Ss1.1-Tra1-TCH01G030099.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCGCACGCATTACAGGAGCTAGGCAGCTATAAAGTGAGAGGTACGAGGAGGCTGCACC TTCCACGCCAGCCCGCAGGCCCCAGCCCCGCCGTCTCCCGCTCACCTGCCCCATTGGAGC CCAGAGAGCCTATAGCTCCAGCCCACCATGTGTGGCATTTGGGCCCTCTTTGGCAGCGAT GACTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGGGGTCCAGATGCA TTTCGTTTTGAGAATGTCAACGGATATACCAACTGCTGCTTTGGATTTCACCGGTTGGCA GTGGTTGACCAGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCTTATTTGTGG CTCTGTTACAATGGTGAAATCTACAACCATAAGAAGCTGCAACACCATTTTGAATTTGAA TATCAGACAAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAG CAAACAGTTTGCATGTTGGATGGGGTGTTTGCCTTTATTTTACTGGATACTGCCAATAAG AAAGTGTTCCTGGGCAGAGATACCTATGGAGTCAGACCTTTATTTAAAGCCATGACAGAA GATGGATTTTTGGCTGTGTGTTCAGAAGCTAAAGGTCTCGTTAACTTGAAGCACTCCATG ACCCCTTTTTTAAAAGTGGAGCCTTTTCTCCCCGGACACTATGAAGTTTTGGATTTAAAG CCAAATGGCAAAGTCGCCTCAGTGGAAATAGTAAAATATCATCACTGTCGAGATGAGCCT CTGCACACCCTGTATGACAGCGTGGAAAAACTCTTCCCAGGTTTTGAGATAGAAGCTGTG AAGAGCAACCTCCGGATCCTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCGCACGCATTACAGGAGCTAGGCAGCTATAAAGTGAGAGGTACGAGGAGGCTGCACC TTCCACGCCAGCCCGCAGGCCCCAGCCCCGCCGTCTCCCGCTCACCTGCCCCATTGGAGC CCAGAGAGCCTATAGCTCCAGCCCACCATGTGTGGCATTTGGGCCCTCTTTGGCAGCGAT GACTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGGGGTCCAGATGCA TTTCGTTTTGAGAATGTCAACGGATATACCAACTGCTGCTTTGGATTTCACCGGTTGGCA GTGGTTGACCAGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCTTATTTGTGG CTCTGTTACAATGGTGAAATCTACAACCATAAGAAGCTGCAACACCATTTTGAATTTGAA TATCAGACAAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAG CAAACAGTTTGCATGTTGGATGGGGTGTTTGCCTTTATTTTACTGGATACTGCCAATAAG AAAGTGTTCCTGGGCAGAGATACCTATGGAGTCAGACCTTTATTTAAAGCCATGACAGAA GATGGATTTTTGGCTGTGTGTTCAGAAGCTAAAGGTCTCGTTAACTTGAAGCACTCCATG ACCCCTTTTTTAAAAGTGGAGCCTTTTCTCCCCGGACACTATGAAGTTTTGGATTTAAAG CCAAATGGCAAAGTCGCCTCAGTGGAAATAGTAAAATATCATCACTGTCGAGATGAGCCT CTGCACACCCTGTATGACAGCGTGGAAAAACTCTTCCCAGGTTTTGAGATAGAAGCTGTG AAGAGCAACCTCCGGATCCTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 123-241, - strand, RNAz p=0.861735 | |
| 279-396, + strand, RNAz p=0.97231 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 123-241, - strand, RNAz p=0.861735 | |
| 279-396, + strand, RNAz p=0.97231 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_133436, + |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 123-396, gnl|bosTau2|chr4 (4108656-4108929) | |
| 123-396, gnl|canFam2|chr14 (25678849-25679107) | |
| 123-396, gnl|canFam2|chr14 (25678849-25679106) | |
| 123-396, gnl|canFam2|chr14 (25678854-25679142) | |
| 123-396, gnl|danRer3|chr19 (29921587-29921847) | |
| 123-396, gnl|danRer3|chr19 (29921589-29921847) | |
| 123-396, gnl|danRer3|chr19 (29921595-29921864) | |
| 123-396, gnl|echTel1|scaffold_185531 (8880-9153) | |
| 123-396, gnl|echTel1|scaffold_322969 (1474-1735) | |
| 123-396, gnl|echTel1|scaffold_322969 (1476-1734) | |
| 123-396, gnl|galGal2|chr2 (23970893-23971149) | |
| 123-396, gnl|galGal2|chr2 (23970893-23971145) | |
| 123-396, gnl|galGal2|chr2 (23970898-23971176) | |
| 123-396, gnl|hg17|chr2 (94980122-94980379) | |
| 123-396, gnl|hg17|chr7 (97142872-97143160) | |
| 123-396, gnl|Hg17|chr7 (97143144-97142871) | |
| 123-396, gnl|hg17|chr8 (47645057-47645304) | |
| 123-396, gnl|loxAfr1|scaffold_64694 (3597-3323) | |
| 123-396, gnl|loxAfr1|scaffold_64694 (3595-3324) | |
| 123-396, gnl|loxAfr1|scaffold_64694 (3589-3290) | |
