Ss1.1-Tra1-TCH01G010094.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCTGAGGAGCGGGATCTAACCCAGGAGCAGACCGGTGACGGTGCGGACGGGTCAGAAG CGTAGAGGCGGCGGCAAAATGGCGGCGCCTGAGGAGCGGGATCTAACCCAGGAGCAGACC GAGAAGCTGCTGCAGTTTCAGGATCTGACTGGCATAGAATCTATGGATCAGTGTCGCCAT ACCTTGGAACAGCATAACTGGAACATAGAGGCTGCTGTACAAGATAGACTGAATGAGCAA GAGGGTGTACCAAGTGTTTTCAACCCACCACCATCCCGACCCCTGCAGGTTAATACAGCT GACCACAGGATCTACAGCTATGTTGTCTCAAGACCACAGCCAAGGGGGCTGCTTGGATGG GGTTATTACTTGATAATGCTTCCATTCCGGTTTACCTATTATACAATACTTGATATATTT AGGTTTGCTCTTCGTTTTATACGACCTGACCCTCGCAGCCGGGTCACTGACCCTGTTGGG GACATTGTTTCATTTATGCACTCTTTTGAAGAGAAATATGGGAGGGCACACCCTGTCTTC TACCAGGGAACGTACAGCCAGGCACTCAATGATGCCAAACGGGAACTCCGCTTTCTTTTG GTTTATCTTCATGGAGATGATCACCAGGACTCTGATGAGTTCTGTCGCAACACACTATGT GCACCTGAAGTTATTTCACTAATAAACACGAGAATGCTCTTCTGGGCATGCTCCACAAAC AAACCTGAGGGATACAGGGTCTCACAGGCTTTACGAGAAAACACCTATCCATTCCTGGCC ATGATTATGCTGAAGGATCGGAGGATGACTGTGGTAGGACGGCTAGAAGGCCTTATCCAG CCTGATGACCTCATTAACCAGCTGACATTTATCATGGATGCAAACCAGACTTACCTAGTG TCAGAACGTCTAGAAAGGGAAGAACGGAACCAGACCCAGGTGCTGAGACAGCAACAGGAT GAGGCATACTTGGCATCTCTCAGGGCTGACCAGGAGAAAGAGAGAAAGAAGCGGGAGGAG CGAGAGCGAAAACGGCGGAAGGAGGAAGAGGTACAGCAGCAGAAGTTGGCAGAGGAGAGG CGGCGGCGGAATTTACAAGAGGAGAAGGAAAGGAAGTTGGAGTGCCTGCCCCCGGAGCCT TCCCCTGATGACCCTGAGAGTGTCAAAATAATTTTCAAACTACCCAATGATTCTCGAGTA GAGAGACGATTCCACTTTTCACAGTCTCTAACAGTAATCCACGACTTCTTATTCTCTTTG AAAGAAAGCCCTGAAAAGTTTCAGATTGAAGCCAATTTTCCCCGGAGGGTGCTGCCCTGC ATTCCTTCAGAGGAGTGGCCCAACCCCCCCACACTGCAGGAGGCCGGACTCAGCCACACA GAAGTTCTCTTTGTTCAGGACCTAACAGATGAATGACACTTTTTTTCCTCTCCTCCTCTC CCACCCCAATCCCTAAAAGAAATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCTGAGGAGCGGGATCTAACCCAGGAGCAGACCGGTGACGGTGCGGACGGGTCAGAAG CGTAGAGGCGGCGGCAAAATGGCGGCGCCTGAGGAGCGGGATCTAACCCAGGAGCAGACC GAGAAGCTGCTGCAGTTTCAGGATCTGACTGGCATAGAATCTATGGATCAGTGTCGCCAT ACCTTGGAACAGCATAACTGGAACATAGAGGCTGCTGTACAAGATAGACTGAATGAGCAA GAGGGTGTACCAAGTGTTTTCAACCCACCACCATCCCGACCCCTGCAGGTTAATACAGCT GACCACAGGATCTACAGCTATGTTGTCTCAAGACCACAGCCAAGGGGGCTGCTTGGATGG GGTTATTACTTGATAATGCTTCCATTCCGGTTTACCTATTATACAATACTTGATATATTT AGGTTTGCTCTTCGTTTTATACGACCTGACCCTCGCAGCCGGGTCACTGACCCTGTTGGG GACATTGTTTCATTTATGCACTCTTTTGAAGAGAAATATGGGAGGGCACACCCTGTCTTC TACCAGGGAACGTACAGCCAGGCACTCAATGATGCCAAACGGGAACTCCGCTTTCTTTTG GTTTATCTTCATGGAGATGATCACCAGGACTCTGATGAGTTCTGTCGCAACACACTATGT GCACCTGAAGTTATTTCACTAATAAACACGAGAATGCTCTTCTGGGCATGCTCCACAAAC AAACCTGAGGGATACAGGGTCTCACAGGCTTTACGAGAAAACACCTATCCATTCCTGGCC ATGATTATGCTGAAGGATCGGAGGATGACTGTGGTAGGACGGCTAGAAGGCCTTATCCAG CCTGATGACCTCATTAACCAGCTGACATTTATCATGGATGCAAACCAGACTTACCTAGTG TCAGAACGTCTAGAAAGGGAAGAACGGAACCAGACCCAGGTGCTGAGACAGCAACAGGAT GAGGCATACTTGGCATCTCTCAGGGCTGACCAGGAGAAAGAGAGAAAGAAGCGGGAGGAG