Non-Coding RNA Search

Ss1.1-Tra1-TCH01G020003.5

Sequence:


               
               ATACATGGGCGCGCGTGCGCACACGCGCCTGGGGCGGTGGTTGGAGGCTACCGGGACACG
GGGGCTGGCTGTCGGGCGCGGCGATGGGTGAGGCGGACGCGGGGACGCCTTCTTTCGAGA
TGACCTGGAGCAGCACGACAAGCAGTGGCTACTGCAGCCAGGAGGACTCGGACTCAGAGC
TCGAGCAGTACTTCACCGCGCGTACCTCGCTGGCTCGGAGGCCGCGCCGGGACCAGGTGG
GGGCCAGGGGTTGTAGGAGGCGGGCTGCGGGCGGGCGCTGGGACCTCGCCCTTCCCCGGT
AAGTTGAGGTGTCGGCACTTTGTGGGCAGCTCCGCCCTCCCGTCAACGTGGATCCGGGAT
TCGACCCTGGCCAGCCCTCTGAACCGTGTGTTGGGCTTTCAGCGTGTTGGTACCAGAGGT
GGCAGCTAAGTAGTTTGGGGTAGACGGGGGACGGGCGTTACCCACCCATTACTGAGGCTC
ACTGCGCAGTCTGGACTAACACCTTGATTTCCGCGGGCTGGCGCTCCTCCCATTTCCCAC
CCTCGCTCTGGGGATCGCCCGGAATTGAGAAGTGTATTTGGGAGACCAGCAGAGGGTCTG
GGCCCCTCCATTTGCCCTCCTGAATTGAGCCAATTTAGTCCCCACCTCTTGGCCTGTTAC
CAGCTGCTGGAATGTGAAAGATTCTGATGCTCCTTCCTCTGAAGTGTATCAGGAGTGCTC
GCTTGGGCAGCACATCTACTGAAATTAGAGCAGACCTAGAGAAAGGGGATTTGGGGATGG
ATGGGAAGGAAGTTTTATTTTGGACTGTAAGCATCCAAGAGCACTTTATCCACAAGAAGT
AAGGAAAGTTAGATTGAGAGTGGCCAAGAGAAATAGGAGTTACTAATCCAGGACTAAGGT
GTGGTGCCGGAACAGCTGTGCCTCTCACAATCTCCCAGTTGTCCCCCTTATCGGAGACCT
CTATGCTCTGTGACGTCAGTGTGACCACTGGGTTCAAATAACAGTTCTGGAGCTGATACA
TCTCAGAGAAGCACCCTGGCCAAGGCATCAGGAAAGAGTGATGGGTACCACGAAGTGAAG
TTACTAAACTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACATGGGCGCGCGTGCGCACACGCGCCTGGGGCGGTGGTTGGAGGCTACCGGGACACG
GGGGCTGGCTGTCGGGCGCGGCGATGGGTGAGGCGGACGCGGGGACGCCTTCTTTCGAGA
TGACCTGGAGCAGCACGACAAGCAGTGGCTACTGCAGCCAGGAGGACTCGGACTCAGAGC
TCGAGCAGTACTTCACCGCGCGTACCTCGCTGGCTCGGAGGCCGCGCCGGGACCAGGTGG
GGGCCAGGGGTTGTAGGAGGCGGGCTGCGGGCGGGCGCTGGGACCTCGCCCTTCCCCGGT
AAGTTGAGGTGTCGGCACTTTGTGGGCAGCTCCGCCCTCCCGTCAACGTGGATCCGGGAT
TCGACCCTGGCCAGCCCTCTGAACCGTGTGTTGGGCTTTCAGCGTGTTGGTACCAGAGGT
GGCAGCTAAGTAGTTTGGGGTAGACGGGGGACGGGCGTTACCCACCCATTACTGAGGCTC
ACTGCGCAGTCTGGACTAACACCTTGATTTCCGCGGGCTGGCGCTCCTCCCATTTCCCAC
CCTCGCTCTGGGGATCGCCCGGAATTGAGAAGTGTATTTGGGAGACCAGCAGAGGGTCTG
GGCCCCTCCATTTGCCCTCCTGAATTGAGCCAATTTAGTCCCCACCTCTTGGCCTGTTAC
CAGCTGCTGGAATGTGAAAGATTCTGATGCTCCTTCCTCTGAAGTGTATCAGGAGTGCTC
GCTTGGGCAGCACATCTACTGAAATTAGAGCAGACCTAGAGAAAGGGGATTTGGGGATGG
ATGGGAAGGAAGTTTTATTTTGGACTGTAAGCATCCAAGAGCACTTTATCCACAAGAAGT
AAGGAAAGTTAGATTGAGAGTGGCCAAGAGAAATAGGAGTTACTAATCCAGGACTAAGGT
GTGGTGCCGGAACAGCTGTGCCTCTCACAATCTCCCAGTTGTCCCCCTTATCGGAGACCT
CTATGCTCTGTGACGTCAGTGTGACCACTGGGTTCAAATAACAGTTCTGGAGCTGATACA
TCTCAGAGAAGCACCCTGGCCAAGGCATCAGGAAAGAGTGATGGGTACCACGAAGTGAAG
TTACTAAACTAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-413, gnl|bosTau2|chr22 (38613776-38613363)
               

               
               1-413, gnl|Hg17|chr3 (50349838-50349420)
               

               
               1-413, gnl|Mm7|chr9 (107284141-107284580)
               


               
               592-996, gnl|bosTau2|chr22 (38613098-38612679)
               

               
               592-996, gnl|Hg17|chr3 (50349165-50348812)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-413, gnl|bosTau2|chr22 (38613776-38613363)
               

               
               1-413, gnl|Hg17|chr3 (50349838-50349420)
               

               
               1-413, gnl|Mm7|chr9 (107284141-107284580)
               


               
               592-996, gnl|bosTau2|chr22 (38613098-38612679)
               

               
               592-996, gnl|Hg17|chr3 (50349165-50348812)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               jca (0.11396)

	1-413, gnl\|bosTau2\|chr22 (38613776-38613363)
	1-413, gnl\|Hg17\|chr3 (50349838-50349420)
	1-413, gnl\|Mm7\|chr9 (107284141-107284580)

	592-996, gnl\|bosTau2\|chr22 (38613098-38612679)
	592-996, gnl\|Hg17\|chr3 (50349165-50348812)