Non-Coding RNA Search

Ss1.1-Tra1-TCH01G050027.5

Sequence:


               
               CCGCCAAGATGGCAGCGCCCATGTTGCGGCGCGTTTCCCGCGGCCGGTGGCTTGGTACCC
CAGGCCAGTCAGGAGTCTTGCCACTAGGGCTCCGTAAGGCCCACTCGGGCGCTCAGGGGT
TGCTGGCGGTGCAGAAGGCTCGGGGTCTATTCAAGGAATTCTTCCCTGAAAGGGGTACAA
AGACAGAGCTCCCAGAGCTCTTCGACCGTGGCTTGGCGGGCAACGTTCCTCAGACCATCT
ATTGCGGTTTCGACCCCACAGCTGACTCGCTTCATGTGGGGCATCTGCTGGCGCTTTTGG
GCCTGTTTCATTTCCAGCGAGCCGGCCACAATGTGATTGCGCTGGTGGGAGGTGCCACGG
CGCGCCTGGGAGACCCCAGCGGCCGCACCAAGGAGCGGGAGGCGCTGGACGCCGAGCGCG
TGCAAAGCAACGCGCTCGCCTTGCGCCAGGGACTACAAGCCCTGGCGGCTAATCACCAGC
AGCTTTTCACTAACGGGCGAAGCTGGGGCAGCTTCACGGTGCTGGATAACTCGGCCTGGT
ACCAGAAGCAGCACCTAGTGGACTTCTTGGCGACCGTGGGCGGCCACTTTCGCATGGGCA
CGCTGCTTAGCCGGCTGAGCGTGCAAAGCCGGCTCAAGAGCCCCGAAGGCATGAGTTTGG
CCGAGTTTTTATACCAGGTGCTCCAAGCCTACGATTTCTACTATCTGTTCCAGCATTATG
GATGCCGGGTCCAGCTGGGTGGAGCTGATCAGCTGGGCAATATCATGTCCGGTTACGAGT
TCATCCACAAGGTGACTGGAGAAGATGTATTTGGCATCTCTGTTCCTCTGATTACAAGTA
CAACTGGAGCAAAACTGGGAAAGTCTGCTGGCAATGCTGTTTGGCTAAACAGAGAGAAGA
CATCTCCGTTTGAATTGTATCAATTTTTTGTCAGGCTGCAAGATAATTTGGTAGAAAGGT
ACCTGAAGCTCTTCACTTTTCTACCCCTTCCAGAGATTGACCACATAATGCAACTGCATG
TCAGAGAGCCAGAAAAGCGGGGTCCCCAGAAACGACTTGCTGCAGAAGTAACAAAGCTTG
TTCATGGACAAGAAGGGCTAGACTCTGCTAAAAGGTGTACACAAGCCCTTTATCATAGCA
GCATAGACGCACTGGAGGTCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCAAGATGGCAGCGCCCATGTTGCGGCGCGTTTCCCGCGGCCGGTGGCTTGGTACCC
CAGGCCAGTCAGGAGTCTTGCCACTAGGGCTCCGTAAGGCCCACTCGGGCGCTCAGGGGT
TGCTGGCGGTGCAGAAGGCTCGGGGTCTATTCAAGGAATTCTTCCCTGAAAGGGGTACAA
AGACAGAGCTCCCAGAGCTCTTCGACCGTGGCTTGGCGGGCAACGTTCCTCAGACCATCT
ATTGCGGTTTCGACCCCACAGCTGACTCGCTTCATGTGGGGCATCTGCTGGCGCTTTTGG
GCCTGTTTCATTTCCAGCGAGCCGGCCACAATGTGATTGCGCTGGTGGGAGGTGCCACGG
CGCGCCTGGGAGACCCCAGCGGCCGCACCAAGGAGCGGGAGGCGCTGGACGCCGAGCGCG
TGCAAAGCAACGCGCTCGCCTTGCGCCAGGGACTACAAGCCCTGGCGGCTAATCACCAGC
AGCTTTTCACTAACGGGCGAAGCTGGGGCAGCTTCACGGTGCTGGATAACTCGGCCTGGT
ACCAGAAGCAGCACCTAGTGGACTTCTTGGCGACCGTGGGCGGCCACTTTCGCATGGGCA
CGCTGCTTAGCCGGCTGAGCGTGCAAAGCCGGCTCAAGAGCCCCGAAGGCATGAGTTTGG
CCGAGTTTTTATACCAGGTGCTCCAAGCCTACGATTTCTACTATCTGTTCCAGCATTATG
GATGCCGGGTCCAGCTGGGTGGAGCTGATCAGCTGGGCAATATCATGTCCGGTTACGAGT
TCATCCACAAGGTGACTGGAGAAGATGTATTTGGCATCTCTGTTCCTCTGATTACAAGTA
CAACTGGAGCAAAACTGGGAAAGTCTGCTGGCAATGCTGTTTGGCTAAACAGAGAGAAGA
CATCTCCGTTTGAATTGTATCAATTTTTTGTCAGGCTGCAAGATAATTTGGTAGAAAGGT
ACCTGAAGCTCTTCACTTTTCTACCCCTTCCAGAGATTGACCACATAATGCAACTGCATG
TCAGAGAGCCAGAAAAGCGGGGTCCCCAGAAACGACTTGCTGCAGAAGTAACAAAGCTTG
TTCATGGACAAGAAGGGCTAGACTCTGCTAAAAGGTGTACACAAGCCCTTTATCATAGCA
GCATAGACGCACTGGAGGTCATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15990482|gb|AAH15625.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15990482|gb|AAH15625.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               363-522, + strand, RNAz p=0.999528

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               363-522, + strand, RNAz p=0.999528

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-589, gnl|bosTau2|chr11 (16227812-16227253)
               

               
               4-589, gnl|Hg17|chr12 (32800080-32799498)
               

               
               4-589, gnl|Mm7|chr16 (15846337-15846903)
               


               
               682-1164, gnl|bosTau2|chr11 (16226367-16225886)
               

               
               682-1164, gnl|Hg17|chr12 (32799387-32794259)
               

               
               682-1164, gnl|Mm7|chr16 (15847006-15850616)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-589, gnl|bosTau2|chr11 (16227812-16227253)
               

               
               4-589, gnl|Hg17|chr12 (32800080-32799498)
               

               
               4-589, gnl|Mm7|chr16 (15846337-15846903)
               


               
               682-1164, gnl|bosTau2|chr11 (16226367-16225886)
               

               
               682-1164, gnl|Hg17|chr12 (32799387-32794259)
               

               
               682-1164, gnl|Mm7|chr16 (15847006-15850616)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               kid (0.129735)

	4-589, gnl\|bosTau2\|chr11 (16227812-16227253)
	4-589, gnl\|Hg17\|chr12 (32800080-32799498)
	4-589, gnl\|Mm7\|chr16 (15846337-15846903)

	682-1164, gnl\|bosTau2\|chr11 (16226367-16225886)
	682-1164, gnl\|Hg17\|chr12 (32799387-32794259)
	682-1164, gnl\|Mm7\|chr16 (15847006-15850616)