGTGCTAAGCATTCTGTTACTGT TTCAAACCTGTGCCAACTGGGCTTTTACAAAATAAAGCTGTATCCTGTCAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 98-700, - strand, RNAz p=0.870577 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 98-700, - strand, RNAz p=0.870577 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 98-208, gnl|bosTau2|chr23 (20873272-20873162) | |
| 98-208, gnl|canFam2|chr12 (3437715-3437823) | |
| 98-208, gnl|canFam2|chr12 (3437628-3437824) | |
| 98-208, gnl|dasNov1|scaffold_82003 (5559-5451) | |
| 98-208, gnl|dasNov1|scaffold_82003 (5635-5450) | |
| 98-208, gnl|echTel1|scaffold_315780 (42149-42257) | |
| 98-208, gnl|echTel1|scaffold_315780 (42079-42258) | |
| 98-208, gnl|hg17|chr2 (140259912-140260019) | |
| 98-208, gnl|hg17|chr6 (30695169-30695357) | |
| 98-208, gnl|Hg17|chr6 (30695247-30695356) | |
| 98-208, gnl|loxAfr1|scaffold_14465 (36279-36171) | |
| 98-208, gnl|loxAfr1|scaffold_14465 (36355-36170) | |
| 98-208, gnl|mm7|chr17 (34018981-34018873) | |
| 98-208, gnl|mm7|chr17 (34019039-34018872) | |
| 98-208, gnl|Mm7|chr17 (34018980-34018870) | |
| 98-208, gnl|monDom2|scaffold_42 (18693807-18693705) | |
| 98-208, gnl|monDom2|scaffold_42 (18693935-18693704) | |
| 98-208, gnl|oryCun1|scaffold_204107 (72637-72745) | |
| 98-208, gnl|oryCun1|scaffold_204107 (72559-72746) | |
| 98-208, gnl|panTro1|chr13_random (12042380-12042487) | |
| 98-208, gnl|panTro1|chr5 (31153285-31153473) | |
| 98-208, gnl|rheMac2|chr1 (154224927-154225035) | |
| 98-208, gnl|rheMac2|chr4 (30198155-30198345) | |
| 98-208, gnl|rn3|chr18 (5940737-5940845) | |
| 98-208, gnl|rn3|chr20 (2987405-2987587) | |
| 502-1069, gnl|bosTau2|chr23 (20869003-20868443) | |
| 502-1069, gnl|Hg17|chr6 (30701257-30702141) | |
| 502-1069, gnl|Mm7|chr17 (34015131-34014543) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-208, gnl|bosTau2|chr23 (20873272-20873162) | |
| 98-208, gnl|canFam2|chr12 (3437715-3437823) | |
| 98-208, gnl|canFam2|chr12 (3437628-3437824) | |
| 98-208, gnl|dasNov1|scaffold_82003 (5559-5451) | |
| 98-208, gnl|dasNov1|scaffold_82003 (5635-5450) | |
| 98-208, gnl|echTel1|scaffold_315780 (42149-42257) | |
| 98-208, gnl|echTel1|scaffold_315780 (42079-42258) | |
| 98-208, gnl|hg17|chr2 (140259912-140260019) | |
| 98-208, gnl|hg17|chr6 (30695169-30695357) | |
| 98-208, gnl|Hg17|chr6 (30695247-30695356) | |
| 98-208, gnl|loxAfr1|scaffold_14465 (36279-36171) | |
| 98-208, gnl|loxAfr1|scaffold_14465 (36355-36170) | |
| 98-208, gnl|mm7|chr17 (34018981-34018873) | |
| 98-208, gnl|mm7|chr17 (34019039-34018872) | |
| 98-208, gnl|Mm7|chr17 (34018980-34018870) | |
| 98-208, gnl|monDom2|scaffold_42 (18693807-18693705) | |
| 98-208, gnl|monDom2|scaffold_42 (18693935-18693704) | |
| 98-208, gnl|oryCun1|scaffold_204107 (72637-72745) | |
| 98-208, gnl|oryCun1|scaffold_204107 (72559-72746) | |
| 98-208, gnl|panTro1|chr13_random (12042380-12042487) | |
| 98-208, gnl|panTro1|chr5 (31153285-31153473) | |
| 98-208, gnl|rheMac2|chr1 (154224927-154225035) | |
| 98-208, gnl|rheMac2|chr4 (30198155-30198345) | |
| 98-208, gnl|rn3|chr18 (5940737-5940845) | |
| 98-208, gnl|rn3|chr20 (2987405-2987587) | |
| 502-1069, gnl|bosTau2|chr23 (20869003-20868443) | |
| 502-1069, gnl|Hg17|chr6 (30701257-30702141) | |
| 502-1069, gnl|Mm7|chr17 (34015131-34014543) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| ssp (0.677599) | |
| col (0.585023) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| cli (0.305623) | |
| cag (0.302389) | |
| hea (0.204499) | |
| eje (0.197668) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| nje (0.16592) | |
| csp (0.161186) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| thg (0.126791) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.677599) | |
| col (0.585023) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| cli (0.305623) | |
| cag (0.302389) | |
| hea (0.204499) | |
| eje (0.197668) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| nje (0.16592) | |
| csp (0.161186) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| thg (0.126791) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) |