Ss1.1-Tra1-TCH01G040031.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTTGGGGAGGGACGCGGGCGGGGACAGAGCTCCGTACGCTCGCTGCTGGAGGGTGATG GCCCTGCGAGGCTGCAGGCTCCGACCTTACCCGGAGTCGGCGGCGAGAGGATCGCAGAGG CGCGAGGTTCTGGGCTAGCGCTAAGTGCGAACTCCAACCACCCCGGGTCTTTACACATTC TGCGTCTACAGACTCTGACCAAGGCGACTCAGAGGATCCGCTCTGGTTTGAGCTGCTCGT CGTCCTCCAGATCATGTCCGCAGCTCCCTGGACTCCGCGCGGAAAAAGAAGTTTGTCAGG CGTGGACCCAATGACCTTTCCAAGCTGTGTGCCTCACTCTCTGGACCAGGTCTGAGTGGT GCTCCCCAGGCGGACCTTTCTGCTAGAGGGTTTTCTCTGCGTGCTGTGCTGTTGTCCTTC TGGGTTTTCACCGGAGCCCCACGCCCGCCGCTTCTGAATCCTGGAAAAGAGAGGTGGCTA CCTCCGGCCCCCAACACCCCGGAAAATGGGGAGCAAGGCCCTGCCGGCGCCCATCCCGCT CCACCCATCGCTGCAGCTCACCAATTACTCCTTCCTGCAGGCCGTGAACACCTTCCCCGC TGCGGTGGACCACCTGCAGGGCCTGTACGGTCTCAGCGCCGTGCAGACCATGCACATGAA CCACTGGACCCTGGGGTACCCCAACATGCACGAGATCACCCGCTCCACCATCACCGAGAT GGCGGCGGCGCAGGGCCTCGTGGACGCGCGCTTCCCCTTCCCGGCTCTGCCCTTTACCAC CCACCTCTTCCACCCCAAGCAGGGAGCCATTGCCCACGTCCTCCCAGCTCTGCACAAAGA CCGGCCTCGGTTTGACTTCGCCAACTTGGCTGTGGCCGCTACGCAAGAGGACCCCCCTAA GATAGGAGACCTGACCAAGCTGAGCCCGGGGCTGGGTAGCCCCATCTCGGGCCTCAGTAA ATTGACTCCGGACAGAAAGCCCTCCCGAGGGAGGTTGCCCTCCAAAACGAAAAAAGAGTT TATCTGCAAGTTTTGCGGCAGACACTTTACCAAATCCTACAATTTGCTCATCCACGAGAG GACCCACACGGATGAGAGGCCATACACGTGTGACATATGCCATAAGGCTTTCCGGAGGCA AGATCATTTGCGGGATCACAGGTATATCCATTCCAAAGAAAAACCCTTCAAATGTCAGGA GTGTGGGAAAGGATTTTGTCAGTCTAGAACTCTAGCAGTTCACAAAACTTTACATATGCA GGAATCTCCACACAAATGTCCCACATGTGGAAGAACCTTTAATCAGAGAAGTAATCTGAA AACTCACCTTCTCACCCATACAGACATCAAGCCCTACAGCTGCGAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTTGGGGAGGGACGCGGGCGGGGACAGAGCTCCGTACGCTCGCTGCTGGAGGGTGATG GCCCTGCGAGGCTGCAGGCTCCGACCTTACCCGGAGTCGGCGGCGAGAGGATCGCAGAGG CGCGAGGTTCTGGGCTAGCGCTAAGTGCGAACTCCAACCACCCCGGGTCTTTACACATTC TGCGTCTACAGACTCTGACCAAGGCGACTCAGAGGATCCGCTCTGGTTTGAGCTGCTCGT CGTCCTCCAGATCATGTCCGCAGCTCCCTGGACTCCGCGCGGAAAAAGAAGTTTGTCAGG CGTGGACCCAATGACCTTTCCAAGCTGTGTGCCTCACTCTCTGGACCAGGTCTGAGTGGT GCTCCCCAGGCGGACCTTTCTGCTAGAGGGTTTTCTCTGCGTGCTGTGCTGTTGTCCTTC TGGGTTTTCACCGGAGCCCCACGCCCGCCGCTTCTGAATCCTGGAAAAGAGAGGTGGCTA CCTCCGGCCCCCAACACCCCGGAAAATGGGGAGCAAGGCCCTGCCGGCGCCCATCCCGCT CCACCCATCGCTGCAGCTCACCAATTACTCCTTCCTGCAGGCCGTGAACACCTTCCCCGC TGCGGTGGACCACCTGCAGGGCCTGTACGGTCTCAGCGCCGTGCAGACCATGCACATGAA CCACTGGACCCTGGGGTACCCCAACATGCACGAGATCACCCGCTCCACCATCACCGAGAT GGCGGCGGCGCAGGGCCTCGTGGACGCGCGCTTCCCCTTCCCGGCTCTGCCCTTTACCAC CCACCTCTTCCACCCCAAGCAGGGAGCCATTGCCCACGTCCTCCCAGCTCTGCACAAAGA