| 123-396, gnl|mm7|chr6 (7642131-7642392) | |
| 123-396, gnl|mm7|chr6 (7642133-7642391) | |
| 123-396, gnl|mm7|chr6 (7642139-7642427) | |
| 123-396, gnl|Mm7|chr6 (7642411-7642138) | |
| 123-396, gnl|oryCun1|scaffold_160894 (7219-7480) | |
| 123-396, gnl|oryCun1|scaffold_160894 (7221-7479) | |
| 123-396, gnl|oryCun1|scaffold_160894 (7227-7515) | |
| 123-396, gnl|panTro1|chr6 (98792860-98793148) | |
| 123-396, gnl|panTro1|chr7 (49245395-49245642) | |
| 123-396, gnl|panTro1|chrUn_random (63992154-63991897) | |
| 123-396, gnl|rheMac2|chr3 (119414088-119413827) | |
| 123-396, gnl|rheMac2|chr3 (119414086-119413828) | |
| 123-396, gnl|rheMac2|chr3 (119414080-119413792) | |
| 123-396, gnl|rn3|chr4 (32891136-32891394) | |
| 123-396, gnl|rn3|chr4 (32891136-32891393) | |
| 123-396, gnl|rn3|chr4 (32891141-32891428) | |
| 123-396, gnl|tetNig1|chrUn_random (10380837-10380578) | |
| 123-396, gnl|tetNig1|chrUn_random (10380837-10380582) | |
| 123-396, gnl|tetNig1|chrUn_random (10380831-10380582) | |
| 123-396, gnl|xenTro1|scaffold_420 (333468-333210) | |
| 123-396, gnl|xenTro1|scaffold_420 (333469-333211) | |
| 123-396, gnl|xenTro1|scaffold_420 (333463-333175) | |
| 633-822, gnl|bosTau2|chr4 (4118032-4118221) | |
| 633-822, gnl|canFam2|chr14 (25672965-25673151) | |
| 633-822, gnl|canFam2|chr14 (25672965-25673160) | |
| 633-822, gnl|danRer3|chr19 (29918581-29918751) | |
| 633-822, gnl|danRer3|chr19 (29918581-29918751) | |
| 633-822, gnl|dasNov1|scaffold_6885 (11266-11452) | |
| 633-822, gnl|dasNov1|scaffold_6885 (11266-11461) | |
| 633-822, gnl|echTel1|scaffold_185531 (8455-8640) | |
| 633-822, gnl|echTel1|scaffold_185531 (8455-8640) | |
| 633-822, gnl|fr1|chrUn (39772915-39772771) | |
| 633-822, gnl|galGal2|chr2 (23968400-23968586) | |
| 633-822, gnl|galGal2|chr2 (23968400-23968595) | |
| 633-822, gnl|hg17|chr7 (97133175-97133370) | |
| 633-822, gnl|Hg17|chr7 (97133363-97133174) | |
| 633-822, gnl|hg17|chr8 (47626828-47627014) | |
| 633-822, gnl|loxAfr1|scaffold_1886 (3751-3565) | |
| 633-822, gnl|loxAfr1|scaffold_1886 (3751-3556) | |
| 633-822, gnl|mm7|chr6 (7635156-7635342) | |
| 633-822, gnl|mm7|chr6 (7635156-7635351) | |
| 633-822, gnl|Mm7|chr6 (7635344-7635155) | |
| 633-822, gnl|oryCun1|scaffold_203523 (140415-140602) | |
| 633-822, gnl|oryCun1|scaffold_203523 (140417-140602) | |
| 633-822, gnl|panTro1|chr6 (98782571-98782766) | |
| 633-822, gnl|panTro1|chr7 (49226250-49226437) | |
| 633-822, gnl|rheMac2|chr3 (119423926-119423740) | |
| 633-822, gnl|rheMac2|chr3 (119423926-119423731) | |
| 633-822, gnl|rn3|chr4 (32884799-32884985) | |
| 633-822, gnl|rn3|chr4 (32884799-32884995) | |
| 633-822, gnl|tetNig1|chrUn_random (10381387-10381261) | |
| 633-822, gnl|xenTro1|scaffold_420 (335248-335062) | |
| 633-822, gnl|xenTro1|scaffold_420 (335248-335053) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-396, gnl|bosTau2|chr4 (4108656-4108929) | |
| 123-396, gnl|canFam2|chr14 (25678849-25679107) | |
| 123-396, gnl|canFam2|chr14 (25678849-25679106) | |
| 123-396, gnl|canFam2|chr14 (25678854-25679142) | |
| 123-396, gnl|danRer3|chr19 (29921587-29921847) | |
| 123-396, gnl|danRer3|chr19 (29921589-29921847) | |
| 123-396, gnl|danRer3|chr19 (29921595-29921864) | |
| 123-396, gnl|echTel1|scaffold_185531 (8880-9153) | |
| 123-396, gnl|echTel1|scaffold_322969 (1474-1735) | |
| 123-396, gnl|echTel1|scaffold_322969 (1476-1734) | |
| 123-396, gnl|galGal2|chr2 (23970893-23971149) | |
