Ss1.1-Tra1-TCH01G010063.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAACTTCCACTTCGTTCATCGATCGGCCGACGTGGACAGCGTGGTGAGCGGGACCCTG CGCTCAGCCTTCGAGTACGGCGGCCAGAAGTGCTCGGCCTGCTCCCGCCTCTACGTGCCC GGCTCACTGTGGCCGCAGATCAAAGGGCGGCTGCTGGAGGAGCACGGCAGGATCAAAGTG GGCGACCCTGCGGAGGATTTTGGGACCTTCTTCTCCGCCGTGATTGATGCTAAGTCCTTT GGCCGCATCAGGAAGTGGCTGGAGCATACCCGCTCCTCCCCCAGCCTCACCATCCTGGCT GGGGGCCAGTGTGATGACTCCGTGGGGTACTTCGTGGAGCCCTGCATCATCGAGAGCAAG GACCCCCAGGAACCCATCATGAAGGAGGAGATCTTCGGGCCTCTGCTGACGGTGTACGTC TACCCTGATGACAAGTACAAAGAGACCCTGCGGCTGGTCGACAGCACTACCAGCTATGGC CTCACAGGGGCAGTGTTTGCCCAGGATAAGGATGTTGTCCGGGAGGCCACAGAGATGCTG AGGAATGCTGCTGGCAACTTCTACATCAATGACAAGTCCACGGGGTCGGTGGTGGGCCAG CAGCCCTTTGGGGGGGCCCGAGCCTCAGGGACCAACGACAAGCCCGGGGGACCCCACTAT GTCCTGCGGTGGACATCACCCCAGGTCATCAAGGAGACTCACAAGCCGCTGGGGGATTGG CGCTACCCATACATGCAGTGAGCACCCCGCTCGGCGCCTCTGTGGTCCACCTATCTGTCC GTCCAGATGACTGATCTCAGTGCACTGATCCCACCCCCCGAGCCCTCTACCCGGGTCCCC ACAGGACGACCCTCTTTCTAGGGCAAGGCCTGACCCCCGGCCCCTCTGTCCTGCTCCACC CCTCAAAGTCTAATTTGAGATCATGCTGTGAGGAGGAACAGGGCTGCCACCCCAACCCCA TCAGGTGTCCTAGGAATTCCATCTGGTTGGTGTGACCGTGGTGTCCGGCTGGTTCTCCGT CTGTCCCTTTCTTCTTCACACTGGCCCCGTGGCTCTGGGACCTGGGGAGGGGCAGTGGAG TTGCTTGCGGATCCGTGGAGGAAAAGGAGGCAGCTCTGGGCCCCCTGACAAACCTCACCA CCCACAGTGGCCTTGGCCCTGGCTGCTCTGCGCCTCGGGATTGGGCATGGGCAGGGTGAC GCGAGCTGTGGCCTGTGGCTGCAGGGTGTCAGGACACCCACTGGCCTTCTGGTCCAGGCC CCGGGCCACCCACTTCTTCACTAGCTCTTTGTCCAGATGCACCTATGCGTACCTGTGCCC TGTGCCCAACCAAAAGCCTTAGATGCTGTGTGCCTTCCCCCAGAGTGCCTGTGCTCGCCT GAGGCCCACAGACCATCTCCATGTGGTGGGGCTGGGGGCGGCTACCAGTCACCTGCTCGT TGCTCGTGGGGCGTGCTGGGCCTTCCCGTTTGGGCTGTGAGCTTGATAGGGCGGGCCCTT CCTGCTGCTTCCCTGCTTCCCTTAACTCTGGGTCCCGCTTCTAGAGAGAGCCACTCTCAG AGCCCCAGTTGCCCTGGGATTTCCTGCAGGAGCTCAGCGCCCACTGGCCATGGTCGATCA TAGATGTTGCTCCCATTTCTCATTTAGCCCTGACATTCTACAGAATGTTCTGTAGAATCA TCCCTCCTTTGCGTGTTAGTGGCTCTGTGTGGACTGGCCCCTAAGAGGCCTGTTCTGTGA TGCAGCCAATACATGCTGGGTGGATTCTGGGTGGCCAGGGGGCTGGAGGGGGTGACTTTG GAGGACAGTTTCTAGGGGGCCCTGAAAGAGCTATGCCCTCCTCAAGCCGGGCTGCATGGG GCCCCCATGGGGCTGGGGTGGCCATTCCCCAAGTGCATGGTTTCACACCGTGGCCCAAGG TCAGGGGTGGGTCCTGATGCTGCCCGGCTTGTTTCCCACGAGATGCCAGGTCAGGAGGGG GCTTCTACACTGGTTCTGGTTCTACACTGAAGTGGCAATGGGATTTGCCCTGATGCCACC TAATAAAGTGCCTGTTACTTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAACTTCCACTTCGTTCATCGATCGGCCGACGTGGACAGCGTGGTGAGCGGGACCCTG CGCTCAGCCTTCGAGTACGGCGGCCAGAAGTGCTCGGCCTGCTCCCGCCTCTACGTGCCC GGCTCACTGTGGCCGCAGATCAAAGGGCGGCTGCTGGAGGAGCACGGCAGGATCAAAGTG GGCGACCCTGCGGAGGATTTTGGGACCTTCTTCTCCGCCGTGATTGATGCTAAGTCCTTT GGCCGCATCAGGAAGTGGCTGGAGCATACCCGCTCCTCCCCCAGCCTCACCATCCTGGCT GGGGGCCAGTGTGATGACTCCGTGGGGTACTTCGTGGAGCCCTGCATCATCGAGAGCAAG GACCCCCAGGAACCCATCATGAAGGAGGAGATCTTCGGGCCTCTGCTGACGGTGTACGTC TACCCTGATGACAAGTACAAAGAGACCCTGCGGCTGGTCGACAGCACTACCAGCTATGGC