Ss1.1-Tra1-TCH01G040090.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTACGGGGAAGGAGCCCGAGAAGGAGTCGGCGGCACAAAATGGCGGCGGCGACGGGGA CGGCCGGGACCGGGGCCGGGGCTCCGGGCTCGGCGGCCCCCGCGGCAGCGGCCGGCACGC CGGGCTCGGGCAGCGCAGCCCCGGGATCGCAGGGGGTGCTGATCGGGGACCGGCTGTACT CTGGGGTGCTCATCACCCTGGAGAACTGCCTCCTGCCTGACGACAAGCTGCGCTTCACTC CGTCCATGTCGAGTGGCCTCGACACCGACACCGAGACCGACCTCCGCGTGGTGGGCTGCG AGCTCATCCAGGCGGCCGGCATCCTGCTCCGCCTGCCGCAGGTGGCCATGGCTACAGGGC AGGTGTTGTTCCAGCGGTTCTTTTATACCAAGTCCTTTGTGAAGCATTCCATGGAGCATG TGTCAATGGCCTGTGTTCACCTGGCCTCCAAGATAGAGGAAGCTCCCAGAAGGATCCGAG ACGTCATCAATGTGTTTCACCGGCTTCGACACCTGAGGGAGAAAAGAAAACCTGTGCCTC TCCTGCTGGATCAAGATTACGTTAATTTAAAGAATCAAATCATAAAGGCGGAAAGGCGAG TCCTCAAGGAGCTGGGCTTCTGCGTGCACGTGAAGCACCCTCACAAGATAATCGTTATGT ACCTTCAGGTGTTAGAGTGTGAGCGTAACCAACCCCTGGTCCAGACCGCATGGGTAGCCT CTGAGGGTAAGTGACTAAGACTTCTCCTCTCCTGCCCAAGCGCTTTGGTGCAGGGACAGC GGCCGTCCTCAGCCAATCCAGTGCAGGCTCCGCGCCGAAGGCTGGCTCTAGAGGTGGTAT GCGCACGATAGTCTAGTGCTGGCCGACGCTGCTGTGGTTCTGACGATTGTGCTTCTTGTT AACCCTCTGTCCTGCTTGGTAACTGTATCGATTAGACTTGGTAACTGTTGACTTGAATTT TGTCCTTTAAAATGCTGTACCTGTGCAATAAAGATGCAGTACCTTTCTCGGTGGGAAGCG GTCAAAAGTGGCTGGTGGGAACTCAGACTGGAGCGTGGGAGGTGGTTGGCTCTGGAAGCC CCACAGTTGCTCCGATCGGCCGCTGAGGGGCGCCCCCCTCGAGGTCCACGAAAGGTGTGC ATCTTTAGATCACCCGTGGGCCCTTTGGATATTTATACTGTAATGTGTTTCAGACGTAGC AGTCAGTTTAAATGTATGTTTTGAGGACTCTGTTTTTTGGGGGACCTAAAAGTTAATGCA TTAAAAATATCACTCTCTGAAAAAAAAAAAAAAAAATACTAGAGCCCCCAACGTTACTGG GGGTTACGTTCATAAACGGTCTGAACTGTTCACTTGCAACTCTTGGGATGTACGGCCTTG GTCACTCAGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTACGGGGAAGGAGCCCGAGAAGGAGTCGGCGGCACAAAATGGCGGCGGCGACGGGGA CGGCCGGGACCGGGGCCGGGGCTCCGGGCTCGGCGGCCCCCGCGGCAGCGGCCGGCACGC CGGGCTCGGGCAGCGCAGCCCCGGGATCGCAGGGGGTGCTGATCGGGGACCGGCTGTACT CTGGGGTGCTCATCACCCTGGAGAACTGCCTCCTGCCTGACGACAAGCTGCGCTTCACTC CGTCCATGTCGAGTGGCCTCGACACCGACACCGAGACCGACCTCCGCGTGGTGGGCTGCG AGCTCATCCAGGCGGCCGGCATCCTGCTCCGCCTGCCGCAGGTGGCCATGGCTACAGGGC AGGTGTTGTTCCAGCGGTTCTTTTATACCAAGTCCTTTGTGAAGCATTCCATGGAGCATG TGTCAATGGCCTGTGTTCACCTGGCCTCCAAGATAGAGGAAGCTCCCAGAAGGATCCGAG ACGTCATCAATGTGTTTCACCGGCTTCGACACCTGAGGGAGAAAAGAAAACCTGTGCCTC TCCTGCTGGATCAAGATTACGTTAATTTAAAGAATCAAATCATAAAGGCGGAAAGGCGAG TCCTCAAGGAGCTGGGCTTCTGCGTGCACGTGAAGCACCCTCACAAGATAATCGTTATGT ACCTTCAGGTGTTAGAGTGTGAGCGTAACCAACCCCTGGTCCAGACCGCATGGGTAGCCT CTGAGGGTAAGTGACTAAGACTTCTCCTCTCCTGCCCAAGCGCTTTGGTGCAGGGACAGC GGCCGTCCTCAGCCAATCCAGTGCAGGCTCCGCGCCGAAGGCTGGCTCTAGAGGTGGTAT