| 123-396, gnl|galGal2|chr2 (23970893-23971145) | |
| 123-396, gnl|galGal2|chr2 (23970898-23971176) | |
| 123-396, gnl|hg17|chr2 (94980122-94980379) | |
| 123-396, gnl|hg17|chr7 (97142872-97143160) | |
| 123-396, gnl|Hg17|chr7 (97143144-97142871) | |
| 123-396, gnl|hg17|chr8 (47645057-47645304) | |
| 123-396, gnl|loxAfr1|scaffold_64694 (3597-3323) | |
| 123-396, gnl|loxAfr1|scaffold_64694 (3595-3324) | |
| 123-396, gnl|loxAfr1|scaffold_64694 (3589-3290) | |
| 123-396, gnl|mm7|chr6 (7642131-7642392) | |
| 123-396, gnl|mm7|chr6 (7642133-7642391) | |
| 123-396, gnl|mm7|chr6 (7642139-7642427) | |
| 123-396, gnl|Mm7|chr6 (7642411-7642138) | |
| 123-396, gnl|oryCun1|scaffold_160894 (7219-7480) | |
| 123-396, gnl|oryCun1|scaffold_160894 (7221-7479) | |
| 123-396, gnl|oryCun1|scaffold_160894 (7227-7515) | |
| 123-396, gnl|panTro1|chr6 (98792860-98793148) | |
| 123-396, gnl|panTro1|chr7 (49245395-49245642) | |
| 123-396, gnl|panTro1|chrUn_random (63992154-63991897) | |
| 123-396, gnl|rheMac2|chr3 (119414088-119413827) | |
| 123-396, gnl|rheMac2|chr3 (119414086-119413828) | |
| 123-396, gnl|rheMac2|chr3 (119414080-119413792) | |
| 123-396, gnl|rn3|chr4 (32891136-32891394) | |
| 123-396, gnl|rn3|chr4 (32891136-32891393) | |
| 123-396, gnl|rn3|chr4 (32891141-32891428) | |
| 123-396, gnl|tetNig1|chrUn_random (10380837-10380578) | |
| 123-396, gnl|tetNig1|chrUn_random (10380837-10380582) | |
| 123-396, gnl|tetNig1|chrUn_random (10380831-10380582) | |
| 123-396, gnl|xenTro1|scaffold_420 (333468-333210) | |
| 123-396, gnl|xenTro1|scaffold_420 (333469-333211) | |
| 123-396, gnl|xenTro1|scaffold_420 (333463-333175) | |
| 633-822, gnl|bosTau2|chr4 (4118032-4118221) | |
| 633-822, gnl|canFam2|chr14 (25672965-25673151) | |
| 633-822, gnl|canFam2|chr14 (25672965-25673160) | |
| 633-822, gnl|danRer3|chr19 (29918581-29918751) | |
| 633-822, gnl|danRer3|chr19 (29918581-29918751) | |
| 633-822, gnl|dasNov1|scaffold_6885 (11266-11452) | |
| 633-822, gnl|dasNov1|scaffold_6885 (11266-11461) | |
| 633-822, gnl|echTel1|scaffold_185531 (8455-8640) | |
| 633-822, gnl|echTel1|scaffold_185531 (8455-8640) | |
| 633-822, gnl|fr1|chrUn (39772915-39772771) | |
| 633-822, gnl|galGal2|chr2 (23968400-23968586) | |
| 633-822, gnl|galGal2|chr2 (23968400-23968595) | |
| 633-822, gnl|hg17|chr7 (97133175-97133370) | |
| 633-822, gnl|Hg17|chr7 (97133363-97133174) | |
| 633-822, gnl|hg17|chr8 (47626828-47627014) | |
| 633-822, gnl|loxAfr1|scaffold_1886 (3751-3565) | |
| 633-822, gnl|loxAfr1|scaffold_1886 (3751-3556) | |
| 633-822, gnl|mm7|chr6 (7635156-7635342) | |
| 633-822, gnl|mm7|chr6 (7635156-7635351) | |
| 633-822, gnl|Mm7|chr6 (7635344-7635155) | |
| 633-822, gnl|oryCun1|scaffold_203523 (140415-140602) | |
| 633-822, gnl|oryCun1|scaffold_203523 (140417-140602) | |
| 633-822, gnl|panTro1|chr6 (98782571-98782766) | |
| 633-822, gnl|panTro1|chr7 (49226250-49226437) | |
| 633-822, gnl|rheMac2|chr3 (119423926-119423740) | |
| 633-822, gnl|rheMac2|chr3 (119423926-119423731) | |
| 633-822, gnl|rn3|chr4 (32884799-32884985) | |
| 633-822, gnl|rn3|chr4 (32884799-32884995) | |
| 633-822, gnl|tetNig1|chrUn_random (10381387-10381261) | |
| 633-822, gnl|xenTro1|scaffold_420 (335248-335062) | |
| 633-822, gnl|xenTro1|scaffold_420 (335248-335053) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.253004) | |
| nmm (0.132802) | |
| cty (0.10408) |