Non-Coding RNA Search

Ss1.1-Tra1-TCH01G050022.5

Sequence:


               
               CTATGCAGAAACTTTTCAGTTTTAATTTAATCCCACCAATATTCTTTTAATTAATTCATA
TTCTGCTTAAATAGGCTAGATTTGGCCTGTATCTCAGAATCTTGAGCTTGTTGGGAACTG
GATGAAAGTTTGCCATTCTCTTTGGAAATTGTTTGTTGAGATTGAGATTGCTGACTCGCC
TCTGGGGGATGGTAGGGACGCCCCCTCAGTTCTGGAGTTCTTTCCCAGCTCCTGCATTTC
CCCTTCATCCTGTCTTGGCCCCACACATTCGTCAACTCTGTTCCCCCCCCCCCCCCGCCT
GCTTTTGCACTCTAATGGAAATCTTCTTGAACATTCTCTGAGACCATGATACCACCAGAG
TGGGATGCTGTTTGAATCGCCTCCCTTGACAGTTAAGAATTGGAGAGGGGGAAGCCTGGA
CTGAACCAGGGGTTGAATTCGTACTTCATCACAGGTTACATCAGTGAGGGACCAGTTTCT
AGAAGCAGTGTCATTGGAGTTTGGTCGTTTGACTTTAGGCTAAGTGGGGGGTGGCAGAAG
GTCCACGGTCAAGTGAATGTAGACCAAAGAGAAAGAGCAAGAGCATATTCCTAGTAGGCA
GTGGGACCTGGACTGCAAGTGGTCACTGCTCTGGGTGCAGCTGATGAAGGAGCTCTTTCG
CTGGTCCTGAGGCCTCAGACTGATACATCAGGGTACAGCCAGATGATGCTCTGTTATCTC
AGTTTCCAAGTAGTAGCTCCCAGCGGCCCACGTGGGTTACTGTGTGCTAGGAGGTATGCT
GGAGAGTTCCACCCACTTGGATGCCTTCCTCTTGAATCAAGCACCAGTTGGCTTACTCCG
TGGATAAGCTTTTGGCAAGCTGGAAGATATTTTGGTAACCCATACCTTCTCCCAGCTGCC
AAGTTTTAGGAGCCACCTTGGGTGAAGGGTATTAGGGGGTAGGTAAGAATCATGCCACCG
CTGCTGTGAAAGGGCATGTTCTGGGTAGAGTGATACAGTGAACTCTTTGTACGCCAGCCC
CACTGCGACAAGGTAGGTGAATCCGTCATTTGGTTGGTAGCTGGTATAACAGAGGTTCTT
CATCCACCCAGGTAACACTATGTGCCAAATGGTTTTTGTGGTAAACAGATATGAAGGGCC
CTGCCAGATTCTTCTAGAATCAGGCCGTANATTCAGAGTTGCCATACGGCAGATTTAACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATGCAGAAACTTTTCAGTTTTAATTTAATCCCACCAATATTCTTTTAATTAATTCATA
TTCTGCTTAAATAGGCTAGATTTGGCCTGTATCTCAGAATCTTGAGCTTGTTGGGAACTG
GATGAAAGTTTGCCATTCTCTTTGGAAATTGTTTGTTGAGATTGAGATTGCTGACTCGCC
TCTGGGGGATGGTAGGGACGCCCCCTCAGTTCTGGAGTTCTTTCCCAGCTCCTGCATTTC
CCCTTCATCCTGTCTTGGCCCCACACATTCGTCAACTCTGTTCCCCCCCCCCCCCCGCCT
GCTTTTGCACTCTAATGGAAATCTTCTTGAACATTCTCTGAGACCATGATACCACCAGAG
TGGGATGCTGTTTGAATCGCCTCCCTTGACAGTTAAGAATTGGAGAGGGGGAAGCCTGGA
CTGAACCAGGGGTTGAATTCGTACTTCATCACAGGTTACATCAGTGAGGGACCAGTTTCT
AGAAGCAGTGTCATTGGAGTTTGGTCGTTTGACTTTAGGCTAAGTGGGGGGTGGCAGAAG
GTCCACGGTCAAGTGAATGTAGACCAAAGAGAAAGAGCAAGAGCATATTCCTAGTAGGCA
GTGGGACCTGGACTGCAAGTGGTCACTGCTCTGGGTGCAGCTGATGAAGGAGCTCTTTCG
CTGGTCCTGAGGCCTCAGACTGATACATCAGGGTACAGCCAGATGATGCTCTGTTATCTC
AGTTTCCAAGTAGTAGCTCCCAGCGGCCCACGTGGGTTACTGTGTGCTAGGAGGTATGCT
GGAGAGTTCCACCCACTTGGATGCCTTCCTCTTGAATCAAGCACCAGTTGGCTTACTCCG
TGGATAAGCTTTTGGCAAGCTGGAAGATATTTTGGTAACCCATACCTTCTCCCAGCTGCC
AAGTTTTAGGAGCCACCTTGGGTGAAGGGTATTAGGGGGTAGGTAAGAATCATGCCACCG
CTGCTGTGAAAGGGCATGTTCTGGGTAGAGTGATACAGTGAACTCTTTGTACGCCAGCCC
CACTGCGACAAGGTAGGTGAATCCGTCATTTGGTTGGTAGCTGGTATAACAGAGGTTCTT
CATCCACCCAGGTAACACTATGTGCCAAATGGTTTTTGTGGTAAACAGATATGAAGGGCC
CTGCCAGATTCTTCTAGAATCAGGCCGTANATTCAGAGTTGCCATACGGCAGATTTAACG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               791-949, - strand, RNAz p=0.994704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               791-949, - strand, RNAz p=0.994704

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               8-1198, gnl|bosTau2|chr5 (26335962-26337122)
               

               
               8-1198, gnl|Hg17|chr12 (47437410-47435283)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1198, gnl|bosTau2|chr5 (26335962-26337122)
               

               
               8-1198, gnl|Hg17|chr12 (47437410-47435283)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	8-1198, gnl\|bosTau2\|chr5 (26335962-26337122)
	8-1198, gnl\|Hg17\|chr12 (47437410-47435283)