GCGCACGATAGTCTAGTGCTGGCCGACGCTGCTGTGGTTCTGACGATTGTGCTTCTTGTT AACCCTCTGTCCTGCTTGGTAACTGTATCGATTAGACTTGGTAACTGTTGACTTGAATTT TGTCCTTTAAAATGCTGTACCTGTGCAATAAAGATGCAGTACCTTTCTCGGTGGGAAGCG GTCAAAAGTGGCTGGTGGGAACTCAGACTGGAGCGTGGGAGGTGGTTGGCTCTGGAAGCC CCACAGTTGCTCCGATCGGCCGCTGAGGGGCGCCCCCCTCGAGGTCCACGAAAGGTGTGC ATCTTTAGATCACCCGTGGGCCCTTTGGATATTTATACTGTAATGTGTTTCAGACGTAGC AGTCAGTTTAAATGTATGTTTTGAGGACTCTGTTTTTTGGGGGACCTAAAAGTTAATGCA TTAAAAATATCACTCTCTGAAAAAAAAAAAAAAAAATACTAGAGCCCCCAACGTTACTGG GGGTTACGTTCATAAACGGTCTGAACTGTTCACTTGCAACTCTTGGGATGTACGGCCTTG GTCACTCAGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 712-866, + strand, RNAz p=0.619349 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 712-866, + strand, RNAz p=0.619349 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC016333, + |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-344, gnl|bosTau2|chr16 (37856463-37856789) | |
| 1-344, gnl|Hg17|chr1 (1419992-1419663) | |
| 1-344, gnl|Mm7|chr4 (154802031-154802354) | |
| 525-647, gnl|bosTau2|chr16 (37858472-37858594) | |
| 525-647, gnl|canFam2|chr5 (59549748-59549909) | |
| 525-647, gnl|canFam2|chr5 (59549909-59549774) | |
| 525-647, gnl|danRer3|chr2 (35732643-35732494) | |
| 525-647, gnl|danRer3|chr2 (35732494-35732630) | |
| 525-647, gnl|dasNov1|scaffold_36307 (1266-1108) | |
| 525-647, gnl|dasNov1|scaffold_36307 (1108-1243) | |
| 525-647, gnl|echTel1|scaffold_308082 (8703-8819) | |
| 525-647, gnl|echTel1|scaffold_308082 (8819-8703) | |
| 525-647, gnl|fr1|chrUn (265844554-265844405) | |
| 525-647, gnl|fr1|chrUn (265844405-265844536) | |
| 525-647, gnl|galGal2|chr21 (2113350-2113216) | |
| 525-647, gnl|galGal2|chr21 (2113216-2113350) | |
| 525-647, gnl|hg17|chr1 (1416010-1416170) | |
| 525-647, gnl|Hg17|chr1 (1416163-1416041) | |
| 525-647, gnl|hg17|chr1_random (363162-363298) | |
| 525-647, gnl|loxAfr1|scaffold_16891 (29018-29173) | |
| 525-647, gnl|loxAfr1|scaffold_16891 (29173-29038) | |
| 525-647, gnl|mm7|chr4 (154804934-154804778) | |
| 525-647, gnl|mm7|chr4 (154804778-154804912) | |
| 525-647, gnl|Mm7|chr4 (154804783-154804905) | |
| 525-647, gnl|monDom2|scaffold_196 (251425-251558) | |
| 525-647, gnl|monDom2|scaffold_196 (251558-251425) | |
| 525-647, gnl|oryCun1|scaffold_111637 (3321-3193) | |
| 525-647, gnl|oryCun1|scaffold_111637 (3193-3321) | |
| 525-647, gnl|panTro1|chr1 (1312065-1312225) | |
| 525-647, gnl|panTro1|chr1 (1312225-1312089) | |
