Ss1.1-Tra1-TCH01F120009.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCTAAAGGCAGCTTTGACTGCGTGGGGGTATTTCCAGCTTTGTGGCTTTCACTTCCAC TTCTCCCAGGTGGGCGGAGTGGCCTCCTGTGGACGAATCAGATTGCTCCTCCGCCCCAAC TTCAGGAGGCGAGCCCGGGGCTTGGGGTCCCAGACGTGCCGCCGCCGCCGCCACAGCAGC ATCCGCAGCAGCAGCAGCAGCAGGACGACTAGGAAAGACCCCAGGCCAGAACCATGGAGG ACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCATGCTGGGCCAGCGCCCCGGGG CCCCCGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAGGCTTTTCTGTCCTGGTGGCTC TGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAGGGCCGGCTGG ACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGAGCCTGCGGATGAAGCTTCCCA AGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCCCCATGCTGATGCAGGCCCTGC CCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGTACGGCAACATGACCCAGGACC ACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAGTGTACCCGAAGCTGAAGGGGA GCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGGACGGTGTGAACTGGAAGCTCT TTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGAGCAAGAACTCGCTGGAGGAGA CACCCTTTGAGGTTCCGCCAAAAGACCCACTGGAGACGGAGGACCTGTCGTCCGGGCTGG GCGTGACCAAGCAGGATCTCGGCCAAGTCATCCTGTAAGAGCAGCAGACGCCAGCCCCCA GCCCTGCGTGGCCACAGCTTGCCTGCCCCCCACCCTCCCTGCCGCCCCCACCTGCACCTC ATCCCATGGGCCTCTGGCACCTGGCTCGCCGTCCTCCCTGGACACCTCACGTCTCTTCAG AAGGCCAAGGATGAACGACACAGGGAGGCCCTGCTGCCCACAGCTCCATCCGCTAGCAGG GACACAGGGCCCCGGGGACAGCCCGTGAGCGGGGCTGGTGCCACTCCTGACACCTTGAGC TCCAACATGGCGGCTGTCCATGGATGAGGCGGGCAGGTGCCTGGGGACGGGTCCGCTCGA TCCCAAACCCCCACAAGGACAGCTTTGCTGTCTCCTCCCCTGGTGGCCTCAGCTTCGCTG CCCGTTACCTGGGGAGACGGGCCAAGCCTTTGTGTGTCCCCAGCATCAGCCACCCACGGC CCCTCCTCACCCCCTGCCCGCCCCACATCCCTGTGCACAGTCAGGCTCGGCTCAGCCCCC GGCCACGGCTTCTGTGAGAATAAAAGGTAGTGAGTAGGAAAAAAAAAACCCCTGGTGGCC TCAGCTTCGCTGCCCGTTACCTGGGGAGACGGGCCAAGCCTTTGTGTGTCCCCAGCATCA GCCACCCACGGCCCCTCCTCACCCCCTGCCCGCCCCACATCCCTGTGCACAGTCAGGCTC GGCTCAGCCCCTGGCCACGGCTTCTGTGAGAATAAAAGGTAGTGAGTAGGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCTAAAGGCAGCTTTGACTGCGTGGGGGTATTTCCAGCTTTGTGGCTTTCACTTCCAC TTCTCCCAGGTGGGCGGAGTGGCCTCCTGTGGACGAATCAGATTGCTCCTCCGCCCCAAC TTCAGGAGGCGAGCCCGGGGCTTGGGGTCCCAGACGTGCCGCCGCCGCCGCCACAGCAGC ATCCGCAGCAGCAGCAGCAGCAGGACGACTAGGAAAGACCCCAGGCCAGAACCATGGAGG ACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCATGCTGGGCCAGCGCCCCGGGG CCCCCGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAGGCTTTTCTGTCCTGGTGGCTC TGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAGGGCCGGCTGG ACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGAGCCTGCGGATGAAGCTTCCCA AGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCCCCATGCTGATGCAGGCCCTGC CCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGTACGGCAACATGACCCAGGACC ACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAGTGTACCCGAAGCTGAAGGGGA GCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGGACGGTGTGAACTGGAAGCTCT TTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGAGCAAGAACTCGCTGGAGGAGA CACCCTTTGAGGTTCCGCCAAAAGACCCACTGGAGACGGAGGACCTGTCGTCCGGGCTGG GCGTGACCAAGCAGGATCTCGGCCAAGTCATCCTGTAAGAGCAGCAGACGCCAGCCCCCA GCCCTGCGTGGCCACAGCTTGCCTGCCCCCCACCCTCCCTGCCGCCCCCACCTGCACCTC ATCCCATGGGCCTCTGGCACCTGGCTCGCCGTCCTCCCTGGACACCTCACGTCTCTTCAG AAGGCCAAGGATGAACGACACAGGGAGGCCCTGCTGCCCACAGCTCCATCCGCTAGCAGG GACACAGGGCCCCGGGGACAGCCCGTGAGCGGGGCTGGTGCCACTCCTGACACCTTGAGC TCCAACATGGCGGCTGTCCATGGATGAGGCGGGCAGGTGCCTGGGGACGGGTCCGCTCGA TCCCAAACCCCCACAAGGACAGCTTTGCTGTCTCCTCCCCTGGTGGCCTCAGCTTCGCTG CCCGTTACCTGGGGAGACGGGCCAAGCCTTTGTGTGTCCCCAGCATCAGCCACCCACGGC CCCTCCTCACCCCCTGCCCGCCCCACATCCCTGTGCACAGTCAGGCTCGGCTCAGCCCCC GGCCACGGCTTCTGTGAGAATAAAAGGTAGTGAGTAGGAAAAAAAAAACCCCTGGTGGCC TCAGCTTCGCTGCCCGTTACCTGGGGAGACGGGCCAAGCCTTTGTGTGTCCCCAGCATCA GCCACCCACGGCCCCTCCTCACCCCCTGCCCGCCCCACATCCCTGTGCACAGTCAGGCTC GGCTCAGCCCCTGGCCACGGCTTCTGTGAGAATAAAAGGTAGTGAGTAGGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 341-460, - strand, RNAz p=0.955497 | |
| 378-483, - strand, RNAz p=0.604091 | |
| 1199-1295, - strand, RNAz p=0.781292 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 341-460, - strand, RNAz p=0.955497 | |
| 378-483, - strand, RNAz p=0.604091 | |
| 1199-1295, - strand, RNAz p=0.781292 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of K01144, - |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 5-179, gnl|bosTau2|chr7 (38992447-38992273) | |
| 5-179, gnl|canFam2|chr4 (61893313-61893073) | |
| 5-179, gnl|dasNov1|scaffold_8563 (104054-104272) | |
| 5-179, gnl|echTel1|scaffold_308775 (230-15) | |
| 5-179, gnl|hg17|chr5 (149772483-149772703) | |
| 5-179, gnl|Hg17|chr5 (149772654-149772483) | |
| 5-179, gnl|mm7|chr18 (61193314-61193101) | |
| 5-179, gnl|Mm7|chr18 (61193143-61193321) | |
| 5-179, gnl|monDom2|scaffold_6 (56693444-56693200) | |
| 5-179, gnl|panTro1|chr4 (156696141-156696364) | |
| 5-179, gnl|rheMac2|chr6 (146887950-146888170) | |
| 5-179, gnl|rn3|chr18 (56828786-56828572) | |
| 301-483, gnl|bosTau2|chr7 (38989502-38989320) | |
| 301-483, gnl|canFam2|chr4 (61897153-61896903) | |
| 301-483, gnl|dasNov1|scaffold_8563 (100450-100709) | |
| 301-483, gnl|echTel1|scaffold_296504 (19773-20021) | |
| 301-483, gnl|hg17|chr5 (149766901-149767154) | |
| 301-483, gnl|Hg17|chr5 (149767086-149766908) | |
| 301-483, gnl|loxAfr1|scaffold_29183 (34258-34509) | |
| 301-483, gnl|mm7|chr18 (61197525-61197297) | |
| 301-483, gnl|Mm7|chr18 (61197335-61197516) | |
| 301-483, gnl|monDom2|scaffold_6 (56700679-56700421) | |
| 301-483, gnl|oryCun1|scaffold_198701 (58608-58860) | |