CGAGAGCGAAAACGGCGGAAGGAGGAAGAGGTACAGCAGCAGAAGTTGGCAGAGGAGAGG CGGCGGCGGAATTTACAAGAGGAGAAGGAAAGGAAGTTGGAGTGCCTGCCCCCGGAGCCT TCCCCTGATGACCCTGAGAGTGTCAAAATAATTTTCAAACTACCCAATGATTCTCGAGTA GAGAGACGATTCCACTTTTCACAGTCTCTAACAGTAATCCACGACTTCTTATTCTCTTTG AAAGAAAGCCCTGAAAAGTTTCAGATTGAAGCCAATTTTCCCCGGAGGGTGCTGCCCTGC ATTCCTTCAGAGGAGTGGCCCAACCCCCCCACACTGCAGGAGGCCGGACTCAGCCACACA GAAGTTCTCTTTGTTCAGGACCTAACAGATGAATGACACTTTTTTTCCTCTCCTCCTCTC CCACCCCAATCCCTAAAAGAAATG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 209-346, gnl|bosTau2|chr7 (26131638-26131775) | |
| 209-346, gnl|canFam2|chr26 (21930503-21930364) | |
| 209-346, gnl|canFam2|chr4 (40029891-40029677) | |
| 209-346, gnl|dasNov1|scaffold_48037 (9110-9248) | |
| 209-346, gnl|dasNov1|scaffold_48037 (9281-9069) | |
| 209-346, gnl|echTel1|scaffold_304835 (48611-48749) | |
| 209-346, gnl|echTel1|scaffold_304835 (48779-48571) | |
| 209-346, gnl|fr1|chrUn (127363335-127363547) | |
| 209-346, gnl|fr1|chrUn (127363505-127363299) | |
| 209-346, gnl|galGal2|chr13 (9385084-9385217) | |
| 209-346, gnl|galGal2|chr13 (9385253-9385045) | |
| 209-346, gnl|hg17|chr10 (93516682-93516821) | |
| 209-346, gnl|hg17|chr5 (175845927-175846139) | |
| 209-346, gnl|Hg17|chr5 (175845960-175846097) | |
| 209-346, gnl|loxAfr1|scaffold_71534 (4691-4553) | |
| 209-346, gnl|loxAfr1|scaffold_71534 (4523-4734) | |
| 209-346, gnl|mm7|chr13 (53725820-53725683) | |
| 209-346, gnl|mm7|chr13 (53725648-53725853) | |
| 209-346, gnl|Mm7|chr13 (53725684-53725821) | |
| 209-346, gnl|monDom2|scaffold_6 (18735881-18736018) | |
| 209-346, gnl|monDom2|scaffold_6 (18736057-18735837) | |
| 209-346, gnl|oryCun1|scaffold_122464 (15542-15678) | |
| 209-346, gnl|oryCun1|scaffold_122464 (15709-15498) | |
| 209-346, gnl|panTro1|chr4 (183299753-183299965) | |
| 209-346, gnl|panTro1|chr8 (95242860-95242999) | |
| 209-346, gnl|rheMac2|chr6 (172966910-172967122) | |
| 209-346, gnl|rheMac2|chr9 (91242813-91242952) | |
| 209-346, gnl|rn3|chr17 (16030705-16030842) | |
| 209-346, gnl|rn3|chr17 (16030878-16030671) | |
| 209-346, gnl|xenTro1|scaffold_1854 (64131-64270) | |
| 209-346, gnl|xenTro1|scaffold_1854 (64291-64085) | |
| 421-562, gnl|bosTau2|chr7 (26135407-26135548) | |
| 421-562, gnl|canFam2|chr4 (40025096-40024902) | |
| 421-562, gnl|dasNov1|scaffold_48037 (5185-4990) | |
| 421-562, gnl|echTel1|scaffold_304835 (44532-44348) | |
| 421-562, gnl|fr1|chrUn (127363026-127362834) | |
| 421-562, gnl|galGal2|chr13 (9383290-9383103) | |
| 421-562, gnl|hg17|chr5 (175851755-175851950) | |
| 421-562, gnl|Hg17|chr5 (175851799-175851940) | |
| 421-562, gnl|mm7|chr13 (53732514-53732708) | |
| 421-562, gnl|Mm7|chr13 (53732557-53732698) | |
| 421-562, gnl|monDom2|scaffold_6 (18726903-18726709) | |
