Ss1.1-Tra1-TCH01G050007.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCTCCCCGCAACACCTACAAGGCTAGAACCAGCCATCCGTTAGCTGTCGCTGCTGGGC TTCTTCATCTTCCCGCGTCACTGCTGCCGCCATGCCCGGAGGTCTGCTTCTCGGGGACGA GGCTCCCAACTTCGAAGCCAATACTACCATCGGCCGCATCCGTTTCCACGACTTTCTGGG AGACTCATGGGGCATTCTTTTCTCCCACCCTCGGGACTTCACCCCAGTGTGCACCACAGA GCTTGGCAGAGCGGCCAAGCTGGCACCAGAATTTGCCAAGAGGAATGTTAAGATGATTGC CCTTTCAATAGACAGTGTCGAAGACCATCTTGCCTGGAGCAAGGATATCAATGCTTACAA TGGTGAGGAGCCCAAGGAAACGTTACCTTTTCCCATCATTGATGATAAGAGTCGGGACCT TGCCATCCAGTTGGGTATGCTAGACCCAGCAGAAAAGGACGAACAGGGCATGCCTGTGAC AGCTCGTGTGGTATTTATTTTTGGTCCCGATAAAAAGCTGAAACTGTCCATCCTCTACCC AGCTACCACTGGCAGAAACTTTGATGAGATTCTCAGAGTAATTATCTCTCTCCAGCTGAC AGCAGAAAAGAGGGTTGCCACTCCGGTTGACTGGAAGAATGGAGACAGCGTGATGGTCCT TCCAAATATCCCTGAAGAGGAAGCCAAAAAACTTTTCCCTAAAGGAGTCTTCACCAAAGA GCTCCCATCTGGCAAGAAATACCTCCGTTACACACCCCAGCCATAGGCTCTCCAAGGAGT TGGTGCTGGAGCTGCTCACTTAGCACCATGAGCCAGAGGATGCCAGCAGCCCCTCTCATT TTCCTGCAGCAGTTCCATAAAAACATCCTGGTGTGATCTCAGCCAAGGTCTTTAGGTTGC TATACTACTAGCTTATTAAATGAAAATGGCACTAAAAATTCCTTGGGATTCTTTGCTCTG TGCCTTCAGCAGCATTCTCTTCTCTTCACCTATCAGCTCTCTGCCAACTCTCTGAAATGT GAGGCTCATCTTGTTGGATCTCTGCAGGGTCAATAAGATGGTATCAGTTTATGGTTGAAA GAAATCGGCTTTGCTCCATCAGAGATTGACTATCAGGCTTTTTTGTTTTGTTTTGTTTTG TTTTTTAGCTATTCTAATCAAATCCTCTCTTCTGTTACCCATTTTGGAAAGCAATAGAAC GTGGGGTTCAACTTCCCTGTACACATCTAAGTACAGAACCTAAGGATGTAGAGTACTCCA GATGTTCTTCAGTATTCCATGTTTTGATCACAGCTGGGAAAAACTTTTTCAATTCTGTAC TTTTCCAGTTGATGACTGAAGCTGGGGGAGGGATCTTTAAATACTTTGCTATCAAGAAAT TTTTTCATTGAATTTCTGTTGAAAGGGGGCAACTACAGAAAAGGTTCCCCTTCCCTGCCA GGGAGGTGTACCAGAAGGCATGAGCAGTACAACCAGTGCCAGGTGCCTTTCAAAGTATCT CTGGATGTCGGTCTGCTCTATGATGAAGTGCCCATGAAAGTGCACACCTTGGCAAGAGAG GACAATTGGAAATGTTCTACTATAGAATTAGTCATAAGTGGGGGAGGGGGGCTATTTTCT GAATTTTGCTTTTTAGGAATCAGCAAATAAACCCTTTGTTAAAATGCAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCTCCCCGCAACACCTACAAGGCTAGAACCAGCCATCCGTTAGCTGTCGCTGCTGGGC TTCTTCATCTTCCCGCGTCACTGCTGCCGCCATGCCCGGAGGTCTGCTTCTCGGGGACGA GGCTCCCAACTTCGAAGCCAATACTACCATCGGCCGCATCCGTTTCCACGACTTTCTGGG AGACTCATGGGGCATTCTTTTCTCCCACCCTCGGGACTTCACCCCAGTGTGCACCACAGA GCTTGGCAGAGCGGCCAAGCTGGCACCAGAATTTGCCAAGAGGAATGTTAAGATGATTGC CCTTTCAATAGACAGTGTCGAAGACCATCTTGCCTGGAGCAAGGATATCAATGCTTACAA TGGTGAGGAGCCCAAGGAAACGTTACCTTTTCCCATCATTGATGATAAGAGTCGGGACCT TGCCATCCAGTTGGGTATGCTAGACCCAGCAGAAAAGGACGAACAGGGCATGCCTGTGAC AGCTCGTGTGGTATTTATTTTTGGTCCCGATAAAAAGCTGAAACTGTCCATCCTCTACCC AGCTACCACTGGCAGAAACTTTGATGAGATTCTCAGAGTAATTATCTCTCTCCAGCTGAC AGCAGAAAAGAGGGTTGCCACTCCGGTTGACTGGAAGAATGGAGACAGCGTGATGGTCCT TCCAAATATCCCTGAAGAGGAAGCCAAAAAACTTTTCCCTAAAGGAGTCTTCACCAAAGA GCTCCCATCTGGCAAGAAATACCTCCGTTACACACCCCAGCCATAGGCTCTCCAAGGAGT TGGTGCTGGAGCTGCTCACTTAGCACCATGAGCCAGAGGATGCCAGCAGCCCCTCTCATT TTCCTGCAGCAGTTCCATAAAAACATCCTGGTGTGATCTCAGCCAAGGTCTTTAGGTTGC TATACTACTAGCTTATTAAATGAAAATGGCACTAAAAATTCCTTGGGATTCTTTGCTCTG TGCCTTCAGCAGCATTCTCTTCTCTTCACCTATCAGCTCTCTGCCAACTCTCTGAAATGT GAGGCTCATCTTGTTGGATCTCTGCAGGGTCAATAAGATGGTATCAGTTTATGGTTGAAA