Ss1.1-Tra1-TCH01G050030.5
|
CCCTTCAGCTGGGTCATGAGAGGGGCGTCCCTGAGGGTTTGGGCCTTCAGTAGAGACACC
TGATCCACAGAGGACTGGGCACGATGTCTGGGATATATCCACCTGCTGCTTCAGTGTCTG
TCGGGCCGGGGAATGGCACATACGGCGTCCTTTATGAATGCTGAAGCTCCCCAAACCCAG
CCTCGATGTGAAGACAGGCCCTAACAGGAGAGGGGCCAGCAGAGGTGCGGGAGGGGCGTG
AAAGCGAGCAAGAATGTCCAGAAGGCCCCCTGGCCTGAGGTCGCTCTCAGGGTCCGACCA
TTTCGCAAGGCTGCCCTGGCCGTCCCCACCTTCCCAGCCCATCCCAGGACTGGGGGCAGT
CCTCCTCCCCTCCCGCCCCGCCTGCCCTCCCGCTGGCTCACCCATCAGCGTCATCATCGA
TCTTGCCCTTGATCTTCAGGGTTTTCCCCACCTTCATGTCCATGTTCATAATCTCAACTT
TCCCCTGTGCCAACAGAGAAACATCCGGCAAAAATCACATCCCATACAAATCGGTCACAC
ATGTGCCCAGTGCGCTGCTGCTAGTGAAGCCCACTCACCAGCATCACCCCGTCCCCACCC
GGCCACAGGCCTCACCCTCCCTCTGCCCTCATGAGGGCACTGAGCTGGGCAGGGAAAGAG
CCCAGAGCCCCCTCTTGCCCATATGCCTTCGCTCTCATCCACCCCAGACTGACTAGAACA
GCTGGATCTAGACATTCCAGCTGAGGAACCTCAGTCTGCCCATCTATGAAATGGGTAGAG
TGATTGCTGACCTCGCTGTTCACAAATGTGTTCATGTGATGAGGCACGCTGTCCACAGCA
GGATCCCCCAAACAAGGGTGTGCCTAGTTCTTGCACAAACAGAAGCGCACCAGGCACAGA
AAATGACTGTAGCTCAGGCAGGTCCTGGCCCATCCCAAACCGAGCATCCATAAAACTCCA
TGAGTTACATGTCTGAACATGTCTATCAAAGTCCCTCTAGGAGTTCCC------------
------------------------------------------------------------
------------------------------------------------AAAAAAAAAAGT
CCCTCTCCTAACCTCATTTTCCACATCTATAAAATGGGCTAATTTGATTTATTTCAAGTG
CCCACTAATGCTGTTGGGTGTCCTGAGGTTAACAGTACCCACTTTGGGCTGGTTGGGAGG
ACGAGCGCGCCCCTGAATAAGGCTTGGCACAGACTGAAAGGAAATCGAGGCGCTGTCGTC
ATTATGCTGACT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCCTTCAGCTGGGTCATGAGAGGGGCGTCCCTGAGGGTTTGGGCCTTCAGTAGAGACACC
TGATCCACAGAGGACTGGGCACGATGTCTGGGATATATCCACCTGCTGCTTCAGTGTCTG
TCGGGCCGGGGAATGGCACATACGGCGTCCTTTATGAATGCTGAAGCTCCCCAAACCCAG
CCTCGATGTGAAGACAGGCCCTAACAGGAGAGGGGCCAGCAGAGGTGCGGGAGGGGCGTG
AAAGCGAGCAAGAATGTCCAGAAGGCCCCCTGGCCTGAGGTCGCTCTCAGGGTCCGACCA
TTTCGCAAGGCTGCCCTGGCCGTCCCCACCTTCCCAGCCCATCCCAGGACTGGGGGCAGT
CCTCCTCCCCTCCCGCCCCGCCTGCCCTCCCGCTGGCTCACCCATCAGCGTCATCATCGA
TCTTGCCCTTGATCTTCAGGGTTTTCCCCACCTTCATGTCCATGTTCATAATCTCAACTT
TCCCCTGTGCCAACAGAGAAACATCCGGCAAAAATCACATCCCATACAAATCGGTCACAC
ATGTGCCCAGTGCGCTGCTGCTAGTGAAGCCCACTCACCAGCATCACCCCGTCCCCACCC
GGCCACAGGCCTCACCCTCCCTCTGCCCTCATGAGGGCACTGAGCTGGGCAGGGAAAGAG
