Non-Coding RNA Search

Ss1.1-Tra1-TCH01G020019.5

Sequence:


               
               TAGCACTCGGCGCAAGAGCATACGTGCCCGCACTCCAGGAAGACGCAAGAGCGGAAGTTG
CTCAGGCACACGACGCAGGCGCTCTTGAGGCTCTCCCGGTCCTCCGGCTGCGCGCCACTC
AGCAGACGCGCCTCGTGCTCGCGGAACTCCTCCTCCAGCTGCTTGAGGCGCAGTCGCTCC
TGCCGCTGCAGATACTGCTTCCGGAGGATGAAGAAGAGGGTGGCGCACGTGGCAAAGCCA
AACACCAGCATCAGGACCTTCCAGAGCCTGACGCTCGACTCCTGCCTCTGCAGCAGGCTG
TCGAAGTCCTGGCTGCTCAGATAGTACTGCATGCCCTGCTTGGGGGGCTGCAGGCGGACG
GCGTTGTTGTCCAGGACCAGCTCGCCCACCCCCGTGAGGGTGGCCCCCACCTTCAGCATC
TCCTCCGTCTCCTGGATGCCTTTGGGCCGCTCCCCGCTGATGTAGTGGCCGATCACGTCC
GTGAAGGACTGGATGGAGGGGTGGAACTTCTCATACACGGTCTCCAGGCCCAGATCCAGC
GAGTCCAGGGGCTTCAGCACCCGCACAGCCACGTCCACGCCGTCCTCGTGCGGCACCAGG
TCAAAGGGCACCGTGTTGGTCCTTTGGTGAATGATCTTGGAACAGTCATTCCAAAGGTGG
GTTGTCCGATTCCACACCATCTTGTGCTCCTGAAGCGTCAGCCGCTGAATCACCCCCTTG
CAATTTTCTACAAACTGGCTGTTAAGTGTTTCTTTAACAGATCGAACAGCTCCTTCGATA
ACAGCATAAGGCACACATTTTCCTGGAGCTTCTGAAAGAATACTCTTTAGGTCTTCACCC
AAGTGGATTCTTTTAGCTCCCTTGAGCTCTTGGGCGACCTGGGCCTTCTGCCGGTACACG
GAGTACAGGACGGCGGTGACGACAGAGCTGGTGCCTAGGAGGATGAACTGGCCTAGAGAG
GGCCGCCCCCCGCTCTCCATGGCTGAGCCGAGCCCTGGGTGCAGACGGGGACGCCGCGGA
GGGCTGGCTCCGCGACCGTCACCCGCCGCCTGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCACTCGGCGCAAGAGCATACGTGCCCGCACTCCAGGAAGACGCAAGAGCGGAAGTTG
CTCAGGCACACGACGCAGGCGCTCTTGAGGCTCTCCCGGTCCTCCGGCTGCGCGCCACTC
AGCAGACGCGCCTCGTGCTCGCGGAACTCCTCCTCCAGCTGCTTGAGGCGCAGTCGCTCC
TGCCGCTGCAGATACTGCTTCCGGAGGATGAAGAAGAGGGTGGCGCACGTGGCAAAGCCA
AACACCAGCATCAGGACCTTCCAGAGCCTGACGCTCGACTCCTGCCTCTGCAGCAGGCTG
TCGAAGTCCTGGCTGCTCAGATAGTACTGCATGCCCTGCTTGGGGGGCTGCAGGCGGACG
GCGTTGTTGTCCAGGACCAGCTCGCCCACCCCCGTGAGGGTGGCCCCCACCTTCAGCATC
TCCTCCGTCTCCTGGATGCCTTTGGGCCGCTCCCCGCTGATGTAGTGGCCGATCACGTCC
GTGAAGGACTGGATGGAGGGGTGGAACTTCTCATACACGGTCTCCAGGCCCAGATCCAGC
GAGTCCAGGGGCTTCAGCACCCGCACAGCCACGTCCACGCCGTCCTCGTGCGGCACCAGG
TCAAAGGGCACCGTGTTGGTCCTTTGGTGAATGATCTTGGAACAGTCATTCCAAAGGTGG
GTTGTCCGATTCCACACCATCTTGTGCTCCTGAAGCGTCAGCCGCTGAATCACCCCCTTG
CAATTTTCTACAAACTGGCTGTTAAGTGTTTCTTTAACAGATCGAACAGCTCCTTCGATA
ACAGCATAAGGCACACATTTTCCTGGAGCTTCTGAAAGAATACTCTTTAGGTCTTCACCC
AAGTGGATTCTTTTAGCTCCCTTGAGCTCTTGGGCGACCTGGGCCTTCTGCCGGTACACG
GAGTACAGGACGGCGGTGACGACAGAGCTGGTGCCTAGGAGGATGAACTGGCCTAGAGAG
GGCCGCCCCCCGCTCTCCATGGCTGAGCCGAGCCCTGGGTGCAGACGGGGACGCCGCGGA
GGGCTGGCTCCGCGACCGTCACCCGCCGCCTGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55664521|emb|CAH73470.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55664521|emb|CAH73470.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               240-356, - strand, RNAz p=0.923599
               

               
               437-556, + strand, RNAz p=0.728577

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-356, - strand, RNAz p=0.923599
               

               
               437-556, + strand, RNAz p=0.728577

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-652, gnl|bosTau2|chr17 (41884382-41885027)
               

               
               1-652, gnl|Hg17|chr1 (20572568-20573219)
               

               
               1-652, gnl|Mm7|chr4 (137818042-137817391)
               


               
               860-998, gnl|bosTau2|chr17 (41890545-41890683)
               

               
               860-998, gnl|Hg17|chr1 (20579703-20579841)
               

               
               860-998, gnl|Mm7|chr4 (137813321-137813188)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-652, gnl|bosTau2|chr17 (41884382-41885027)
               

               
               1-652, gnl|Hg17|chr1 (20572568-20573219)
               

               
               1-652, gnl|Mm7|chr4 (137818042-137817391)
               


               
               860-998, gnl|bosTau2|chr17 (41890545-41890683)
               

               
               860-998, gnl|Hg17|chr1 (20579703-20579841)
               

               
               860-998, gnl|Mm7|chr4 (137813321-137813188)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ebs (0.118301)

	240-356, - strand, RNAz p=0.923599
	437-556, + strand, RNAz p=0.728577

	1-652, gnl\|bosTau2\|chr17 (41884382-41885027)
	1-652, gnl\|Hg17\|chr1 (20572568-20573219)
	1-652, gnl\|Mm7\|chr4 (137818042-137817391)

	860-998, gnl\|bosTau2\|chr17 (41890545-41890683)
	860-998, gnl\|Hg17\|chr1 (20579703-20579841)
	860-998, gnl\|Mm7\|chr4 (137813321-137813188)