Ss1.1-Tra1-TCH01G010015.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGGGTTGCAGCGCTGTCGCCTCCGGTCCGGCCTCCTCCGCGCGAGTGGACAGCGGTC TTCAGGCGGCGGGGCTCGCCCCTGACCGTCACCCCTGGGTCCCGCGGGGTTGCAGCGCTG TCGCCTCCGGTCCGGCCTCCTCCGCGCGAGTGGACAGCGGTCTTCAGGCGGCGGGAAGAG CCTGACCTAAAAATCTCCAATGGCTAACGAAGCTCATCCTTGCCCGTGCGACATTGGCCA TAGGATAGAGTACGGAGGGTTGGGGCATGAAGTTCAAGTCGAGCACATCAAGGCTTATCT CACTAAGTCCCCTGTGGACGCAGGCAAAGCAGTGATTGTCATTCAAGATATATTTGGCTG GCAGTTGCCCAATACCAGATACATGGCTGACATGCTTGCAGGAAATGGATACACAACCAT CGTTCCAGACTTCTTTGTAGGACAGGAGCCGTGGCACCCCTCTGGGGACTGGGCCACCTT CCCTGAGTGGTTGAAGACCAGAGATGCCAGAAAGATCAACAGAGAGGTTGATGCCGTCTT GAGGTATCTAAAACAACAGTGTCACGCCACGAGAATTGGCATCGTGGGATTCTGCTGGGG AGGAGTTGCTGTGCATCACCTGATGCTGAAATACCCAGAGTTCAGGGCGGGGGTGTCTGT CTACGGCATCATCAGGGACGCCGAAGATGTGTATGATTTAAAGAACCCCACCTTGTTCAT TTTTGCTGAAAATGATGCAGTGATTCCTCTTGAGCAGGTCTCTCTGCTGACTCAGAAGTT GAAAGAACACTGCAAAGTGCAATATCAGATCAAAACGTTTTCTGGGCAAACGCATGGGTT TGTGCACCGCAAGAGAGAAGACTGTTCGCCTGAGGACAAGCCCTACATTGACGAGGCCAG AAGGAATTTACTCGAGTGGCTGCACAAGTACCTGTAGCCCCAGCCGAGTGCAGACTTCTC CAGAAAAGCTCTCATCCGGAAATTGACTTTGAAATCCTTAGATCATTTGATTTCATTTTC ACCTGACAGAAAATAAATCAAGGAATCCTGGAATTCATTACATCATCTGAAACACAAATT CAGTGGAAAAATTGTAATGTATGAAATACCTTAATTTTTCACATGTGCCTAAATAAAAAA AATTACCAACAGATCAGTACCTGAAGGATTTGAATGGTATATATTCTAACTCTTAGTAGA AACTCATGACTATCTGGGGACCAGCTGACAGCTCGGCTATGGCCTTCCTGGCCTTGAATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGGGTTGCAGCGCTGTCGCCTCCGGTCCGGCCTCCTCCGCGCGAGTGGACAGCGGTC TTCAGGCGGCGGGGCTCGCCCCTGACCGTCACCCCTGGGTCCCGCGGGGTTGCAGCGCTG TCGCCTCCGGTCCGGCCTCCTCCGCGCGAGTGGACAGCGGTCTTCAGGCGGCGGGAAGAG CCTGACCTAAAAATCTCCAATGGCTAACGAAGCTCATCCTTGCCCGTGCGACATTGGCCA TAGGATAGAGTACGGAGGGTTGGGGCATGAAGTTCAAGTCGAGCACATCAAGGCTTATCT CACTAAGTCCCCTGTGGACGCAGGCAAAGCAGTGATTGTCATTCAAGATATATTTGGCTG GCAGTTGCCCAATACCAGATACATGGCTGACATGCTTGCAGGAAATGGATACACAACCAT CGTTCCAGACTTCTTTGTAGGACAGGAGCCGTGGCACCCCTCTGGGGACTGGGCCACCTT CCCTGAGTGGTTGAAGACCAGAGATGCCAGAAAGATCAACAGAGAGGTTGATGCCGTCTT GAGGTATCTAAAACAACAGTGTCACGCCACGAGAATTGGCATCGTGGGATTCTGCTGGGG AGGAGTTGCTGTGCATCACCTGATGCTGAAATACCCAGAGTTCAGGGCGGGGGTGTCTGT CTACGGCATCATCAGGGACGCCGAAGATGTGTATGATTTAAAGAACCCCACCTTGTTCAT TTTTGCTGAAAATGATGCAGTGATTCCTCTTGAGCAGGTCTCTCTGCTGACTCAGAAGTT GAAAGAACACTGCAAAGTGCAATATCAGATCAAAACGTTTTCTGGGCAAACGCATGGGTT TGTGCACCGCAAGAGAGAAGACTGTTCGCCTGAGGACAAGCCCTACATTGACGAGGCCAG AAGGAATTTACTCGAGTGGCTGCACAAGTACCTGTAGCCCCAGCCGAGTGCAGACTTCTC CAGAAAAGCTCTCATCCGGAAATTGACTTTGAAATCCTTAGATCATTTGATTTCATTTTC ACCTGACAGAAAATAAATCAAGGAATCCTGGAATTCATTACATCATCTGAAACACAAATT CAGTGGAAAAATTGTAATGTATGAAATACCTTAATTTTTCACATGTGCCTAAATAAAAAA AATTACCAACAGATCAGTACCTGAAGGATTTGAATGGTATATATTCTAACTCTTAGTAGA AACTCATGACTATCTGGGGACCAGCTGACAGCTCGGCTATGGCCTTCCTGGCCTTGAATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 179-414, gnl|bosTau2|chr20 (37864627-37864862) | |
| 179-414, gnl|Hg17|chr5 (10343895-10343660) | |
| 179-414, gnl|Mm7|chr15 (31693953-31694188) | |
| 521-666, gnl|bosTau2|chr20 (37873078-37873223) | |
