Ss1.1-Tra1-TCH01G010045.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACGTTTACTTCAAGTGTTTAAAAAGGAACGTCCCAGGGTGCCCCACCCGCGAGGGGGAG GGAGTTGGGGAATCAGGGTCACTCCCGGAACCCTCAGGTCCCCCACCGCTTCCGACCTGG CCACCAGCCTCCTTCAGTCAGTCCCCTGGGGACCGAGACACCCAGGGTGCAGGGCCAGGG CCCAGGGGCCACACGGAGGCGCGAGGAGGGTAGGGTGACACGGGCTCCCGCGAAGCGGCC GCCCCCAGCGGATGCGGAGCCTCCTCCCGCCTGGATCACTGCTTGCTCCTCTTCTTGGAG CTTTTAAACCCGCGTGAGGCACCTTGACCGAAGCAGATGGTGGAAGGGACCCTGTGGCCG TAGGCCCGCTTCTCTCCCGAGGGTTCTGGAGAGGGCTCCAGGTGTTCAGAACAGACTTCC ATGGCGTCTCCTTGCGACGTCACCCCATCGTCCACCAGGGCCTCTGCTGGCACCTGCGTG GCCCCGGGCGTGGCTGGGCCTTTGCTCTTCCTCGGTTTATCGAAGCGGAAGTCTGCGGGG TAGAGGTGACCAGTCACCAGGTGCTCCTTCCTGTCTCTGCTGGTTCTGAACCTCTCTGGG CAGCCCTCCACCAAGCACTGATACATGTCCTGCCGCTCGGCCAAGATCTGGAACAAGGAG TCGTGCCACTCCAGAATGTGGGTGTCCAGCAGGTGTCCAGAGGGGAAGGCCCGCTTGCAG AAGGAGCAGACGTTCCTGTGCAGCGTGTGGTAGTGGTGCTCGTAGTCCTCCAGGACATCA AACACCTGGCAGCAGCCAGCCACGTGACAGGTGAACTCGGGCACCCTGGGCCTCTCGGGT GCCCCGGCCACCTGCGTAAGCACATCCTGGAGGTAGAGGTGCCGCTGCACGTCCCCGTCC TCGAAGAACTCGTGCTCCCGTGGGAAGCGCACCTGGCGCGCCGCGAAGGTGAAGGGAGCG GCCCCGGCCGCGGGGTCCCGCTCCACGGGCAGCGGCTCGGCCGCCCCGGCGGCCCCCGCC AGGCGGACGTGCAGCGCGGGCGGCAGCTGCATCGCCCAGCGAGCCGGCGCCCCCACGGCC TGTCGGCCACCGTCCGCACGTCGGCGGCGGCGGGGCGGGGCCGGATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACGTTTACTTCAAGTGTTTAAAAAGGAACGTCCCAGGGTGCCCCACCCGCGAGGGGGAG GGAGTTGGGGAATCAGGGTCACTCCCGGAACCCTCAGGTCCCCCACCGCTTCCGACCTGG CCACCAGCCTCCTTCAGTCAGTCCCCTGGGGACCGAGACACCCAGGGTGCAGGGCCAGGG CCCAGGGGCCACACGGAGGCGCGAGGAGGGTAGGGTGACACGGGCTCCCGCGAAGCGGCC GCCCCCAGCGGATGCGGAGCCTCCTCCCGCCTGGATCACTGCTTGCTCCTCTTCTTGGAG CTTTTAAACCCGCGTGAGGCACCTTGACCGAAGCAGATGGTGGAAGGGACCCTGTGGCCG TAGGCCCGCTTCTCTCCCGAGGGTTCTGGAGAGGGCTCCAGGTGTTCAGAACAGACTTCC ATGGCGTCTCCTTGCGACGTCACCCCATCGTCCACCAGGGCCTCTGCTGGCACCTGCGTG GCCCCGGGCGTGGCTGGGCCTTTGCTCTTCCTCGGTTTATCGAAGCGGAAGTCTGCGGGG TAGAGGTGACCAGTCACCAGGTGCTCCTTCCTGTCTCTGCTGGTTCTGAACCTCTCTGGG CAGCCCTCCACCAAGCACTGATACATGTCCTGCCGCTCGGCCAAGATCTGGAACAAGGAG TCGTGCCACTCCAGAATGTGGGTGTCCAGCAGGTGTCCAGAGGGGAAGGCCCGCTTGCAG AAGGAGCAGACGTTCCTGTGCAGCGTGTGGTAGTGGTGCTCGTAGTCCTCCAGGACATCA AACACCTGGCAGCAGCCAGCCACGTGACAGGTGAACTCGGGCACCCTGGGCCTCTCGGGT GCCCCGGCCACCTGCGTAAGCACATCCTGGAGGTAGAGGTGCCGCTGCACGTCCCCGTCC TCGAAGAACTCGTGCTCCCGTGGGAAGCGCACCTGGCGCGCCGCGAAGGTGAAGGGAGCG GCCCCGGCCGCGGGGTCCCGCTCCACGGGCAGCGGCTCGGCCGCCCCGGCGGCCCCCGCC AGGCGGACGTGCAGCGCGGGCGGCAGCTGCATCGCCCAGCGAGCCGGCGCCCCCACGGCC TGTCGGCCACCGTCCGCACGTCGGCGGCGGCGGGGCGGGGCCGGATGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 351-482, gnl|bosTau2|chr26 (34935181-34935312) | |
| 351-482, gnl|Hg17|chr10 (135014227-135014105) | |
| 351-482, gnl|Mm7|chr7 (136453233-136453117) | |
| 624-829, gnl|bosTau2|chr26 (34936677-34936882) | |
| 624-829, gnl|canFam2|chr28 (43875485-43875282) | |
| 624-829, gnl|canFam2|chr28 (43875271-43875425) | |
| 624-829, gnl|danRer3|chr13 (28132666-28132817) | |
| 624-829, gnl|dasNov1|scaffold_91470 (6783-6577) | |
| 624-829, gnl|dasNov1|scaffold_91470 (6566-6722) | |
| 624-829, gnl|echTel1|scaffold_273397 (14937-15082) | |
| 624-829, gnl|fr1|chrUn (16492000-16491846) | |
| 624-829, gnl|galGal2|chr6 (8721809-8721966) | |
| 624-829, gnl|hg17|chr10 (135012148-135012302) | |
| 624-829, gnl|Hg17|chr10 (135012362-135012157) | |