| 301-483, gnl|panTro1|chr4 (156690580-156690833) | |
| 301-483, gnl|rheMac2|chr6 (146882516-146882767) | |
| 301-483, gnl|rn3|chr18 (56833680-56833449) | |
| 615-719, gnl|bosTau2|chr7 (38987683-38987579) | |
| 615-719, gnl|canFam2|chr4 (61898859-61898626) | |
| 615-719, gnl|dasNov1|scaffold_8563 (98578-98809) | |
| 615-719, gnl|echTel1|scaffold_308775 (6018-5838) | |
| 615-719, gnl|hg17|chr5 (149764742-149764977) | |
| 615-719, gnl|Hg17|chr5 (149764942-149764838) | |
| 615-719, gnl|mm7|chr18 (61199605-61199383) | |
| 615-719, gnl|Mm7|chr18 (61199415-61199516) | |
| 615-719, gnl|monDom2|scaffold_6 (56702599-56702374) | |
| 615-719, gnl|oryCun1|scaffold_139619 (729-516) | |
| 615-719, gnl|panTro1|chr4 (156688417-156688652) | |
| 615-719, gnl|rheMac2|chr6 (146880356-146880587) | |
| 615-719, gnl|rn3|chr18 (56835477-56835262) | |
| 927-1316, gnl|bosTau2|chr7 (38985118-38984742) | |
| 927-1316, gnl|canFam2|chr4 (61901943-61901438) | |
| 927-1316, gnl|hg17|chr5 (149761261-149761823) | |
| 927-1316, gnl|Hg17|chr5 (149761922-149761518) | |
| 927-1316, gnl|loxAfr1|scaffold_216515 (278-850) | |
| 927-1316, gnl|mm7|chr18 (61202182-61201771) | |
| 927-1316, gnl|Mm7|chr18 (61201679-61201985) | |
| 927-1316, gnl|oryCun1|scaffold_198701 (54293-54753) | |
| 927-1316, gnl|panTro1|chr4 (156684943-156685505) | |
| 927-1316, gnl|rheMac2|chr6 (146877031-146877562) | |
| 927-1316, gnl|rn3|chr18 (56838036-56837650) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-179, gnl|bosTau2|chr7 (38992447-38992273) | |
| 5-179, gnl|canFam2|chr4 (61893313-61893073) | |
| 5-179, gnl|dasNov1|scaffold_8563 (104054-104272) | |
| 5-179, gnl|echTel1|scaffold_308775 (230-15) | |
| 5-179, gnl|hg17|chr5 (149772483-149772703) | |
| 5-179, gnl|Hg17|chr5 (149772654-149772483) | |
| 5-179, gnl|mm7|chr18 (61193314-61193101) | |
| 5-179, gnl|Mm7|chr18 (61193143-61193321) | |
| 5-179, gnl|monDom2|scaffold_6 (56693444-56693200) | |
| 5-179, gnl|panTro1|chr4 (156696141-156696364) | |
| 5-179, gnl|rheMac2|chr6 (146887950-146888170) | |
| 5-179, gnl|rn3|chr18 (56828786-56828572) | |
| 301-483, gnl|bosTau2|chr7 (38989502-38989320) | |
| 301-483, gnl|canFam2|chr4 (61897153-61896903) | |
| 301-483, gnl|dasNov1|scaffold_8563 (100450-100709) | |
| 301-483, gnl|echTel1|scaffold_296504 (19773-20021) | |
| 301-483, gnl|hg17|chr5 (149766901-149767154) | |
| 301-483, gnl|Hg17|chr5 (149767086-149766908) | |
| 301-483, gnl|loxAfr1|scaffold_29183 (34258-34509) | |
| 301-483, gnl|mm7|chr18 (61197525-61197297) | |
| 301-483, gnl|Mm7|chr18 (61197335-61197516) | |
| 301-483, gnl|monDom2|scaffold_6 (56700679-56700421) | |
| 301-483, gnl|oryCun1|scaffold_198701 (58608-58860) | |
