Ss1.1-Tra1-TCH01G030063.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACCTCTGGGCTCAAGCCATCCCACCTGCCCAAAGTGGCAACCTCTGCTAATAAACTCTC AGGCAACCTGGGAACAGGGAAAGGAGGCCATATGTCTTGCCTGGCCTGTCCTGGCTCAGA TTCAGAAAAAGAAGCAGAACAGGAGCAGAAACAAAGGCATTGATTCTCGTGTATGTGCTT CCTTGAGGGAATGCTCTCAATAGAAGGGAAGGAAGGGAAGCAGGATAGGGCAAAGGGAAA AGGTCTAAGCACATTTGTGGTCTAAGCTAGAGACCAGCTTCAGCCTCATCTCCCAGGAGC AGGAATTGCACTATAGAGTTGATCCCACATGAAAGCATATGCTGGCTTTTTGCATCACTG GGTCAGTCAGTCATTAGCTATGGGCTGCCCCTGGGGATGGGGGCATAACCTTCTGGGTTG GGTGATCCCCATTGACTCAGGGACCAGCTTTGAGCTGCCCTTAGCAGCCGACACTCATGG TAGCTGGGGAAGGGCATTCCAGCCCAGTTAAAGGGATCTCAGTGGGTCATCAACAACACC CACTACACCCACCAAGCTCCCCCTTACATTGCTGCCGACATGGAGGGTATTCACAATTTC TGCAGGTGTTCTGGCCACTTCCCGTCTAATCCACATGGAGACTGACTTGTAGGGTGGAGG TAGTCCCGTGAGCCTGCCACTCTAGTGACTTTTCCCACTCACTCTTGGCCATCTGCTGCT GGGATCCTCTCTCTGACTTGGCTAAAACTTAATGTTTGTGGTGATGTCTATCCTAGGGCT TATACTTTAATGGCATTTATTATGTACAATCCCCTTTCATGTAGGACAGCCAACATCATG ACGTCTAGGTTATAGCTTCTGTCTTCTATTCCCAAGTTTTATTTCTCCTTTTGGTTCACA TGTTCCCCATATTCCTACTAAATTCCTGCCCAACACTTCTCTCTCCACTCCTGTTAATAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACCTCTGGGCTCAAGCCATCCCACCTGCCCAAAGTGGCAACCTCTGCTAATAAACTCTC AGGCAACCTGGGAACAGGGAAAGGAGGCCATATGTCTTGCCTGGCCTGTCCTGGCTCAGA TTCAGAAAAAGAAGCAGAACAGGAGCAGAAACAAAGGCATTGATTCTCGTGTATGTGCTT CCTTGAGGGAATGCTCTCAATAGAAGGGAAGGAAGGGAAGCAGGATAGGGCAAAGGGAAA AGGTCTAAGCACATTTGTGGTCTAAGCTAGAGACCAGCTTCAGCCTCATCTCCCAGGAGC AGGAATTGCACTATAGAGTTGATCCCACATGAAAGCATATGCTGGCTTTTTGCATCACTG GGTCAGTCAGTCATTAGCTATGGGCTGCCCCTGGGGATGGGGGCATAACCTTCTGGGTTG GGTGATCCCCATTGACTCAGGGACCAGCTTTGAGCTGCCCTTAGCAGCCGACACTCATGG TAGCTGGGGAAGGGCATTCCAGCCCAGTTAAAGGGATCTCAGTGGGTCATCAACAACACC CACTACACCCACCAAGCTCCCCCTTACATTGCTGCCGACATGGAGGGTATTCACAATTTC TGCAGGTGTTCTGGCCACTTCCCGTCTAATCCACATGGAGACTGACTTGTAGGGTGGAGG TAGTCCCGTGAGCCTGCCACTCTAGTGACTTTTCCCACTCACTCTTGGCCATCTGCTGCT GGGATCCTCTCTCTGACTTGGCTAAAACTTAATGTTTGTGGTGATGTCTATCCTAGGGCT TATACTTTAATGGCATTTATTATGTACAATCCCCTTTCATGTAGGACAGCCAACATCATG ACGTCTAGGTTATAGCTTCTGTCTTCTATTCCCAAGTTTTATTTCTCCTTTTGGTTCACA TGTTCCCCATATTCCTACTAAATTCCTGCCCAACACTTCTCTCTCCACTCCTGTTAATAC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 108-215, - strand, RNAz p=0.664733 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 108-215, - strand, RNAz p=0.664733 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 2-417, gnl|bosTau2|chr10 (24403553-24403139) | |
| 2-417, gnl|canFam2|chrX (13644770-13645330) | |
| 2-417, gnl|echTel1|scaffold_322520 (39468-39931) | |
| 2-417, gnl|hg17|chrX (17372293-17372845) | |
