Ss1.1-Tra1-TCH01F120081.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGGAGGGCCGGGAGGCGGCGCCGCACAGGACGGAGCGGAAGTGCTCGGCTGCTCGTTC TAGGACCGAGAGAAGCGCCGGCGCGGCCGCCACCCGCGTCCTCCTTCCCGCGGCCCTCGG GAGACCGCGCTCGGCCGCAGCGGACCGCGAGAATGTCCGAAGGTGACAGCGTGGGAGACT CTGTCCATGGGAAGCCTTCCGTGGTGTACAGATTCTTCACACGGCTTGGGCAGATCTACC AGTCCTGGCTGGACAGGTCGACGCCATACACGGCCGTGCGATGGGTGGTGACGCTGGGCC TGAGCTTCGTCTACATGGTGCGCGTTTACCTGCTGCAGGGCTGGTACATCGTGACCTACG CCCTGGGGATCTACCACCTGAATCTCTTCATAGCTTTCCTCTCCCCCAAAGTGGACCCTT CCCTGATGGAAGACTCAGATGACGGCCCCTCGTTGCCGACCAAACAGAACGAGGAGTTCC GGCCCTTCATTCGAAGGCTCCCGGAGTTCAAATTTTGGCACGCAGCGACCAAGGGCGTCC TCGTGGCCATGGTCTGCACCTTCTTCGAGGCCTTCAACGTCCCGGTGTTCTGGCCCATCC TGGTCATGTACTTCGTCATGCTCTTCTGCATCACCATGAAGAGGCAGATAAAGCACATGA TCAAGTACCGGTACATCCCGTTCACGCACGGCAAGAGGACGTACAGGGGCAAGGAGGACT CGGCCAAGACGCTCACCAGCTAGACCGCCCCGCTGCGCCGCCTGCGCGTACAGTAGTTGA TCACGGGAGTTGTTTTCTTTTTAAAAAGGAGCTTCAATTATTTGTAACTGAAATATCAGG TTCTTGAAGAAACTGGCATTTAAACTGAATCGCATTGATTTATTTTTCAGGGCCATTAGG CGACCAGGCAGGGTGGCCGGGGGGCAGGGCGGGGAGGGCAGGTGGCACCCTGATGCCCAG CGCCAGGGACGCCACCCGTGACCCCATCGCCCGCCTGGAGGAAGCTCACCGGTTCCTGCG TGTGAAGGAGACCCGGGGGGACCCCGGGCTCGAGTGCCAGTCTCCCAGTTTCATCTCAGT AGAGATGTGTCGGGTCGGCCTCTTATCCTGATGACTCAAAACTGTGTTCTTAACTGCCGT GATTGCTTTTGAGGGCCTGAAATTATAAATATATATTATATTTTAATTGTTTGAGATTAT TTTGACACATTTCTTTGATACATGGAGAGTTTTGTTTTTAATTTAAATTTCTTCCCATGC AGCAGTCCCTTTTCAGAAACAGCTGGCAAGACTGCCCAGTCTCATGGGTTTTAACACCTG GCTTTTTCCACTTTCTATGGGGAAACAACTCTGATCTGCATGGCACCTTTTTTGATGTGA TAAAAACAAACACTCGTAAACATTTTACCAAATGACTTTTCAGTCCCAACTTTATTAAAG GTCGTGTTCCCGCAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGGAGGGCCGGGAGGCGGCGCCGCACAGGACGGAGCGGAAGTGCTCGGCTGCTCGTTC TAGGACCGAGAGAAGCGCCGGCGCGGCCGCCACCCGCGTCCTCCTTCCCGCGGCCCTCGG GAGACCGCGCTCGGCCGCAGCGGACCGCGAGAATGTCCGAAGGTGACAGCGTGGGAGACT CTGTCCATGGGAAGCCTTCCGTGGTGTACAGATTCTTCACACGGCTTGGGCAGATCTACC AGTCCTGGCTGGACAGGTCGACGCCATACACGGCCGTGCGATGGGTGGTGACGCTGGGCC TGAGCTTCGTCTACATGGTGCGCGTTTACCTGCTGCAGGGCTGGTACATCGTGACCTACG CCCTGGGGATCTACCACCTGAATCTCTTCATAGCTTTCCTCTCCCCCAAAGTGGACCCTT CCCTGATGGAAGACTCAGATGACGGCCCCTCGTTGCCGACCAAACAGAACGAGGAGTTCC GGCCCTTCATTCGAAGGCTCCCGGAGTTCAAATTTTGGCACGCAGCGACCAAGGGCGTCC TCGTGGCCATGGTCTGCACCTTCTTCGAGGCCTTCAACGTCCCGGTGTTCTGGCCCATCC TGGTCATGTACTTCGTCATGCTCTTCTGCATCACCATGAAGAGGCAGATAAAGCACATGA TCAAGTACCGGTACATCCCGTTCACGCACGGCAAGAGGACGTACAGGGGCAAGGAGGACT CGGCCAAGACGCTCACCAGCTAGACCGCCCCGCTGCGCCGCCTGCGCGTACAGTAGTTGA TCACGGGAGTTGTTTTCTTTTTAAAAAGGAGCTTCAATTATTTGTAACTGAAATATCAGG