CTCACAGGGGCAGTGTTTGCCCAGGATAAGGATGTTGTCCGGGAGGCCACAGAGATGCTG AGGAATGCTGCTGGCAACTTCTACATCAATGACAAGTCCACGGGGTCGGTGGTGGGCCAG CAGCCCTTTGGGGGGGCCCGAGCCTCAGGGACCAACGACAAGCCCGGGGGACCCCACTAT GTCCTGCGGTGGACATCACCCCAGGTCATCAAGGAGACTCACAAGCCGCTGGGGGATTGG CGCTACCCATACATGCAGTGAGCACCCCGCTCGGCGCCTCTGTGGTCCACCTATCTGTCC GTCCAGATGACTGATCTCAGTGCACTGATCCCACCCCCCGAGCCCTCTACCCGGGTCCCC ACAGGACGACCCTCTTTCTAGGGCAAGGCCTGACCCCCGGCCCCTCTGTCCTGCTCCACC CCTCAAAGTCTAATTTGAGATCATGCTGTGAGGAGGAACAGGGCTGCCACCCCAACCCCA TCAGGTGTCCTAGGAATTCCATCTGGTTGGTGTGACCGTGGTGTCCGGCTGGTTCTCCGT CTGTCCCTTTCTTCTTCACACTGGCCCCGTGGCTCTGGGACCTGGGGAGGGGCAGTGGAG TTGCTTGCGGATCCGTGGAGGAAAAGGAGGCAGCTCTGGGCCCCCTGACAAACCTCACCA CCCACAGTGGCCTTGGCCCTGGCTGCTCTGCGCCTCGGGATTGGGCATGGGCAGGGTGAC GCGAGCTGTGGCCTGTGGCTGCAGGGTGTCAGGACACCCACTGGCCTTCTGGTCCAGGCC CCGGGCCACCCACTTCTTCACTAGCTCTTTGTCCAGATGCACCTATGCGTACCTGTGCCC TGTGCCCAACCAAAAGCCTTAGATGCTGTGTGCCTTCCCCCAGAGTGCCTGTGCTCGCCT GAGGCCCACAGACCATCTCCATGTGGTGGGGCTGGGGGCGGCTACCAGTCACCTGCTCGT TGCTCGTGGGGCGTGCTGGGCCTTCCCGTTTGGGCTGTGAGCTTGATAGGGCGGGCCCTT CCTGCTGCTTCCCTGCTTCCCTTAACTCTGGGTCCCGCTTCTAGAGAGAGCCACTCTCAG AGCCCCAGTTGCCCTGGGATTTCCTGCAGGAGCTCAGCGCCCACTGGCCATGGTCGATCA TAGATGTTGCTCCCATTTCTCATTTAGCCCTGACATTCTACAGAATGTTCTGTAGAATCA TCCCTCCTTTGCGTGTTAGTGGCTCTGTGTGGACTGGCCCCTAAGAGGCCTGTTCTGTGA TGCAGCCAATACATGCTGGGTGGATTCTGGGTGGCCAGGGGGCTGGAGGGGGTGACTTTG GAGGACAGTTTCTAGGGGGCCCTGAAAGAGCTATGCCCTCCTCAAGCCGGGCTGCATGGG GCCCCCATGGGGCTGGGGTGGCCATTCCCCAAGTGCATGGTTTCACACCGTGGCCCAAGG TCAGGGGTGGGTCCTGATGCTGCCCGGCTTGTTTCCCACGAGATGCCAGGTCAGGAGGGG GCTTCTACACTGGTTCTGGTTCTACACTGAAGTGGCAATGGGATTTGCCCTGATGCCACC TAATAAAGTGCCTGTTACTTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1224-1332, - strand, RNAz p=0.634739 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1224-1332, - strand, RNAz p=0.634739 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-183, gnl|bosTau2|chr2 (60798365-60798183) | |
| 1-183, gnl|canFam2|chr2 (82601186-82600961) | |
| 1-183, gnl|danRer3|chr3 (12986624-12986415) | |
| 1-183, gnl|galGal2|chr21 (4364178-4364420) | |
| 1-183, gnl|hg17|chr1 (18949209-18949453) | |
| 1-183, gnl|Hg17|chr1 (18949401-18949219) | |
| 1-183, gnl|mm7|chr4 (139020723-139020488) | |
| 1-183, gnl|Mm7|chr4 (139020529-139020711) | |
| 1-183, gnl|monDom2|scaffold_276 (250651-250890) | |
| 1-183, gnl|panTro1|chr1 (19172053-19172297) | |
| 1-183, gnl|rheMac2|chr1 (21522864-21523108) | |
| 1-183, gnl|rn3|chr5 (158456227-158455992) | |
| 1-183, gnl|tetNig1|chrUn_random (89620436-89620203) | |
| 1-183, gnl|xenTro1|scaffold_19671 (2565-2318) | |
| 233-391, gnl|bosTau2|chr2 (60797081-60796923) | |
| 233-391, gnl|canFam2|chr2 (82602312-82602134) | |
| 233-391, gnl|danRer3|chr3 (12987196-12987032) | |
| 233-391, gnl|galGal2|chr21 (4362701-4362880) | |