| 525-647, gnl|rheMac2|chr1 (4471760-4471920) | |
| 525-647, gnl|rheMac2|chr1 (4471920-4471784) | |
| 525-647, gnl|rn3|chr5 (172680053-172679897) | |
| 525-647, gnl|rn3|chr5 (172679897-172680031) | |
| 525-647, gnl|tetNig1|chrUn_random (132161671-132161522) | |
| 525-647, gnl|tetNig1|chrUn_random (132161522-132161653) | |
| 525-647, gnl|xenTro1|scaffold_414 (283567-283436) | |
| 525-647, gnl|xenTro1|scaffold_414 (283436-283567) | |
| 712-1009, gnl|bosTau2|chr16 (37860178-37860481) | |
| 712-1009, gnl|Hg17|chr1 (1413451-1413148) | |
| 712-1009, gnl|Mm7|chr4 (154808080-154808393) | |
| 1013-1381, gnl|bosTau2|chr16 (37860502-37860853) | |
| 1013-1381, gnl|canFam2|chr5 (59547916-59547581) | |
| 1013-1381, gnl|danRer3|chr18 (44642512-44642833) | |
| 1013-1381, gnl|dasNov1|scaffold_36307 (3051-3404) | |
| 1013-1381, gnl|Hg17|chr1 (1413130-1412771) | |
| 1013-1381, gnl|hg17|chr1_random (366118-366448) | |
| 1013-1381, gnl|loxAfr1|scaffold_16891 (27209-26862) | |
| 1013-1381, gnl|mm7|chr4 (154808323-154808653) | |
| 1013-1381, gnl|Mm7|chr4 (154808420-154808758) | |
| 1013-1381, gnl|monDom2|scaffold_196 (249434-249056) | |
| 1013-1381, gnl|oryCun1|scaffold_57969 (2165-1948) | |
| 1013-1381, gnl|panTro1|chr1 (1309275-1308943) | |
| 1013-1381, gnl|rheMac2|chr1 (4469041-4468706) | |
| 1013-1381, gnl|rn3|chr5 (172683287-172683610) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-344, gnl|bosTau2|chr16 (37856463-37856789) | |
| 1-344, gnl|Hg17|chr1 (1419992-1419663) | |
| 1-344, gnl|Mm7|chr4 (154802031-154802354) | |
| 525-647, gnl|bosTau2|chr16 (37858472-37858594) | |
| 525-647, gnl|canFam2|chr5 (59549748-59549909) | |
| 525-647, gnl|canFam2|chr5 (59549909-59549774) | |
| 525-647, gnl|danRer3|chr2 (35732643-35732494) | |
| 525-647, gnl|danRer3|chr2 (35732494-35732630) | |
| 525-647, gnl|dasNov1|scaffold_36307 (1266-1108) | |
| 525-647, gnl|dasNov1|scaffold_36307 (1108-1243) | |
| 525-647, gnl|echTel1|scaffold_308082 (8703-8819) | |
| 525-647, gnl|echTel1|scaffold_308082 (8819-8703) | |
| 525-647, gnl|fr1|chrUn (265844554-265844405) | |
| 525-647, gnl|fr1|chrUn (265844405-265844536) | |
| 525-647, gnl|galGal2|chr21 (2113350-2113216) | |
| 525-647, gnl|galGal2|chr21 (2113216-2113350) | |
| 525-647, gnl|hg17|chr1 (1416010-1416170) | |
| 525-647, gnl|Hg17|chr1 (1416163-1416041) | |
| 525-647, gnl|hg17|chr1_random (363162-363298) | |