GAAATCGGCTTTGCTCCATCAGAGATTGACTATCAGGCTTTTTTGTTTTGTTTTGTTTTG TTTTTTAGCTATTCTAATCAAATCCTCTCTTCTGTTACCCATTTTGGAAAGCAATAGAAC GTGGGGTTCAACTTCCCTGTACACATCTAAGTACAGAACCTAAGGATGTAGAGTACTCCA GATGTTCTTCAGTATTCCATGTTTTGATCACAGCTGGGAAAAACTTTTTCAATTCTGTAC TTTTCCAGTTGATGACTGAAGCTGGGGGAGGGATCTTTAAATACTTTGCTATCAAGAAAT TTTTTCATTGAATTTCTGTTGAAAGGGGGCAACTACAGAAAAGGTTCCCCTTCCCTGCCA GGGAGGTGTACCAGAAGGCATGAGCAGTACAACCAGTGCCAGGTGCCTTTCAAAGTATCT CTGGATGTCGGTCTGCTCTATGATGAAGTGCCCATGAAAGTGCACACCTTGGCAAGAGAG GACAATTGGAAATGTTCTACTATAGAATTAGTCATAAGTGGGGGAGGGGGGCTATTTTCT GAATTTTGCTTTTTAGGAATCAGCAAATAAACCCTTTGTTAAAATGCAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-186, gnl|bosTau2|chr16 (41630691-41630876) | |
| 1-186, gnl|Hg17|chr1 (170178107-170178288) | |
| 1-186, gnl|Mm7|chr1 (161213547-161213384) | |
| 187-344, gnl|bosTau2|chr16 (41635012-41635170) | |
| 187-344, gnl|canFam2|chr7 (28637670-28637490) | |
| 187-344, gnl|canFam2|chr7 (28637645-28637528) | |
| 187-344, gnl|danRer3|chr20 (15125417-15125603) | |
| 187-344, gnl|danRer3|chr20 (15125448-15125565) | |
| 187-344, gnl|dasNov1|scaffold_57611 (2790-2639) | |
| 187-344, gnl|dasNov1|scaffold_57611 (2789-2681) | |
| 187-344, gnl|echTel1|scaffold_102028 (1427-1557) | |
| 187-344, gnl|echTel1|scaffold_277554 (52429-52249) | |
| 187-344, gnl|fr1|chrUn (203335457-203335278) | |
| 187-344, gnl|fr1|chrUn (243428061-243428178) | |
| 187-344, gnl|hg17|chr1 (170182101-170182281) | |
| 187-344, gnl|Hg17|chr1 (170182122-170182279) | |
| 187-344, gnl|hg17|chr4 (189266675-189266802) | |
| 187-344, gnl|mm7|chr1 (161209795-161209618) | |
| 187-344, gnl|Mm7|chr1 (161209775-161209618) | |
| 187-344, gnl|mm7|chr4 (25377728-25377845) | |
| 187-344, gnl|monDom2|scaffold_16 (24771684-24771862) | |
| 187-344, gnl|monDom2|scaffold_23 (28152891-28152764) | |
| 187-344, gnl|oryCun1|scaffold_168419 (8230-8404) | |
| 187-344, gnl|oryCun1|scaffold_168419 (8249-8358) | |
| 187-344, gnl|panTro1|chr1 (152545254-152545434) | |
| 187-344, gnl|panTro1|chr3 (207514066-207514193) | |
| 187-344, gnl|rheMac2|chr1 (203126697-203126877) | |
| 187-344, gnl|rheMac2|chr5 (180092138-180092264) | |
| 187-344, gnl|rn3|chr10 (55675145-55675030) | |
| 187-344, gnl|rn3|chr13 (76845930-76845753) | |
| 187-344, gnl|tetNig1|chr15 (2858247-2858426) | |
| 187-344, gnl|tetNig1|chr15 (2858271-2858388) | |
| 187-344, gnl|xenTro1|scaffold_74 (339730-339550) | |
| 187-344, gnl|xenTro1|scaffold_74 (339705-339589) | |
| 636-1101, gnl|bosTau2|chr16 (41639573-41640040) | |
| 636-1101, gnl|Hg17|chr1 (170188529-170188994) | |
| 636-1101, gnl|Mm7|chr1 (161204213-161203748) | |
| 1137-1664, gnl|bosTau2|chr16 (41640129-41640663) | |
| 1137-1664, gnl|Hg17|chr1 (170189011-170189598) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-186, gnl|bosTau2|chr16 (41630691-41630876) | |
| 1-186, gnl|Hg17|chr1 (170178107-170178288) | |
| 1-186, gnl|Mm7|chr1 (161213547-161213384) | |
| 187-344, gnl|bosTau2|chr16 (41635012-41635170) | |