TTCTTGAAGAAACTGGCATTTAAACTGAATCGCATTGATTTATTTTTCAGGGCCATTAGG CGACCAGGCAGGGTGGCCGGGGGGCAGGGCGGGGAGGGCAGGTGGCACCCTGATGCCCAG CGCCAGGGACGCCACCCGTGACCCCATCGCCCGCCTGGAGGAAGCTCACCGGTTCCTGCG TGTGAAGGAGACCCGGGGGGACCCCGGGCTCGAGTGCCAGTCTCCCAGTTTCATCTCAGT AGAGATGTGTCGGGTCGGCCTCTTATCCTGATGACTCAAAACTGTGTTCTTAACTGCCGT GATTGCTTTTGAGGGCCTGAAATTATAAATATATATTATATTTTAATTGTTTGAGATTAT TTTGACACATTTCTTTGATACATGGAGAGTTTTGTTTTTAATTTAAATTTCTTCCCATGC AGCAGTCCCTTTTCAGAAACAGCTGGCAAGACTGCCCAGTCTCATGGGTTTTAACACCTG GCTTTTTCCACTTTCTATGGGGAAACAACTCTGATCTGCATGGCACCTTTTTTGATGTGA TAAAAACAAACACTCGTAAACATTTTACCAAATGACTTTTCAGTCCCAACTTTATTAAAG GTCGTGTTCCCGCAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-151, gnl|bosTau2|chr16 (36559543-36559393) | |
| 1-151, gnl|dasNov1|scaffold_299273 (323-482) | |
| 1-151, gnl|echTel1|scaffold_222755 (10187-10014) | |
| 1-151, gnl|hg17|chr1 (2355338-2355518) | |
| 1-151, gnl|Hg17|chr1 (2355402-2355559) | |
| 1-151, gnl|loxAfr1|scaffold_74397 (9968-10140) | |
| 1-151, gnl|mm7|chr4 (154075958-154075790) | |
| 1-151, gnl|Mm7|chr4 (154075893-154075747) | |
| 1-151, gnl|monDom2|scaffold_183 (312334-312517) | |
| 1-151, gnl|panTro1|chr1 (2263375-2263555) | |
| 1-151, gnl|rheMac2|chr1 (5459479-5459659) | |
| 1-151, gnl|rn3|chr5 (171898434-171898263) | |
| 232-357, gnl|bosTau2|chr16 (36555037-36554913) | |
| 232-357, gnl|canFam2|chr5 (60283121-60283274) | |
| 232-357, gnl|danRer3|chr8 (41393108-41392977) | |
| 232-357, gnl|dasNov1|scaffold_168873 (1084-1231) | |
| 232-357, gnl|echTel1|scaffold_222755 (4075-3942) | |
| 232-357, gnl|fr1|chrUn (70414829-70414968) | |
| 232-357, gnl|galGal2|chr21 (1459621-1459490) | |
| 232-357, gnl|hg17|chr1 (2360699-2360852) | |
| 232-357, gnl|Hg17|chr1 (2360715-2360849) | |
| 232-357, gnl|mm7|chr4 (154070460-154070326) | |
| 232-357, gnl|Mm7|chr4 (154070447-154070331) | |
| 232-357, gnl|monDom2|scaffold_183 (320562-320719) | |
| 232-357, gnl|panTro1|chr1 (2268759-2268912) | |
| 232-357, gnl|rheMac2|chr1 (5465613-5465761) | |
| 232-357, gnl|rn3|chr5 (171892813-171892679) | |
| 232-357, gnl|tetNig1|chr9 (1402191-1402059) | |
| 232-357, gnl|xenTro1|scaffold_177 (822338-822180) | |
| 652-890, gnl|bosTau2|chr16 (36550265-36550011) | |
| 652-890, gnl|Hg17|chr1 (2366634-2366926) | |
| 652-890, gnl|Mm7|chr4 (154064572-154064286) | |
| 1045-1453, gnl|bosTau2|chr16 (36549804-36549416) | |
| 1045-1453, gnl|Hg17|chr1 (2367209-2367600) | |
| 1045-1453, gnl|Mm7|chr4 (154064068-154063660) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-151, gnl|bosTau2|chr16 (36559543-36559393) | |
