Non-Coding RNA Search

Ss1.1-Tra1-TCH01F120046.5

Sequence:


               
               GGATGACATGGCTTACATGGAAGCCTACGACAGGCTGCTGGAGTCCTGGCTGACGCTGGT
CCAAGACGACGCGCACTTCCACAAGGGCTTCTTCACGCAGCACGCGGTTCAGGTTTTCAA
CTCCTATGTCCAGTGCCACCTCGCCGCTCCAGACGGCACGCGGAATTTGACCGCCAACGG
CGTGGCCTCCCGCGAGGAAGAAGAGATCAGCGAGCTGCAAGAGGACGATCGCGACCAGTT
CTCGGACCAGCTCGCCAGTGTGGGGATGCTCGGCCGGATCGCCGCAGAGCACTGCGTACC
TCTGCTGACAAGTTTGTTAGAAGAAAGAGTGACGAGGCTGCACGGGCAGTTGCAGCGGCA
GCAGCAGCAGCTCCTGGCCGCCCCCGCCTCGCGCTCCGTCGACAGCAAGACGCTGGATGA
TCTGTACGAAGATATCCACTGGCTGATTTTAGTTACAGGCTACCTCTTAGCTGATGATAC
TCAGGGAGAGACTCCACTAATACCTCCAGAAATAATGGAATATTCCATTAAGCATTCATC
TGAAGTTGACATTAACACAACCCTTCAAATTTTGGGATCTCCGGGAGAAAAGGCTTCCTC
CATCCCAGGGTACAACAGCACAGATTCTGTGATTAGGCTGTTTTCTGCGGTTCTGCGAGT
TTCGGAAGTTGAATCTCGAGCCGTGAGAGCGGCTCTCACTCACCTCCTGAGCCCTCAGAT
GGGCAAGGATATCGTTTGGTTTCTAAAGCGCTGGGCAAAGACTTACCTCCTGGTGGATGA
GAAACTGTACGATCAGATAAGCGTGCCCTTCAGTGCGGCCTTTGGGGCGGACACGGAGGG
CTCCCAGTGGGTGGTCGGCTACCTCCTGCAGAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGACATGGCTTACATGGAAGCCTACGACAGGCTGCTGGAGTCCTGGCTGACGCTGGT
CCAAGACGACGCGCACTTCCACAAGGGCTTCTTCACGCAGCACGCGGTTCAGGTTTTCAA
CTCCTATGTCCAGTGCCACCTCGCCGCTCCAGACGGCACGCGGAATTTGACCGCCAACGG
CGTGGCCTCCCGCGAGGAAGAAGAGATCAGCGAGCTGCAAGAGGACGATCGCGACCAGTT
CTCGGACCAGCTCGCCAGTGTGGGGATGCTCGGCCGGATCGCCGCAGAGCACTGCGTACC
TCTGCTGACAAGTTTGTTAGAAGAAAGAGTGACGAGGCTGCACGGGCAGTTGCAGCGGCA
GCAGCAGCAGCTCCTGGCCGCCCCCGCCTCGCGCTCCGTCGACAGCAAGACGCTGGATGA
TCTGTACGAAGATATCCACTGGCTGATTTTAGTTACAGGCTACCTCTTAGCTGATGATAC
TCAGGGAGAGACTCCACTAATACCTCCAGAAATAATGGAATATTCCATTAAGCATTCATC
TGAAGTTGACATTAACACAACCCTTCAAATTTTGGGATCTCCGGGAGAAAAGGCTTCCTC
CATCCCAGGGTACAACAGCACAGATTCTGTGATTAGGCTGTTTTCTGCGGTTCTGCGAGT
TTCGGAAGTTGAATCTCGAGCCGTGAGAGCGGCTCTCACTCACCTCCTGAGCCCTCAGAT
GGGCAAGGATATCGTTTGGTTTCTAAAGCGCTGGGCAAAGACTTACCTCCTGGTGGATGA
GAAACTGTACGATCAGATAAGCGTGCCCTTCAGTGCGGCCTTTGGGGCGGACACGGAGGG
CTCCCAGTGGGTGGTCGGCTACCTCCTGCAGAAAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               496-615, - strand, RNAz p=0.879091

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               496-615, - strand, RNAz p=0.879091

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               457-637, gnl|bosTau2|chr12 (19801997-19802177)
               

               
               457-637, gnl|canFam2|chr25 (20310960-20310744)
               