| 233-391, gnl|hg17|chr1 (18948112-18948291) | |
| 233-391, gnl|Hg17|chr1 (18948269-18948111) | |
| 233-391, gnl|loxAfr1|scaffold_41416 (38852-39031) | |
| 233-391, gnl|mm7|chr4 (139021988-139021812) | |
| 233-391, gnl|Mm7|chr4 (139021829-139021987) | |
| 233-391, gnl|monDom2|scaffold_276 (249005-249181) | |
| 233-391, gnl|oryCun1|scaffold_170019 (8123-7948) | |
| 233-391, gnl|panTro1|chr1 (19170952-19171131) | |
| 233-391, gnl|rheMac2|chr1 (21521785-21521961) | |
| 233-391, gnl|rn3|chr5 (158457544-158457368) | |
| 233-391, gnl|tetNig1|chrUn_random (89620807-89620648) | |
| 233-391, gnl|xenTro1|scaffold_1107 (230098-230260) | |
| 623-1463, gnl|bosTau2|chr2 (60794630-60793756) | |
| 623-1463, gnl|Hg17|chr1 (18944763-18943933) | |
| 1670-2062, gnl|bosTau2|chr2 (60793564-60793161) | |
| 1670-2062, gnl|Hg17|chr1 (18943695-18943230) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-183, gnl|bosTau2|chr2 (60798365-60798183) | |
| 1-183, gnl|canFam2|chr2 (82601186-82600961) | |
| 1-183, gnl|danRer3|chr3 (12986624-12986415) | |
| 1-183, gnl|galGal2|chr21 (4364178-4364420) | |
| 1-183, gnl|hg17|chr1 (18949209-18949453) | |
| 1-183, gnl|Hg17|chr1 (18949401-18949219) | |
| 1-183, gnl|mm7|chr4 (139020723-139020488) | |
| 1-183, gnl|Mm7|chr4 (139020529-139020711) | |
| 1-183, gnl|monDom2|scaffold_276 (250651-250890) | |
| 1-183, gnl|panTro1|chr1 (19172053-19172297) | |
| 1-183, gnl|rheMac2|chr1 (21522864-21523108) | |
| 1-183, gnl|rn3|chr5 (158456227-158455992) | |
| 1-183, gnl|tetNig1|chrUn_random (89620436-89620203) | |
| 1-183, gnl|xenTro1|scaffold_19671 (2565-2318) | |
| 233-391, gnl|bosTau2|chr2 (60797081-60796923) | |
| 233-391, gnl|canFam2|chr2 (82602312-82602134) | |
| 233-391, gnl|danRer3|chr3 (12987196-12987032) | |
| 233-391, gnl|galGal2|chr21 (4362701-4362880) | |
| 233-391, gnl|hg17|chr1 (18948112-18948291) | |
| 233-391, gnl|Hg17|chr1 (18948269-18948111) | |
| 233-391, gnl|loxAfr1|scaffold_41416 (38852-39031) | |
| 233-391, gnl|mm7|chr4 (139021988-139021812) | |
| 233-391, gnl|Mm7|chr4 (139021829-139021987) | |
| 233-391, gnl|monDom2|scaffold_276 (249005-249181) | |
| 233-391, gnl|oryCun1|scaffold_170019 (8123-7948) | |
| 233-391, gnl|panTro1|chr1 (19170952-19171131) | |
| 233-391, gnl|rheMac2|chr1 (21521785-21521961) | |
| 233-391, gnl|rn3|chr5 (158457544-158457368) | |
| 233-391, gnl|tetNig1|chrUn_random (89620807-89620648) | |
| 233-391, gnl|xenTro1|scaffold_1107 (230098-230260) | |
| 623-1463, gnl|bosTau2|chr2 (60794630-60793756) | |
| 623-1463, gnl|Hg17|chr1 (18944763-18943933) | |
| 1670-2062, gnl|bosTau2|chr2 (60793564-60793161) | |
| 1670-2062, gnl|Hg17|chr1 (18943695-18943230) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| ton (0.1755) |