Non-Coding RNA Search

Ss1.1-Tra1-TCH01F120003.5

Sequence:


               
               AAAAATGCAAAGAGAACCTGCAAAGCCCGCTCTCCTGCCTGACTCCTTTCTAGCCAACTC
AGAACGCCTGAGGACAGGCAGCCTCTGAGCTTCCTTAGGGGCCAGCAGAAGCCTGCCAAG
GAGCTCAGACTTCACTGCTCATTGGGTCCAATCCTCGCACACAGGGGGTGGGATAAAGGG
AAGAAGGACCCAGGCACGGACGCCAGGGATCGCTCTCCCAGCTGGAGCAGACTCCCCTCC
TCCCAGTTGCAGCATGACTCTGTGGAACGGCGTGCTGCCCTTCTACCCTCAGCCTCGGTA
TGCCGCCAGCTTCAGCGTCCCACTACTCATCGTTATTCTGGTGTTCTTGGCCTTAGCCAC
CAGCTTTCTACTCATCTTGCCCGGGATTCGTGGCCACTCGCGCTGGTTCTGGTTGGTGAG
AGTTCTCCTCAGCCTGTTCATAGGCGCAGAAATTGTGGCGGTGCACTTCAGCGCAGAATG
GACCGTGGGCGAAGTTAGCAGCAATACATCTTACAAGGCCTTCAGTGTGGCACGTGTCCA
AGCCCACCTCGGTCTGCACGTGGGCCTGGAGGGTGTGAATATCACACTCACAGGGAATCC
GGTACAGCAGCTGAATGAGACCATCGACTACAACGAGCAGTTCATCTGGCGTATGGGCGA
AAACTATGCGGCGGCGTATGCGAAGGCTCTGGAGAAGGGGCTGCCGGACCCAGTTCTCTA
CTTGGCGGAGAAGTTCACTCCCAGAAGCCCCTGCGGGGTTTACCGCCAATATCGCCTAGC
CGGACACTACGCCTCCGCCACATTGTGGACGGCGTTCTGCTTCTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATGCAAAGAGAACCTGCAAAGCCCGCTCTCCTGCCTGACTCCTTTCTAGCCAACTC
AGAACGCCTGAGGACAGGCAGCCTCTGAGCTTCCTTAGGGGCCAGCAGAAGCCTGCCAAG
GAGCTCAGACTTCACTGCTCATTGGGTCCAATCCTCGCACACAGGGGGTGGGATAAAGGG
AAGAAGGACCCAGGCACGGACGCCAGGGATCGCTCTCCCAGCTGGAGCAGACTCCCCTCC
TCCCAGTTGCAGCATGACTCTGTGGAACGGCGTGCTGCCCTTCTACCCTCAGCCTCGGTA
TGCCGCCAGCTTCAGCGTCCCACTACTCATCGTTATTCTGGTGTTCTTGGCCTTAGCCAC
CAGCTTTCTACTCATCTTGCCCGGGATTCGTGGCCACTCGCGCTGGTTCTGGTTGGTGAG
AGTTCTCCTCAGCCTGTTCATAGGCGCAGAAATTGTGGCGGTGCACTTCAGCGCAGAATG
GACCGTGGGCGAAGTTAGCAGCAATACATCTTACAAGGCCTTCAGTGTGGCACGTGTCCA
AGCCCACCTCGGTCTGCACGTGGGCCTGGAGGGTGTGAATATCACACTCACAGGGAATCC
GGTACAGCAGCTGAATGAGACCATCGACTACAACGAGCAGTTCATCTGGCGTATGGGCGA
AAACTATGCGGCGGCGTATGCGAAGGCTCTGGAGAAGGGGCTGCCGGACCCAGTTCTCTA
CTTGGCGGAGAAGTTCACTCCCAGAAGCCCCTGCGGGGTTTACCGCCAATATCGCCTAGC
CGGACACTACGCCTCCGCCACATTGTGGACGGCGTTCTGCTTCTGGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|62645690|ref|XP_575222.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|62645690|ref|XP_575222.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               3-400, gnl|bosTau2|chr10 (45063371-45062980)
               

               
               3-400, gnl|Hg17|chr15 (43193810-43194242)
               


               
               591-808, gnl|bosTau2|chr10 (45061180-45060963)
               

               
               591-808, gnl|Hg17|chr15 (43196003-43196220)
               

               
               591-808, gnl|Mm7|chr2 (122042022-122042239)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-400, gnl|bosTau2|chr10 (45063371-45062980)
               

               
               3-400, gnl|Hg17|chr15 (43193810-43194242)
               


               
               591-808, gnl|bosTau2|chr10 (45061180-45060963)
               

               
               591-808, gnl|Hg17|chr15 (43196003-43196220)
               

               
               591-808, gnl|Mm7|chr2 (122042022-122042239)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	3-400, gnl\|bosTau2\|chr10 (45063371-45062980)
	3-400, gnl\|Hg17\|chr15 (43193810-43194242)

	591-808, gnl\|bosTau2\|chr10 (45061180-45060963)
	591-808, gnl\|Hg17\|chr15 (43196003-43196220)
	591-808, gnl\|Mm7\|chr2 (122042022-122042239)