CCGGCCTCGGTTTGACTTCGCCAACTTGGCTGTGGCCGCTACGCAAGAGGACCCCCCTAA GATAGGAGACCTGACCAAGCTGAGCCCGGGGCTGGGTAGCCCCATCTCGGGCCTCAGTAA ATTGACTCCGGACAGAAAGCCCTCCCGAGGGAGGTTGCCCTCCAAAACGAAAAAAGAGTT TATCTGCAAGTTTTGCGGCAGACACTTTACCAAATCCTACAATTTGCTCATCCACGAGAG GACCCACACGGATGAGAGGCCATACACGTGTGACATATGCCATAAGGCTTTCCGGAGGCA AGATCATTTGCGGGATCACAGGTATATCCATTCCAAAGAAAAACCCTTCAAATGTCAGGA GTGTGGGAAAGGATTTTGTCAGTCTAGAACTCTAGCAGTTCACAAAACTTTACATATGCA GGAATCTCCACACAAATGTCCCACATGTGGAAGAACCTTTAATCAGAGAAGTAATCTGAA AACTCACCTTCTCACCCATACAGACATCAAGCCCTACAGCTGCGAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 530-729, - strand, RNAz p=0.642037 | |
| 850-1089, + strand, RNAz p=0.904966 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 530-729, - strand, RNAz p=0.642037 | |
| 850-1089, + strand, RNAz p=0.904966 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-389, gnl|bosTau2|chr14 (40842320-40841940) | |
| 1-389, gnl|canFam2|chr13 (4023849-4024291) | |
| 1-389, gnl|dasNov1|scaffold_9244 (36937-37355) | |
| 1-389, gnl|echTel1|scaffold_300715 (19161-19613) | |
| 1-389, gnl|hg17|chr8 (100025833-100026277) | |
| 1-389, gnl|Hg17|chr8 (100025846-100026228) | |
| 1-389, gnl|loxAfr1|scaffold_7441 (85936-85493) | |
| 1-389, gnl|mm7|chr15 (35405411-35405839) | |
| 1-389, gnl|Mm7|chr15 (35405424-35405794) | |
| 1-389, gnl|monDom2|scaffold_3 (65285089-65284552) | |
| 1-389, gnl|oryCun1|scaffold_205100 (113114-113568) | |
| 1-389, gnl|panTro1|chr7 (102354818-102355262) | |
| 1-389, gnl|rheMac2|chr8 (101475886-101476329) | |
| 1-389, gnl|rn3|chr7 (70789820-70790248) | |
| 419-1164, gnl|bosTau2|chr14 (40837927-40837181) | |
| 419-1164, gnl|Hg17|chr8 (100030264-100031015) | |
| 419-1164, gnl|Mm7|chr15 (35409536-35410284) | |
| 1248-1368, gnl|bosTau2|chr14 (40835265-40835143) | |
| 1248-1368, gnl|canFam2|chr13 (4030806-4030927) | |
| 1248-1368, gnl|danRer3|chrNA (93951034-93951151) | |
| 1248-1368, gnl|dasNov1|scaffold_9244 (44112-44233) | |
| 1248-1368, gnl|echTel1|scaffold_260014 (11038-10917) | |
| 1248-1368, gnl|fr1|chrUn (12203674-12203553) | |
| 1248-1368, gnl|galGal2|chr2 (126917970-126918091) | |
| 1248-1368, gnl|hg17|chr8 (100032884-100033005) | |
| 1248-1368, gnl|Hg17|chr8 (100032907-100033029) | |
| 1248-1368, gnl|mm7|chr15 (35412023-35412145) | |
| 1248-1368, gnl|Mm7|chr15 (35412047-35412169) | |
| 1248-1368, gnl|monDom2|scaffold_3 (65276574-65276453) | |
| 1248-1368, gnl|oryCun1|scaffold_205100 (120158-120279) | |