| 624-829, gnl|hg17|chr8 (84368853-84369060) | |
| 624-829, gnl|mm7|chr7 (136451209-136451004) | |
| 624-829, gnl|mm7|chr7 (136450993-136451148) | |
| 624-829, gnl|Mm7|chr7 (136451208-136451003) | |
| 624-829, gnl|monDom2|scaffold_153 (172559-172697) | |
| 624-829, gnl|panTro1|chr7 (86486203-86486409) | |
| 624-829, gnl|panTro1|chr8 (137842431-137842585) | |
| 624-829, gnl|rheMac2|chr8 (85744218-85744424) | |
| 624-829, gnl|rheMac2|chr9 (132959138-132959292) | |
| 624-829, gnl|rn3|chr1 (199972722-199972877) | |
| 624-829, gnl|tetNig1|chr17 (4605657-4605812) | |
| 899-1128, gnl|bosTau2|chr26 (34908607-34908836) | |
| 899-1128, gnl|echTel1|scaffold_273397 (14052-14401) | |
| 899-1128, gnl|hg17|chr10 (135011111-135011496) | |
| 899-1128, gnl|Hg17|chr10 (135011482-135011265) | |
| 899-1128, gnl|loxAfr1|scaffold_109386 (730-378) | |
| 899-1128, gnl|mm7|chr7 (136450042-136450406) | |
| 899-1128, gnl|Mm7|chr7 (136450394-136450183) | |
| 899-1128, gnl|monDom2|scaffold_384 (26424-26794) | |
| 899-1128, gnl|oryCun1|scaffold_176317 (85664-85299) | |
| 899-1128, gnl|rheMac2|chr9 (132958014-132958391) | |
| 899-1128, gnl|rn3|chr1 (199971766-199972130) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 351-482, gnl|bosTau2|chr26 (34935181-34935312) | |
| 351-482, gnl|Hg17|chr10 (135014227-135014105) | |
| 351-482, gnl|Mm7|chr7 (136453233-136453117) | |
| 624-829, gnl|bosTau2|chr26 (34936677-34936882) | |
| 624-829, gnl|canFam2|chr28 (43875485-43875282) | |
| 624-829, gnl|canFam2|chr28 (43875271-43875425) | |
| 624-829, gnl|danRer3|chr13 (28132666-28132817) | |
| 624-829, gnl|dasNov1|scaffold_91470 (6783-6577) | |
| 624-829, gnl|dasNov1|scaffold_91470 (6566-6722) | |
| 624-829, gnl|echTel1|scaffold_273397 (14937-15082) | |
| 624-829, gnl|fr1|chrUn (16492000-16491846) | |
| 624-829, gnl|galGal2|chr6 (8721809-8721966) | |
| 624-829, gnl|hg17|chr10 (135012148-135012302) | |
| 624-829, gnl|Hg17|chr10 (135012362-135012157) | |
| 624-829, gnl|hg17|chr8 (84368853-84369060) | |
| 624-829, gnl|mm7|chr7 (136451209-136451004) | |
| 624-829, gnl|mm7|chr7 (136450993-136451148) | |
| 624-829, gnl|Mm7|chr7 (136451208-136451003) | |
| 624-829, gnl|monDom2|scaffold_153 (172559-172697) | |
| 624-829, gnl|panTro1|chr7 (86486203-86486409) | |
| 624-829, gnl|panTro1|chr8 (137842431-137842585) | |
| 624-829, gnl|rheMac2|chr8 (85744218-85744424) | |
| 624-829, gnl|rheMac2|chr9 (132959138-132959292) | |
| 624-829, gnl|rn3|chr1 (199972722-199972877) | |
| 624-829, gnl|tetNig1|chr17 (4605657-4605812) | |
| 899-1128, gnl|bosTau2|chr26 (34908607-34908836) | |
| 899-1128, gnl|echTel1|scaffold_273397 (14052-14401) | |
| 899-1128, gnl|hg17|chr10 (135011111-135011496) | |
| 899-1128, gnl|Hg17|chr10 (135011482-135011265) | |
| 899-1128, gnl|loxAfr1|scaffold_109386 (730-378) | |
| 899-1128, gnl|mm7|chr7 (136450042-136450406) | |
| 899-1128, gnl|Mm7|chr7 (136450394-136450183) | |
| 899-1128, gnl|monDom2|scaffold_384 (26424-26794) | |
| 899-1128, gnl|oryCun1|scaffold_176317 (85664-85299) | |
| 899-1128, gnl|rheMac2|chr9 (132958014-132958391) | |
| 899-1128, gnl|rn3|chr1 (199971766-199972130) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| pla (0.401016) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| nbm (0.0993246) |