Non-Coding RNA Search

Ss1.1-Tra1-TCH01F120059.5

Sequence:


               
               CAACGACTGCGTGATGATCAGCACCAGGCTGGTTTCTTCGGTGCAGGCTGTGTTGGCCAC
CGGGTCTGGGATCATCATCATCCGCTCCTGTAGCAACGTGGTCACCGACAGGCACTGGCT
GGCCCGCGAATACGTCTGGTTTTTGATTCCCTACATGGTCTACGACTCCTACGCCATGTA
CCTCTGTGAATGGTACCGAGCCGGGGACCAGAGCAGCAGACAGCCCCTCACCATTTTCCG
AAACTTCCTAAGTAAAAACCGCCTCATGATCACGCACCACGTGGTCATTCTGTGTGTCCT
GGTGCCGGTTGCACAGAGGCTCAGGGGAGAGCTGGGGGACTTCTTTGTCGGCTGCATCTT
CACAGCAGAACTGAGCACTCCATTCGTGTCGCTGGGCAGGGTTCTGATTCAGCTAAAGCA
GCAGCACACGCTGCTGTACAAGGTGAACGGAATCCTCACGCTGACCACCTTCTTCTTCTG
TCGGATCCTCCTTTTCCCCTTCATGTACTGGTCCTACGGGCAGCAGCAGGGGCTGAGCCT
GCTCCAAGTGCCGTCCAGGATTCCCTTCTACTGCAACGTGGCCAACGCCTTCCTGGTCGC
TCCCCAGATCTACTGGTTCTCTCTGCTGTGCAAGAAGGCAGCCCGGCTCTTCAGTGCTCC
CTCGGCCAAAAAGGATGGTTAGCTGTGAGTCAGGCAGGGTGGGCGCCTCCGCACACAGCT
GCCTCCATCCACTCAGTATGCCACGGACCACATTCCAAACGGTGCCCTGGGGGACCTCAG
CCTTTTGGGTATTGACAAGCAGATGGATCTGGGTTTTTCTAAAGAATATTCTTATTACCT
CCCTGTTCTAACCTGCCCCTTTTGCAAAAGCACTTTTTTTCTTAGTAACAACTATTGGAT
CCTGTCCGACTTCCACTGACAGTCAAGTGGCTTTAATGCCAGGCTGAGGACCCTTCCTTG
GGTCTTATCTCAAGGGCTCTGGGAGGCAGCAGCATGGGGTGTGATAGCTGGGCACCTGAC
GGTGGTGGCTCCAGACCTTTCCAACCACTCAGGGCAGTCCCACATCGACTGGGCCAGCAC
AAGCAGGCAGGGACTTGGTCCTTGAAATAATTCCTTGCGAGGCTGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGACTGCGTGATGATCAGCACCAGGCTGGTTTCTTCGGTGCAGGCTGTGTTGGCCAC
CGGGTCTGGGATCATCATCATCCGCTCCTGTAGCAACGTGGTCACCGACAGGCACTGGCT
GGCCCGCGAATACGTCTGGTTTTTGATTCCCTACATGGTCTACGACTCCTACGCCATGTA
CCTCTGTGAATGGTACCGAGCCGGGGACCAGAGCAGCAGACAGCCCCTCACCATTTTCCG
AAACTTCCTAAGTAAAAACCGCCTCATGATCACGCACCACGTGGTCATTCTGTGTGTCCT
GGTGCCGGTTGCACAGAGGCTCAGGGGAGAGCTGGGGGACTTCTTTGTCGGCTGCATCTT
CACAGCAGAACTGAGCACTCCATTCGTGTCGCTGGGCAGGGTTCTGATTCAGCTAAAGCA
GCAGCACACGCTGCTGTACAAGGTGAACGGAATCCTCACGCTGACCACCTTCTTCTTCTG
TCGGATCCTCCTTTTCCCCTTCATGTACTGGTCCTACGGGCAGCAGCAGGGGCTGAGCCT
GCTCCAAGTGCCGTCCAGGATTCCCTTCTACTGCAACGTGGCCAACGCCTTCCTGGTCGC
TCCCCAGATCTACTGGTTCTCTCTGCTGTGCAAGAAGGCAGCCCGGCTCTTCAGTGCTCC
CTCGGCCAAAAAGGATGGTTAGCTGTGAGTCAGGCAGGGTGGGCGCCTCCGCACACAGCT
GCCTCCATCCACTCAGTATGCCACGGACCACATTCCAAACGGTGCCCTGGGGGACCTCAG
CCTTTTGGGTATTGACAAGCAGATGGATCTGGGTTTTTCTAAAGAATATTCTTATTACCT
CCCTGTTCTAACCTGCCCCTTTTGCAAAAGCACTTTTTTTCTTAGTAACAACTATTGGAT
CCTGTCCGACTTCCACTGACAGTCAAGTGGCTTTAATGCCAGGCTGAGGACCCTTCCTTG
GGTCTTATCTCAAGGGCTCTGGGAGGCAGCAGCATGGGGTGTGATAGCTGGGCACCTGAC
GGTGGTGGCTCCAGACCTTTCCAACCACTCAGGGCAGTCCCACATCGACTGGGCCAGCAC
AAGCAGGCAGGGACTTGGTCCTTGAAATAATTCCTTGCGAGGCTGGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5GA92_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5GA92_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               879-1003, + strand, RNAz p=0.85943

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               879-1003, + strand, RNAz p=0.85943

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_024792, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_024792, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               109-316, gnl|bosTau2|chr19 (16556586-16556379)
               

               
               109-316, gnl|Hg17|chr17 (587833-588037)
               

               
               109-316, gnl|Mm7|chr11 (76286825-76287029)
               


               
               402-1003, gnl|bosTau2|chr19 (16553934-16553346)
               

               
               402-1003, gnl|Hg17|chr17 (591280-591863)
               

               
               402-1003, gnl|Mm7|chr11 (76289473-76290037)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-316, gnl|bosTau2|chr19 (16556586-16556379)
               

               
               109-316, gnl|Hg17|chr17 (587833-588037)
               

               
               109-316, gnl|Mm7|chr11 (76286825-76287029)
               


               
               402-1003, gnl|bosTau2|chr19 (16553934-16553346)
               

               
               402-1003, gnl|Hg17|chr17 (591280-591863)
               

               
               402-1003, gnl|Mm7|chr11 (76289473-76290037)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.415628)
               

               
               nco (0.161734)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               nco (0.161734)
               

               
               nmm (0.132802)

	109-316, gnl\|bosTau2\|chr19 (16556586-16556379)
	109-316, gnl\|Hg17\|chr17 (587833-588037)
	109-316, gnl\|Mm7\|chr11 (76286825-76287029)

	402-1003, gnl\|bosTau2\|chr19 (16553934-16553346)
	402-1003, gnl\|Hg17\|chr17 (591280-591863)
	402-1003, gnl\|Mm7\|chr11 (76289473-76290037)