               
               457-637, gnl|danRer3|chr9 (14770337-14770130)
               

               
               457-637, gnl|dasNov1|scaffold_773 (59369-59153)
               

               
               457-637, gnl|echTel1|scaffold_306866 (1944-1728)
               

               
               457-637, gnl|fr1|chrUn (78389699-78389491)
               

               
               457-637, gnl|galGal2|chr1 (170735867-170735668)
               

               
               457-637, gnl|hg17|chr13 (20279574-20279790)
               

               
               457-637, gnl|Hg17|chr13 (20279775-20279595)
               

               
               457-637, gnl|loxAfr1|scaffold_14925 (36605-36822)
               

               
               457-637, gnl|mm7|chr14 (52470388-52470604)
               

               
               457-637, gnl|Mm7|chr14 (52470589-52470409)
               

               
               457-637, gnl|monDom2|scaffold_15 (28625050-28625266)
               

               
               457-637, gnl|oryCun1|scaffold_195813 (6207-6423)
               

               
               457-637, gnl|panTro1|chr14 (19249586-19249802)
               

               
               457-637, gnl|rheMac2|chr17 (798982-798766)
               

               
               457-637, gnl|rn3|chr15 (36651995-36652211)
               

               
               457-637, gnl|tetNig1|chr2 (17671285-17671071)
               

               
               457-637, gnl|xenTro1|scaffold_327 (1105997-1106205)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               457-637, gnl|bosTau2|chr12 (19801997-19802177)
               

               
               457-637, gnl|canFam2|chr25 (20310960-20310744)
               

               
               457-637, gnl|danRer3|chr9 (14770337-14770130)
               

               
               457-637, gnl|dasNov1|scaffold_773 (59369-59153)
               

               
               457-637, gnl|echTel1|scaffold_306866 (1944-1728)
               

               
               457-637, gnl|fr1|chrUn (78389699-78389491)
               

               
               457-637, gnl|galGal2|chr1 (170735867-170735668)
               

               
               457-637, gnl|hg17|chr13 (20279574-20279790)
               

               
               457-637, gnl|Hg17|chr13 (20279775-20279595)
               

               
               457-637, gnl|loxAfr1|scaffold_14925 (36605-36822)
               

               
               457-637, gnl|mm7|chr14 (52470388-52470604)
               

               
               457-637, gnl|Mm7|chr14 (52470589-52470409)
               

               
               457-637, gnl|monDom2|scaffold_15 (28625050-28625266)
               

               
               457-637, gnl|oryCun1|scaffold_195813 (6207-6423)
               

               
               457-637, gnl|panTro1|chr14 (19249586-19249802)
               

               
               457-637, gnl|rheMac2|chr17 (798982-798766)
               

               
               457-637, gnl|rn3|chr15 (36651995-36652211)
               

               
               457-637, gnl|tetNig1|chr2 (17671285-17671071)
               

               
               457-637, gnl|xenTro1|scaffold_327 (1105997-1106205)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	457-637, gnl\|bosTau2\|chr12 (19801997-19802177)
	457-637, gnl\|canFam2\|chr25 (20310960-20310744)
	457-637, gnl\|danRer3\|chr9 (14770337-14770130)
	457-637, gnl\|dasNov1\|scaffold_773 (59369-59153)
	457-637, gnl\|echTel1\|scaffold_306866 (1944-1728)
	457-637, gnl\|fr1\|chrUn (78389699-78389491)
	457-637, gnl\|galGal2\|chr1 (170735867-170735668)
	457-637, gnl\|hg17\|chr13 (20279574-20279790)
	457-637, gnl\|Hg17\|chr13 (20279775-20279595)
	457-637, gnl\|loxAfr1\|scaffold_14925 (36605-36822)
	457-637, gnl\|mm7\|chr14 (52470388-52470604)
	457-637, gnl\|Mm7\|chr14 (52470589-52470409)
	457-637, gnl\|monDom2\|scaffold_15 (28625050-28625266)
	457-637, gnl\|oryCun1\|scaffold_195813 (6207-6423)
	457-637, gnl\|panTro1\|chr14 (19249586-19249802)
	457-637, gnl\|rheMac2\|chr17 (798982-798766)
	457-637, gnl\|rn3\|chr15 (36651995-36652211)
	457-637, gnl\|tetNig1\|chr2 (17671285-17671071)
	457-637, gnl\|xenTro1\|scaffold_327 (1105997-1106205)