| 525-647, gnl|loxAfr1|scaffold_16891 (29018-29173) | |
| 525-647, gnl|loxAfr1|scaffold_16891 (29173-29038) | |
| 525-647, gnl|mm7|chr4 (154804934-154804778) | |
| 525-647, gnl|mm7|chr4 (154804778-154804912) | |
| 525-647, gnl|Mm7|chr4 (154804783-154804905) | |
| 525-647, gnl|monDom2|scaffold_196 (251425-251558) | |
| 525-647, gnl|monDom2|scaffold_196 (251558-251425) | |
| 525-647, gnl|oryCun1|scaffold_111637 (3321-3193) | |
| 525-647, gnl|oryCun1|scaffold_111637 (3193-3321) | |
| 525-647, gnl|panTro1|chr1 (1312065-1312225) | |
| 525-647, gnl|panTro1|chr1 (1312225-1312089) | |
| 525-647, gnl|rheMac2|chr1 (4471760-4471920) | |
| 525-647, gnl|rheMac2|chr1 (4471920-4471784) | |
| 525-647, gnl|rn3|chr5 (172680053-172679897) | |
| 525-647, gnl|rn3|chr5 (172679897-172680031) | |
| 525-647, gnl|tetNig1|chrUn_random (132161671-132161522) | |
| 525-647, gnl|tetNig1|chrUn_random (132161522-132161653) | |
| 525-647, gnl|xenTro1|scaffold_414 (283567-283436) | |
| 525-647, gnl|xenTro1|scaffold_414 (283436-283567) | |
| 712-1009, gnl|bosTau2|chr16 (37860178-37860481) | |
| 712-1009, gnl|Hg17|chr1 (1413451-1413148) | |
| 712-1009, gnl|Mm7|chr4 (154808080-154808393) | |
| 1013-1381, gnl|bosTau2|chr16 (37860502-37860853) | |
| 1013-1381, gnl|canFam2|chr5 (59547916-59547581) | |
| 1013-1381, gnl|danRer3|chr18 (44642512-44642833) | |
| 1013-1381, gnl|dasNov1|scaffold_36307 (3051-3404) | |
| 1013-1381, gnl|Hg17|chr1 (1413130-1412771) | |
| 1013-1381, gnl|hg17|chr1_random (366118-366448) | |
| 1013-1381, gnl|loxAfr1|scaffold_16891 (27209-26862) | |
| 1013-1381, gnl|mm7|chr4 (154808323-154808653) | |
| 1013-1381, gnl|Mm7|chr4 (154808420-154808758) | |
| 1013-1381, gnl|monDom2|scaffold_196 (249434-249056) | |
| 1013-1381, gnl|oryCun1|scaffold_57969 (2165-1948) | |
| 1013-1381, gnl|panTro1|chr1 (1309275-1308943) | |
| 1013-1381, gnl|rheMac2|chr1 (4469041-4468706) | |
| 1013-1381, gnl|rn3|chr5 (172683287-172683610) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cag (0.302389) | |
| pgl (0.236967) | |
| spc (0.226732) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| eli (0.151814) | |
| nca (0.136874) | |
| ese (0.126502) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| pgl (0.236967) | |
| spc (0.226732) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| eli (0.151814) | |
| nca (0.136874) | |
| ese (0.126502) | |
| med (0.116252) | |
| ecc (0.115035) |