CCCAGAGCCCCCTCTTGCCCATATGCCTTCGCTCTCATCCACCCCAGACTGACTAGAACA
GCTGGATCTAGACATTCCAGCTGAGGAACCTCAGTCTGCCCATCTATGAAATGGGTAGAG
TGATTGCTGACCTCGCTGTTCACAAATGTGTTCATGTGATGAGGCACGCTGTCCACAGCA
GGATCCCCCAAACAAGGGTGTGCCTAGTTCTTGCACAAACAGAAGCGCACCAGGCACAGA
AAATGACTGTAGCTCAGGCAGGTCCTGGCCCATCCCAAACCGAGCATCCATAAAACTCCA
TGAGTTACATGTCTGAACATGTCTATCAAAGTCCCTCTAGGAGTTCCC------------
------------------------------------------------------------
------------------------------------------------AAAAAAAAAAGT
CCCTCTCCTAACCTCATTTTCCACATCTATAAAATGGGCTAATTTGATTTATTTCAAGTG
CCCACTAATGCTGTTGGGTGTCCTGAGGTTAACAGTACCCACTTTGGGCTGGTTGGGAGG
ACGAGCGCGCCCCTGAATAAGGCTTGGCACAGACTGAAAGGAAATCGAGGCGCTGTCGTC
ATTATGCTGACT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
2-524, gnl|bosTau2|chr5 (67388266-67387757) |
|
2-524, gnl|canFam2|chr10 (30086867-30086506) |
|
2-524, gnl|dasNov1|scaffold_3648 (4812-5135) |
|
2-524, gnl|echTel1|scaffold_277691 (11212-11483) |
|
2-524, gnl|hg17|chr22 (36291972-36292316) |
|
2-524, gnl|Hg17|chr22 (36292005-36292490) |
|
2-524, gnl|loxAfr1|scaffold_32602 (9975-9630) |
|
2-524, gnl|mm7|chr15 (78934953-78935191) |
|
2-524, gnl|oryCun1|scaffold_142202 (2904-3055) |
|
2-524, gnl|panTro1|chr23 (36468919-36469263) |
|
2-524, gnl|rheMac2|chr10 (81482987-81483340) |
|
2-524, gnl|rn3|chr7 (116846756-116847008) |
| |
|
655-911, gnl|bosTau2|chr5 (67387632-67387364) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-524, gnl|bosTau2|chr5 (67388266-67387757) |
|
2-524, gnl|canFam2|chr10 (30086867-30086506) |
|
2-524, gnl|dasNov1|scaffold_3648 (4812-5135) |
|
2-524, gnl|echTel1|scaffold_277691 (11212-11483) |
|
2-524, gnl|hg17|chr22 (36291972-36292316) |
|
2-524, gnl|Hg17|chr22 (36292005-36292490) |
|
2-524, gnl|loxAfr1|scaffold_32602 (9975-9630) |
|
2-524, gnl|mm7|chr15 (78934953-78935191) |
|
2-524, gnl|oryCun1|scaffold_142202 (2904-3055) |
|
2-524, gnl|panTro1|chr23 (36468919-36469263) |
|
2-524, gnl|rheMac2|chr10 (81482987-81483340) |
|
2-524, gnl|rn3|chr7 (116846756-116847008) |
| |
|
655-911, gnl|bosTau2|chr5 (67387632-67387364) |
|
ese (0.126502) |
|
jej (0.0989218) |
|
ese (0.126502) |
|
jej (0.0989218) |