| 421-562, gnl|oryCun1|scaffold_122464 (7536-7340) | |
| 421-562, gnl|panTro1|chr4 (183305562-183305757) | |
| 421-562, gnl|rheMac2|chr6 (172972354-172972549) | |
| 421-562, gnl|rn3|chr17 (16024404-16024210) | |
| 421-562, gnl|tetNig1|chr1 (2808665-2808495) | |
| 421-562, gnl|xenTro1|scaffold_1854 (63936-63739) | |
| 739-918, gnl|bosTau2|chr7 (26139149-26139328) | |
| 739-918, gnl|canFam2|chr26 (21931026-21930871) | |
| 739-918, gnl|dasNov1|scaffold_48037 (1472-1642) | |
| 739-918, gnl|echTel1|scaffold_304835 (40267-40437) | |
| 739-918, gnl|fr1|chrUn (127361956-127362132) | |
| 739-918, gnl|galGal2|chr13 (9379868-9380043) | |
| 739-918, gnl|hg17|chr10 (93516112-93516288) | |
| 739-918, gnl|Hg17|chr5 (175856092-175856271) | |
| 739-918, gnl|mm7|chr13 (53736486-53736316) | |
| 739-918, gnl|Mm7|chr13 (53736309-53736488) | |
| 739-918, gnl|monDom2|scaffold_6 (18716511-18716681) | |
| 739-918, gnl|oryCun1|scaffold_122464 (3779-3954) | |
| 739-918, gnl|panTro1|chr8 (95242290-95242466) | |
| 739-918, gnl|rheMac2|chr9 (91242250-91242426) | |
| 739-918, gnl|rn3|chr17 (16020518-16020693) | |
| 739-918, gnl|tetNig1|chr1 (2807652-2807822) | |
| 739-918, gnl|xenTro1|scaffold_1854 (62633-62809) | |
| 1234-1464, gnl|bosTau2|chr7 (26147128-26147356) | |
| 1234-1464, gnl|Hg17|chr5 (175866375-175866604) | |
| 1234-1464, gnl|Mm7|chr13 (53745221-53745447) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 209-346, gnl|bosTau2|chr7 (26131638-26131775) | |
| 209-346, gnl|canFam2|chr26 (21930503-21930364) | |
| 209-346, gnl|canFam2|chr4 (40029891-40029677) | |
| 209-346, gnl|dasNov1|scaffold_48037 (9110-9248) | |
| 209-346, gnl|dasNov1|scaffold_48037 (9281-9069) | |
| 209-346, gnl|echTel1|scaffold_304835 (48611-48749) | |
| 209-346, gnl|echTel1|scaffold_304835 (48779-48571) | |
| 209-346, gnl|fr1|chrUn (127363335-127363547) | |
| 209-346, gnl|fr1|chrUn (127363505-127363299) | |
| 209-346, gnl|galGal2|chr13 (9385084-9385217) | |
| 209-346, gnl|galGal2|chr13 (9385253-9385045) | |
| 209-346, gnl|hg17|chr10 (93516682-93516821) | |
| 209-346, gnl|hg17|chr5 (175845927-175846139) | |
| 209-346, gnl|Hg17|chr5 (175845960-175846097) | |
| 209-346, gnl|loxAfr1|scaffold_71534 (4691-4553) | |
| 209-346, gnl|loxAfr1|scaffold_71534 (4523-4734) | |
| 209-346, gnl|mm7|chr13 (53725820-53725683) | |
| 209-346, gnl|mm7|chr13 (53725648-53725853) | |
| 209-346, gnl|Mm7|chr13 (53725684-53725821) | |
| 209-346, gnl|monDom2|scaffold_6 (18735881-18736018) | |
| 209-346, gnl|monDom2|scaffold_6 (18736057-18735837) | |
| 209-346, gnl|oryCun1|scaffold_122464 (15542-15678) | |
| 209-346, gnl|oryCun1|scaffold_122464 (15709-15498) | |