| 521-666, gnl|canFam2|chr34 (7032623-7032444) | |
| 521-666, gnl|danRer3|chr24 (10920731-10920569) | |
| 521-666, gnl|dasNov1|scaffold_93260 (4328-4144) | |
| 521-666, gnl|echTel1|scaffold_319194 (3634-3448) | |
| 521-666, gnl|galGal2|chr2 (78280976-78280790) | |
| 521-666, gnl|hg17|chr5 (10339457-10339645) | |
| 521-666, gnl|Hg17|chr5 (10339610-10339465) | |
| 521-666, gnl|mm7|chr15 (31697561-31697376) | |
| 521-666, gnl|Mm7|chr15 (31697408-31697553) | |
| 521-666, gnl|monDom2|scaffold_4 (30145156-30145333) | |
| 521-666, gnl|oryCun1|scaffold_104356 (2784-2975) | |
| 521-666, gnl|panTro1|chr4 (10561047-10561235) | |
| 521-666, gnl|rheMac2|chr6 (10218642-10218830) | |
| 521-666, gnl|rn3|chr2 (83621677-83621499) | |
| 521-666, gnl|tetNig1|chr6 (1477855-1477701) | |
| 521-666, gnl|xenTro1|scaffold_989 (172119-172300) | |
| 755-1260, gnl|bosTau2|chr20 (37877127-37877631) | |
| 755-1260, gnl|Hg17|chr5 (10333747-10332602) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 179-414, gnl|bosTau2|chr20 (37864627-37864862) | |
| 179-414, gnl|Hg17|chr5 (10343895-10343660) | |
| 179-414, gnl|Mm7|chr15 (31693953-31694188) | |
| 521-666, gnl|bosTau2|chr20 (37873078-37873223) | |
| 521-666, gnl|canFam2|chr34 (7032623-7032444) | |
| 521-666, gnl|danRer3|chr24 (10920731-10920569) | |
| 521-666, gnl|dasNov1|scaffold_93260 (4328-4144) | |
| 521-666, gnl|echTel1|scaffold_319194 (3634-3448) | |
| 521-666, gnl|galGal2|chr2 (78280976-78280790) | |
| 521-666, gnl|hg17|chr5 (10339457-10339645) | |
| 521-666, gnl|Hg17|chr5 (10339610-10339465) | |
| 521-666, gnl|mm7|chr15 (31697561-31697376) | |
| 521-666, gnl|Mm7|chr15 (31697408-31697553) | |
| 521-666, gnl|monDom2|scaffold_4 (30145156-30145333) | |
| 521-666, gnl|oryCun1|scaffold_104356 (2784-2975) | |
| 521-666, gnl|panTro1|chr4 (10561047-10561235) | |
| 521-666, gnl|rheMac2|chr6 (10218642-10218830) | |
| 521-666, gnl|rn3|chr2 (83621677-83621499) | |
| 521-666, gnl|tetNig1|chr6 (1477855-1477701) | |
| 521-666, gnl|xenTro1|scaffold_989 (172119-172300) | |
| 755-1260, gnl|bosTau2|chr20 (37877127-37877631) | |
| 755-1260, gnl|Hg17|chr5 (10333747-10332602) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| lun (0.902935) | |
| tbr (0.616713) | |
| ssp (0.542079) | |
| amn (0.417711) | |
| vin (0.332557) | |
| cki (0.330469) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| mga (0.160205) | |
| cli (0.152812) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| ret (0.128733) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| spc (0.113366) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.902935) | |
| tbr (0.616713) | |
| ssp (0.542079) | |
| amn (0.417711) | |
| vin (0.332557) | |
| cki (0.330469) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| mga (0.160205) | |
| cli (0.152812) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| ret (0.128733) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| spc (0.113366) |