| 187-344, gnl|canFam2|chr7 (28637670-28637490) | |
| 187-344, gnl|canFam2|chr7 (28637645-28637528) | |
| 187-344, gnl|danRer3|chr20 (15125417-15125603) | |
| 187-344, gnl|danRer3|chr20 (15125448-15125565) | |
| 187-344, gnl|dasNov1|scaffold_57611 (2790-2639) | |
| 187-344, gnl|dasNov1|scaffold_57611 (2789-2681) | |
| 187-344, gnl|echTel1|scaffold_102028 (1427-1557) | |
| 187-344, gnl|echTel1|scaffold_277554 (52429-52249) | |
| 187-344, gnl|fr1|chrUn (203335457-203335278) | |
| 187-344, gnl|fr1|chrUn (243428061-243428178) | |
| 187-344, gnl|hg17|chr1 (170182101-170182281) | |
| 187-344, gnl|Hg17|chr1 (170182122-170182279) | |
| 187-344, gnl|hg17|chr4 (189266675-189266802) | |
| 187-344, gnl|mm7|chr1 (161209795-161209618) | |
| 187-344, gnl|Mm7|chr1 (161209775-161209618) | |
| 187-344, gnl|mm7|chr4 (25377728-25377845) | |
| 187-344, gnl|monDom2|scaffold_16 (24771684-24771862) | |
| 187-344, gnl|monDom2|scaffold_23 (28152891-28152764) | |
| 187-344, gnl|oryCun1|scaffold_168419 (8230-8404) | |
| 187-344, gnl|oryCun1|scaffold_168419 (8249-8358) | |
| 187-344, gnl|panTro1|chr1 (152545254-152545434) | |
| 187-344, gnl|panTro1|chr3 (207514066-207514193) | |
| 187-344, gnl|rheMac2|chr1 (203126697-203126877) | |
| 187-344, gnl|rheMac2|chr5 (180092138-180092264) | |
| 187-344, gnl|rn3|chr10 (55675145-55675030) | |
| 187-344, gnl|rn3|chr13 (76845930-76845753) | |
| 187-344, gnl|tetNig1|chr15 (2858247-2858426) | |
| 187-344, gnl|tetNig1|chr15 (2858271-2858388) | |
| 187-344, gnl|xenTro1|scaffold_74 (339730-339550) | |
| 187-344, gnl|xenTro1|scaffold_74 (339705-339589) | |
| 636-1101, gnl|bosTau2|chr16 (41639573-41640040) | |
| 636-1101, gnl|Hg17|chr1 (170188529-170188994) | |
| 636-1101, gnl|Mm7|chr1 (161204213-161203748) | |
| 1137-1664, gnl|bosTau2|chr16 (41640129-41640663) | |
| 1137-1664, gnl|Hg17|chr1 (170189011-170189598) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| col (1.95008) | |
| nlu (1.34177) | |
| cov (1.05722) | |
| nco (0.646935) | |
| lun (0.601956) | |
| nmm (0.531209) | |
| nms (0.427716) | |
| ssp (0.406559) | |
| eep (0.367692) | |
| cly (0.361925) | |
| fty (0.351679) | |
| ton (0.351) | |
| csp (0.322373) | |
| cli (0.305623) | |
| nbm (0.297974) | |
| nca (0.273748) | |
| ebs (0.236602) | |
| cbl (0.229595) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ese (0.126502) | |
| tra (0.123092) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (1.95008) | |
| nlu (1.34177) | |
| cov (1.05722) | |
| nco (0.646935) | |
| lun (0.601956) | |
| nmm (0.531209) | |
| nms (0.427716) | |
| ssp (0.406559) | |
| eep (0.367692) | |
| cly (0.361925) | |
| fty (0.351679) | |
| ton (0.351) | |
| csp (0.322373) | |
| cli (0.305623) | |
| nbm (0.297974) | |
| nca (0.273748) | |
| ebs (0.236602) | |
| cbl (0.229595) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ese (0.126502) | |
| tra (0.123092) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |