Non-Coding RNA Search

Ss1.1-Tra1-TCH01G020026.5.5

Sequence:


               
               GGTATTATTTGAGCTGAGTCTTGAAGAATTAGTTTTGGTTTGTTCATTTGGAAGAGAATT
ACCTGTTTATAGAAAACTGTATGTAAATAATGGAGATAGATGGTGTAAATTTTATTTTAT
TTTTATTTTTATATTTATTTTTTTGTCTTTTTGCCTTTTCTAGGGCCGCTCCCATGGCAT
GTGGAGGTTCCAGGGCTAGGGGTCTAATTGGCGCTGTAGCCGCCAGCCTACGCCAGAGCC
ATAGCAACGCCAGATTCAAGCCGCGTCTGTGACCTACACCACAGCGCACGGCAACGCCAG
ATCCTGAACCCACTGAGCAAGGCCAGGGACTGAACTCGCAACCTCATGGGTCCTAGTCTG
ATTCGTTAACCACTGAGCCATGACGGGAACTCCAAGTAAATTTTAGAAGATCACTTAAAT
AATTTGTGTTTTCTCATTCCCCTCCTCAGGCTTTAGAAGAGAACTCAAGAACTTGGAAGT
CGACTGTAAATCTCACGAGTCCCACTCAGAATCACATCTACAAATAAAAAATCCTTTGAT
AAAAAGGTCACATGTACGTGAAACCAATGGAAAGTTATTCTCATCGTCCAGTCCACAGAT
ACCCAAGGACCATACAGCAAGGGAGCATGCCTACCTGTCAAATGAACAGAAACTTGAAAA
ATCAAGTGAATGCAAATTTTCTGAGTGGCCTAATGTAGAAAATCCTGAGAGAACAGGTTT
GCTTTTTCACGTTGATGATAATTCTGCTTCTGGAAAGAGAGTGAACAGTAATGAAACAGT
GTCACCGTCTTCATTGCAGTCTTCTCTTATGAGAACTGTGGGGTTAAAGCCTGAAACTGC
TCCCGTACTCCAGCAGCAGAATATGACAGAACAATGTTACTCTGAGAACTCTCTATCCAG
GGAAAAATTAATTCAGTCAACCCGCAGATCTGATGGTTGTCAGATGCCAAAACCTTTTTG
CCAGAATCCACCACCTCCTCTGCCACCAAAGAAGTATGTCAAGACCAGTGTGCCACAGTC
AGAGAAAAACGATTCTACACCTGATGTGAAACTAACAGAGATGTTTAAAACTAATTGTTC
TAATCTTCCAAAGCATAGTTTAAGTACAGCTTCAGGACCAGGTTTAGAAGTGAATGCATA
TATGAATGATGAAAGACCAAAGGAAACATTTCAAGCAAAGGAGGATTTTAGCCACATACC
ATCCAGCTTTTCAACTAATGATTTTCAGGCAGACTCAAGTACAGTTGCAGGTGCTTTATG
CCAACCAGAAATAGACTCCGGTTCTTCTTGTCCAAATGAGACAGTTTCATTAACTACCTA
TTTTTCGGTTGATAACTGCATGACTGATACATATAGATTGAAATACCATCAGAGGCCCAA
GCTCTGTTTTCCAGAGAACAGTGGCTTTTGTAATAATTCCATATCTCAGAGTGAAAGAGG
GCTAGGACCTGTGTCACATACTAATCTTGGTTCAAACTGCCCTTCCAAGCAAAGATATAA
ACCTGGTATACATTGTAGTAGATAAATGATGAAACTGTCAGGCTTTTACTTGTCAGAGGC
CATTAACTAGGAATTGACTGACCAAACCTAATGATATATGAAATTCAAACCATGTCATTT
TAAGTCATTAGTCACTTTATCTTTCTGTACAGATTCTTTCTTTCATGAAGACTAGCTTAT
TGGATATTTTGGTTATTCCCTCTTTATTGTTTTGGAATGCCTCAAAAAAATAGAAATTCA
AGGAGTTCCTGTTTTGGCTTAGTGGATTAAGACCCTGACGTTGTGTCTGCAAGAAAGTGG
TTTCGATCCCTGGCCTTGCTCAGGGTTAAGGAACAGTGGGTTAAGGATCCAGAGTTGCTG
CAAGCCGCAGTGTAGGTCGCAGATGCAGCTCAGTGTTGCCACGTGGCTGTGGTGCAGGCC
GGCAGCTGCAGTTACAATTCGCCTGGGAACTTCTATATGCCACAGGTGCCACCATAAAAA
GGAAGAAAAAAAGAAAAAGAAAATGAGGAGGTATGCAGAGTCATTCATCATACGCTGCAG
TTGAGTAAAAATGTAATTTGTTCCTTTCTTTTTGACTGCTAGACCCATAAGTATTAAACT
AACCAGTACTCATATGTAGATTGGTAATCTGTGCTAACTGAAAAATAGCAGGAGATGGGT
AGTTCGTGTAGTCAAAGCAGTATTTGCTTTGTGAGGAAGCACTTTCCAGTGGGTAGCCAA
AAGAGGACTTCACCCATTTACTTTTGACTTCTGTGATAGTCTACTACATACGGTCCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTATTATTTGAGCTGAGTCTTGAAGAATTAGTTTTGGTTTGTTCATTTGGAAGAGAATT
ACCTGTTTATAGAAAACTGTATGTAAATAATGGAGATAGATGGTGTAAATTTTATTTTAT
TTTTATTTTTATATTTATTTTTTTGTCTTTTTGCCTTTTCTAGGGCCGCTCCCATGGCAT
GTGGAGGTTCCAGGGCTAGGGGTCTAATTGGCGCTGTAGCCGCCAGCCTACGCCAGAGCC
ATAGCAACGCCAGATTCAAGCCGCGTCTGTGACCTACACCACAGCGCACGGCAACGCCAG
ATCCTGAACCCACTGAGCAAGGCCAGGGACTGAACTCGCAACCTCATGGGTCCTAGTCTG
ATTCGTTAACCACTGAGCCATGACGGGAACTCCAAGTAAATTTTAGAAGATCACTTAAAT
AATTTGTGTTTTCTCATTCCCCTCCTCAGGCTTTAGAAGAGAACTCAAGAACTTGGAAGT
CGACTGTAAATCTCACGAGTCCCACTCAGAATCACATCTACAAATAAAAAATCCTTTGAT
AAAAAGGTCACATGTACGTGAAACCAATGGAAAGTTATTCTCATCGTCCAGTCCACAGAT
ACCCAAGGACCATACAGCAAGGGAGCATGCCTACCTGTCAAATGAACAGAAACTTGAAAA
ATCAAGTGAATGCAAATTTTCTGAGTGGCCTAATGTAGAAAATCCTGAGAGAACAGGTTT
GCTTTTTCACGTTGATGATAATTCTGCTTCTGGAAAGAGAGTGAACAGTAATGAAACAGT
GTCACCGTCTTCATTGCAGTCTTCTCTTATGAGAACTGTGGGGTTAAAGCCTGAAACTGC
TCCCGTACTCCAGCAGCAGAATATGACAGAACAATGTTACTCTGAGAACTCTCTATCCAG
GGAAAAATTAATTCAGTCAACCCGCAGATCTGATGGTTGTCAGATGCCAAAACCTTTTTG
CCAGAATCCACCACCTCCTCTGCCACCAAAGAAGTATGTCAAGACCAGTGTGCCACAGTC
AGAGAAAAACGATTCTACACCTGATGTGAAACTAACAGAGATGTTTAAAACTAATTGTTC
TAATCTTCCAAAGCATAGTTTAAGTACAGCTTCAGGACCAGGTTTAGAAGTGAATGCATA
TATGAATGATGAAAGACCAAAGGAAACATTTCAAGCAAAGGAGGATTTTAGCCACATACC
ATCCAGCTTTTCAACTAATGATTTTCAGGCAGACTCAAGTACAGTTGCAGGTGCTTTATG
CCAACCAGAAATAGACTCCGGTTCTTCTTGTCCAAATGAGACAGTTTCATTAACTACCTA
TTTTTCGGTTGATAACTGCATGACTGATACATATAGATTGAAATACCATCAGAGGCCCAA
GCTCTGTTTTCCAGAGAACAGTGGCTTTTGTAATAATTCCATATCTCAGAGTGAAAGAGG
GCTAGGACCTGTGTCACATACTAATCTTGGTTCAAACTGCCCTTCCAAGCAAAGATATAA
ACCTGGTATACATTGTAGTAGATAAATGATGAAACTGTCAGGCTTTTACTTGTCAGAGGC
CATTAACTAGGAATTGACTGACCAAACCTAATGATATATGAAATTCAAACCATGTCATTT
TAAGTCATTAGTCACTTTATCTTTCTGTACAGATTCTTTCTTTCATGAAGACTAGCTTAT
TGGATATTTTGGTTATTCCCTCTTTATTGTTTTGGAATGCCTCAAAAAAATAGAAATTCA
AGGAGTTCCTGTTTTGGCTTAGTGGATTAAGACCCTGACGTTGTGTCTGCAAGAAAGTGG
TTTCGATCCCTGGCCTTGCTCAGGGTTAAGGAACAGTGGGTTAAGGATCCAGAGTTGCTG
CAAGCCGCAGTGTAGGTCGCAGATGCAGCTCAGTGTTGCCACGTGGCTGTGGTGCAGGCC
GGCAGCTGCAGTTACAATTCGCCTGGGAACTTCTATATGCCACAGGTGCCACCATAAAAA
GGAAGAAAAAAAGAAAAAGAAAATGAGGAGGTATGCAGAGTCATTCATCATACGCTGCAG
TTGAGTAAAAATGTAATTTGTTCCTTTCTTTTTGACTGCTAGACCCATAAGTATTAAACT
AACCAGTACTCATATGTAGATTGGTAATCTGTGCTAACTGAAAAATAGCAGGAGATGGGT
AGTTCGTGTAGTCAAAGCAGTATTTGCTTTGTGAGGAAGCACTTTCCAGTGGGTAGCCAA
AAGAGGACTTCACCCATTTACTTTTGACTTCTGTGATAGTCTACTACATACGGTCCCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WVQ5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WVQ5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2145-2279, - strand, RNAz p=0.999638

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2145-2279, - strand, RNAz p=0.999638

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               545-1746, gnl|bosTau2|chr6 (3060806-3062016)
               

               
               545-1746, gnl|Hg17|chr4 (120571094-120572303)
               

               
               545-1746, gnl|Mm7|chr3 (122773226-122772154)
               


               
               1991-2279, gnl|bosTau2|chr6 (3061995-3062287)
               

               
               1991-2279, gnl|Hg17|chr4 (120572283-120572576)
               

               
               1991-2279, gnl|Mm7|chr3 (122772166-122771912)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               545-1746, gnl|bosTau2|chr6 (3060806-3062016)
               

               
               545-1746, gnl|Hg17|chr4 (120571094-120572303)
               

               
               545-1746, gnl|Mm7|chr3 (122773226-122772154)
               


               
               1991-2279, gnl|bosTau2|chr6 (3061995-3062287)
               

               
               1991-2279, gnl|Hg17|chr4 (120572283-120572576)
               

               
               1991-2279, gnl|Mm7|chr3 (122772166-122771912)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               pan (0.23596)
               

               
               med (0.232504)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               med (0.232504)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	545-1746, gnl\|bosTau2\|chr6 (3060806-3062016)
	545-1746, gnl\|Hg17\|chr4 (120571094-120572303)
	545-1746, gnl\|Mm7\|chr3 (122773226-122772154)

	1991-2279, gnl\|bosTau2\|chr6 (3061995-3062287)
	1991-2279, gnl\|Hg17\|chr4 (120572283-120572576)
	1991-2279, gnl\|Mm7\|chr3 (122772166-122771912)

	pan (0.23596)
	med (0.232504)
	mcp (0.170648)
	tbr (0.154178)
	bfe (0.149858)
	fat (0.147427)
	spl (0.143184)
	ste (0.135208)
	tra (0.123092)
	jca (0.11396)
	cty (0.10408)