| 1248-1368, gnl|panTro1|chr7 (102361859-102361980) | |
| 1248-1368, gnl|rheMac2|chr8 (101482895-101483016) | |
| 1248-1368, gnl|rn3|chr7 (70796366-70796488) | |
| 1248-1368, gnl|tetNig1|chr8 (9771148-9771265) | |
| 1248-1368, gnl|xenTro1|scaffold_59 (173308-173429) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-389, gnl|bosTau2|chr14 (40842320-40841940) | |
| 1-389, gnl|canFam2|chr13 (4023849-4024291) | |
| 1-389, gnl|dasNov1|scaffold_9244 (36937-37355) | |
| 1-389, gnl|echTel1|scaffold_300715 (19161-19613) | |
| 1-389, gnl|hg17|chr8 (100025833-100026277) | |
| 1-389, gnl|Hg17|chr8 (100025846-100026228) | |
| 1-389, gnl|loxAfr1|scaffold_7441 (85936-85493) | |
| 1-389, gnl|mm7|chr15 (35405411-35405839) | |
| 1-389, gnl|Mm7|chr15 (35405424-35405794) | |
| 1-389, gnl|monDom2|scaffold_3 (65285089-65284552) | |
| 1-389, gnl|oryCun1|scaffold_205100 (113114-113568) | |
| 1-389, gnl|panTro1|chr7 (102354818-102355262) | |
| 1-389, gnl|rheMac2|chr8 (101475886-101476329) | |
| 1-389, gnl|rn3|chr7 (70789820-70790248) | |
| 419-1164, gnl|bosTau2|chr14 (40837927-40837181) | |
| 419-1164, gnl|Hg17|chr8 (100030264-100031015) | |
| 419-1164, gnl|Mm7|chr15 (35409536-35410284) | |
| 1248-1368, gnl|bosTau2|chr14 (40835265-40835143) | |
| 1248-1368, gnl|canFam2|chr13 (4030806-4030927) | |
| 1248-1368, gnl|danRer3|chrNA (93951034-93951151) | |
| 1248-1368, gnl|dasNov1|scaffold_9244 (44112-44233) | |
| 1248-1368, gnl|echTel1|scaffold_260014 (11038-10917) | |
| 1248-1368, gnl|fr1|chrUn (12203674-12203553) | |
| 1248-1368, gnl|galGal2|chr2 (126917970-126918091) | |
| 1248-1368, gnl|hg17|chr8 (100032884-100033005) | |
| 1248-1368, gnl|Hg17|chr8 (100032907-100033029) | |
| 1248-1368, gnl|mm7|chr15 (35412023-35412145) | |
| 1248-1368, gnl|Mm7|chr15 (35412047-35412169) | |
| 1248-1368, gnl|monDom2|scaffold_3 (65276574-65276453) | |
| 1248-1368, gnl|oryCun1|scaffold_205100 (120158-120279) | |
| 1248-1368, gnl|panTro1|chr7 (102361859-102361980) | |
| 1248-1368, gnl|rheMac2|chr8 (101482895-101483016) | |
| 1248-1368, gnl|rn3|chr7 (70796366-70796488) | |
| 1248-1368, gnl|tetNig1|chr8 (9771148-9771265) | |
| 1248-1368, gnl|xenTro1|scaffold_59 (173308-173429) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| jej (0.197844) | |
| nco (0.161734) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.197844) | |
| nco (0.161734) | |
| eru (0.120048) | |
| jca (0.11396) |