| 2-417, gnl|Hg17|chrX (17372320-17372734) | |
| 2-417, gnl|loxAfr1|scaffold_758 (119027-119588) | |
| 2-417, gnl|Mm7|chrX (156739036-156738620) | |
| 2-417, gnl|oryCun1|scaffold_208386 (153457-152982) | |
| 2-417, gnl|panTro1|chrX (17965069-17965621) | |
| 2-417, gnl|rheMac2|chrX (15317809-15318361) | |
| 2-417, gnl|rn3|chrX (53632940-53633509) | |
| 664-960, gnl|bosTau2|chr10 (24402815-24402520) | |
| 664-960, gnl|canFam2|chrX (13645443-13646367) | |
| 664-960, gnl|dasNov1|scaffold_124503 (685-1564) | |
| 664-960, gnl|echTel1|scaffold_322520 (40045-40905) | |
| 664-960, gnl|hg17|chrX (17372951-17373841) | |
| 664-960, gnl|Hg17|chrX (17373037-17373321) | |
| 664-960, gnl|loxAfr1|scaffold_758 (119700-120567) | |
| 664-960, gnl|mm7|chrX (156738399-156737552) | |
| 664-960, gnl|Mm7|chrX (156738310-156738058) | |
| 664-960, gnl|monDom2|scaffold_25 (21867847-21866964) | |
| 664-960, gnl|oryCun1|scaffold_208386 (152883-151995) | |
| 664-960, gnl|panTro1|chrX (17965727-17966611) | |
| 664-960, gnl|rheMac2|chrX (15318467-15319366) | |
| 664-960, gnl|rn3|chrX (53633610-53634511) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-417, gnl|bosTau2|chr10 (24403553-24403139) | |
| 2-417, gnl|canFam2|chrX (13644770-13645330) | |
| 2-417, gnl|echTel1|scaffold_322520 (39468-39931) | |
| 2-417, gnl|hg17|chrX (17372293-17372845) | |
| 2-417, gnl|Hg17|chrX (17372320-17372734) | |
| 2-417, gnl|loxAfr1|scaffold_758 (119027-119588) | |
| 2-417, gnl|Mm7|chrX (156739036-156738620) | |
| 2-417, gnl|oryCun1|scaffold_208386 (153457-152982) | |
| 2-417, gnl|panTro1|chrX (17965069-17965621) | |
| 2-417, gnl|rheMac2|chrX (15317809-15318361) | |
| 2-417, gnl|rn3|chrX (53632940-53633509) | |
| 664-960, gnl|bosTau2|chr10 (24402815-24402520) | |
| 664-960, gnl|canFam2|chrX (13645443-13646367) | |
| 664-960, gnl|dasNov1|scaffold_124503 (685-1564) | |
| 664-960, gnl|echTel1|scaffold_322520 (40045-40905) | |
| 664-960, gnl|hg17|chrX (17372951-17373841) | |
| 664-960, gnl|Hg17|chrX (17373037-17373321) | |
| 664-960, gnl|loxAfr1|scaffold_758 (119700-120567) | |
| 664-960, gnl|mm7|chrX (156738399-156737552) | |
| 664-960, gnl|Mm7|chrX (156738310-156738058) | |
| 664-960, gnl|monDom2|scaffold_25 (21867847-21866964) | |
| 664-960, gnl|oryCun1|scaffold_208386 (152883-151995) | |
| 664-960, gnl|panTro1|chrX (17965727-17966611) | |
| 664-960, gnl|rheMac2|chrX (15318467-15319366) | |
| 664-960, gnl|rn3|chrX (53633610-53634511) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) |