| 209-346, gnl|panTro1|chr4 (183299753-183299965) | |
| 209-346, gnl|panTro1|chr8 (95242860-95242999) | |
| 209-346, gnl|rheMac2|chr6 (172966910-172967122) | |
| 209-346, gnl|rheMac2|chr9 (91242813-91242952) | |
| 209-346, gnl|rn3|chr17 (16030705-16030842) | |
| 209-346, gnl|rn3|chr17 (16030878-16030671) | |
| 209-346, gnl|xenTro1|scaffold_1854 (64131-64270) | |
| 209-346, gnl|xenTro1|scaffold_1854 (64291-64085) | |
| 421-562, gnl|bosTau2|chr7 (26135407-26135548) | |
| 421-562, gnl|canFam2|chr4 (40025096-40024902) | |
| 421-562, gnl|dasNov1|scaffold_48037 (5185-4990) | |
| 421-562, gnl|echTel1|scaffold_304835 (44532-44348) | |
| 421-562, gnl|fr1|chrUn (127363026-127362834) | |
| 421-562, gnl|galGal2|chr13 (9383290-9383103) | |
| 421-562, gnl|hg17|chr5 (175851755-175851950) | |
| 421-562, gnl|Hg17|chr5 (175851799-175851940) | |
| 421-562, gnl|mm7|chr13 (53732514-53732708) | |
| 421-562, gnl|Mm7|chr13 (53732557-53732698) | |
| 421-562, gnl|monDom2|scaffold_6 (18726903-18726709) | |
| 421-562, gnl|oryCun1|scaffold_122464 (7536-7340) | |
| 421-562, gnl|panTro1|chr4 (183305562-183305757) | |
| 421-562, gnl|rheMac2|chr6 (172972354-172972549) | |
| 421-562, gnl|rn3|chr17 (16024404-16024210) | |
| 421-562, gnl|tetNig1|chr1 (2808665-2808495) | |
| 421-562, gnl|xenTro1|scaffold_1854 (63936-63739) | |
| 739-918, gnl|bosTau2|chr7 (26139149-26139328) | |
| 739-918, gnl|canFam2|chr26 (21931026-21930871) | |
| 739-918, gnl|dasNov1|scaffold_48037 (1472-1642) | |
| 739-918, gnl|echTel1|scaffold_304835 (40267-40437) | |
| 739-918, gnl|fr1|chrUn (127361956-127362132) | |
| 739-918, gnl|galGal2|chr13 (9379868-9380043) | |
| 739-918, gnl|hg17|chr10 (93516112-93516288) | |
| 739-918, gnl|Hg17|chr5 (175856092-175856271) | |
| 739-918, gnl|mm7|chr13 (53736486-53736316) | |
| 739-918, gnl|Mm7|chr13 (53736309-53736488) | |
| 739-918, gnl|monDom2|scaffold_6 (18716511-18716681) | |
| 739-918, gnl|oryCun1|scaffold_122464 (3779-3954) | |
| 739-918, gnl|panTro1|chr8 (95242290-95242466) | |
| 739-918, gnl|rheMac2|chr9 (91242250-91242426) | |
| 739-918, gnl|rn3|chr17 (16020518-16020693) | |
| 739-918, gnl|tetNig1|chr1 (2807652-2807822) | |
| 739-918, gnl|xenTro1|scaffold_1854 (62633-62809) | |
| 1234-1464, gnl|bosTau2|chr7 (26147128-26147356) | |
| 1234-1464, gnl|Hg17|chr5 (175866375-175866604) | |
| 1234-1464, gnl|Mm7|chr13 (53745221-53745447) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cmu (0.186393) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ret (0.128733) | |
| clu (0.119646) | |
| jca (0.11396) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.186393) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ret (0.128733) | |
| clu (0.119646) | |
| jca (0.11396) |