| 1-151, gnl|dasNov1|scaffold_299273 (323-482) | |
| 1-151, gnl|echTel1|scaffold_222755 (10187-10014) | |
| 1-151, gnl|hg17|chr1 (2355338-2355518) | |
| 1-151, gnl|Hg17|chr1 (2355402-2355559) | |
| 1-151, gnl|loxAfr1|scaffold_74397 (9968-10140) | |
| 1-151, gnl|mm7|chr4 (154075958-154075790) | |
| 1-151, gnl|Mm7|chr4 (154075893-154075747) | |
| 1-151, gnl|monDom2|scaffold_183 (312334-312517) | |
| 1-151, gnl|panTro1|chr1 (2263375-2263555) | |
| 1-151, gnl|rheMac2|chr1 (5459479-5459659) | |
| 1-151, gnl|rn3|chr5 (171898434-171898263) | |
| 232-357, gnl|bosTau2|chr16 (36555037-36554913) | |
| 232-357, gnl|canFam2|chr5 (60283121-60283274) | |
| 232-357, gnl|danRer3|chr8 (41393108-41392977) | |
| 232-357, gnl|dasNov1|scaffold_168873 (1084-1231) | |
| 232-357, gnl|echTel1|scaffold_222755 (4075-3942) | |
| 232-357, gnl|fr1|chrUn (70414829-70414968) | |
| 232-357, gnl|galGal2|chr21 (1459621-1459490) | |
| 232-357, gnl|hg17|chr1 (2360699-2360852) | |
| 232-357, gnl|Hg17|chr1 (2360715-2360849) | |
| 232-357, gnl|mm7|chr4 (154070460-154070326) | |
| 232-357, gnl|Mm7|chr4 (154070447-154070331) | |
| 232-357, gnl|monDom2|scaffold_183 (320562-320719) | |
| 232-357, gnl|panTro1|chr1 (2268759-2268912) | |
| 232-357, gnl|rheMac2|chr1 (5465613-5465761) | |
| 232-357, gnl|rn3|chr5 (171892813-171892679) | |
| 232-357, gnl|tetNig1|chr9 (1402191-1402059) | |
| 232-357, gnl|xenTro1|scaffold_177 (822338-822180) | |
| 652-890, gnl|bosTau2|chr16 (36550265-36550011) | |
| 652-890, gnl|Hg17|chr1 (2366634-2366926) | |
| 652-890, gnl|Mm7|chr4 (154064572-154064286) | |
| 1045-1453, gnl|bosTau2|chr16 (36549804-36549416) | |
| 1045-1453, gnl|Hg17|chr1 (2367209-2367600) | |
| 1045-1453, gnl|Mm7|chr4 (154064068-154063660) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| nco (0.646935) | |
| fce (0.543183) | |
| lnt (0.426925) | |
| amn (0.417711) | |
| nep (0.36785) | |
| jca (0.34188) | |
| vin (0.332557) | |
| cty (0.31224) | |
| pla (0.267344) | |
| cov (0.264306) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| jej (0.197844) | |
| eje (0.197668) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.646935) | |
| fce (0.543183) | |
| lnt (0.426925) | |
| amn (0.417711) | |
| nep (0.36785) | |
| jca (0.34188) | |
| vin (0.332557) | |
| cty (0.31224) | |
| pla (0.267344) | |
| cov (0.264306) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| jej (0.197844) | |
| eje (0.197668) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) |