| 301-483, gnl|panTro1|chr4 (156690580-156690833) | |
| 301-483, gnl|rheMac2|chr6 (146882516-146882767) | |
| 301-483, gnl|rn3|chr18 (56833680-56833449) | |
| 615-719, gnl|bosTau2|chr7 (38987683-38987579) | |
| 615-719, gnl|canFam2|chr4 (61898859-61898626) | |
| 615-719, gnl|dasNov1|scaffold_8563 (98578-98809) | |
| 615-719, gnl|echTel1|scaffold_308775 (6018-5838) | |
| 615-719, gnl|hg17|chr5 (149764742-149764977) | |
| 615-719, gnl|Hg17|chr5 (149764942-149764838) | |
| 615-719, gnl|mm7|chr18 (61199605-61199383) | |
| 615-719, gnl|Mm7|chr18 (61199415-61199516) | |
| 615-719, gnl|monDom2|scaffold_6 (56702599-56702374) | |
| 615-719, gnl|oryCun1|scaffold_139619 (729-516) | |
| 615-719, gnl|panTro1|chr4 (156688417-156688652) | |
| 615-719, gnl|rheMac2|chr6 (146880356-146880587) | |
| 615-719, gnl|rn3|chr18 (56835477-56835262) | |
| 927-1316, gnl|bosTau2|chr7 (38985118-38984742) | |
| 927-1316, gnl|canFam2|chr4 (61901943-61901438) | |
| 927-1316, gnl|hg17|chr5 (149761261-149761823) | |
| 927-1316, gnl|Hg17|chr5 (149761922-149761518) | |
| 927-1316, gnl|loxAfr1|scaffold_216515 (278-850) | |
| 927-1316, gnl|mm7|chr18 (61202182-61201771) | |
| 927-1316, gnl|Mm7|chr18 (61201679-61201985) | |
| 927-1316, gnl|oryCun1|scaffold_198701 (54293-54753) | |
| 927-1316, gnl|panTro1|chr4 (156684943-156685505) | |
| 927-1316, gnl|rheMac2|chr6 (146877031-146877562) | |
| 927-1316, gnl|rn3|chr18 (56838036-56837650) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| clu (7.0591) | |
| csp (6.60864) | |
| lnt (5.1231) | |
| cly (4.82567) | |
| cag (4.38464) | |
| ill (4.03863) | |
| cty (2.18568) | |
| med (1.51128) | |
| jej (0.989218) | |
| mas (0.84122) | |
| cov (0.792917) | |
| col (0.780031) | |
| nco (0.646935) | |
| jca (0.569801) | |
| ute (0.531138) | |
| cli (0.458435) | |
| nlu (0.383362) | |
| fty (0.351679) | |
| duo (0.345602) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| nms (0.213858) | |
| fli (0.202881) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| cki (0.165235) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (7.0591) | |
| csp (6.60864) | |
| lnt (5.1231) | |
| cly (4.82567) | |
| cag (4.38464) | |
| ill (4.03863) | |
| cty (2.18568) | |
| med (1.51128) | |
| jej (0.989218) | |
| mas (0.84122) | |
| cov (0.792917) | |
| col (0.780031) | |
| nco (0.646935) | |
| jca (0.569801) | |
| ute (0.531138) | |
| cli (0.458435) | |
| nlu (0.383362) | |
| fty (0.351679) | |
| duo (0.345602) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| nms (0.213858) | |
| fli (0.202881) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| cki (0.165235) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) |